Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsK and rpsD are separated by 33 nucleotides rpsD and rpoA are separated by 25 nucleotides rpoA and OKFHMN_17490 are separated by 40 nucleotides OKFHMN_17490 and yhdN are separated by 106 nucleotides yhdN and zntR are separated by 10 nucleotides
OKFHMN_17475: rpsK - 30S ribosomal protein S11, at 3,397,971 to 3,398,360
rpsK
OKFHMN_17480: rpsD - 30S ribosomal protein S4, at 3,398,394 to 3,399,014
rpsD
OKFHMN_17485: rpoA - DNA-directed RNA polymerase subunit alpha, at 3,399,040 to 3,400,029
rpoA
OKFHMN_17490: OKFHMN_17490 - 50S ribosomal protein L17, at 3,400,070 to 3,400,453
_17490
OKFHMN_17495: yhdN - Uncharacterized protein YhdN, at 3,400,560 to 3,400,928
yhdN
OKFHMN_17500: zntR - Zn(2+)-responsive transcriptional regulator, at 3,400,939 to 3,401,364
zntR
Position (kb)
3399
3400
3401 Strain fitness (log2 ratio)
-1
0
1 at 3400.515 kb on + strand at 3400.515 kb on + strand at 3400.515 kb on + strand at 3400.516 kb on - strand at 3400.555 kb on + strand at 3400.555 kb on + strand at 3400.556 kb on - strand at 3400.556 kb on - strand at 3400.567 kb on + strand at 3400.567 kb on + strand at 3400.592 kb on + strand at 3400.595 kb on - strand at 3400.926 kb on + strand at 3400.926 kb on + strand at 3400.934 kb on + strand at 3400.934 kb on + strand at 3400.935 kb on - strand at 3400.935 kb on - strand at 3400.938 kb on + strand at 3400.938 kb on + strand at 3400.938 kb on + strand at 3400.938 kb on + strand at 3400.938 kb on + strand at 3400.939 kb on - strand at 3400.939 kb on - strand at 3400.939 kb on - strand at 3400.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 3,400,515 + -0.4 3,400,515 + +1.1 3,400,515 + -0.9 3,400,516 - -0.7 3,400,555 + +0.3 3,400,555 + -0.1 3,400,556 - +0.5 3,400,556 - -0.6 3,400,567 + +0.3 3,400,567 + -0.2 3,400,592 + +0.2 3,400,595 - +0.5 3,400,926 + +0.2 3,400,926 + -0.5 3,400,934 + +0.5 3,400,934 + +0.3 3,400,935 - +0.4 3,400,935 - +0.7 3,400,938 + -0.6 3,400,938 + +0.2 3,400,938 + -0.7 3,400,938 + -0.8 3,400,938 + +0.4 3,400,939 - -0.9 3,400,939 - +1.1 3,400,939 - -0.3 3,400,942 + -0.1
Or see this region's nucleotide sequence