Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_19790 and sctT are separated by 1 nucleotides sctT and sctT are separated by 78 nucleotides sctT and flhB are separated by 8 nucleotides flhB and csgD are separated by 356 nucleotides
OKFHMN_19790: OKFHMN_19790 - EscS/YscS/HrcS family type III secretion system export apparatus protein, at 3,851,397 to 3,851,657
_19790
OKFHMN_19795: sctT - type III secretion system export apparatus subunit SctT, at 3,851,659 to 3,852,111
sctT
OKFHMN_19800: sctT - type III secretion system export apparatus subunit SctT, at 3,852,190 to 3,852,426
sctT
OKFHMN_19805: flhB - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 3,852,435 to 3,853,556
flhB
OKFHMN_19810: csgD - LuxR family transcriptional regulator, at 3,853,913 to 3,854,413
csgD
Position (kb) 3852
3853
3854 Strain fitness (log2 ratio) -1
0
1 at 3851.672 kb on + strand at 3851.801 kb on + strand, within sctT at 3851.919 kb on - strand, within sctT at 3852.271 kb on + strand, within sctT at 3852.410 kb on + strand at 3853.294 kb on + strand, within flhB at 3853.875 kb on + strand at 3854.111 kb on + strand, within csgD at 3854.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 3,851,672 + -0.7 3,851,801 + sctT OKFHMN_19795 0.31 +0.2 3,851,919 - sctT OKFHMN_19795 0.57 +0.9 3,852,271 + sctT OKFHMN_19800 0.34 +1.4 3,852,410 + +0.2 3,853,294 + flhB OKFHMN_19805 0.77 -0.1 3,853,875 + +0.3 3,854,111 + csgD OKFHMN_19810 0.40 -0.2 3,854,452 + -0.1
Or see this region's nucleotide sequence