Strain Fitness in Escherichia coli ECRC100 around OKFHMN_16340

Experiment: JK42

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK42
3,179,749	-	chuY	OKFHMN_16330	0.31	-0.4
3,179,843	+	chuY	OKFHMN_16330	0.46	-0.2
3,179,930	-	chuY	OKFHMN_16330	0.60	-0.3
3,179,960	+	chuY	OKFHMN_16330	0.65	+0.2
3,179,960	+	chuY	OKFHMN_16330	0.65	-0.0
3,179,961	-	chuY	OKFHMN_16330	0.65	-1.5
3,179,961	-	chuY	OKFHMN_16330	0.65	+0.4
3,180,000	+	chuY	OKFHMN_16330	0.72	-1.6
3,180,335	-	chuX	OKFHMN_16335	0.32	+0.6
3,180,345	-	chuX	OKFHMN_16335	0.34	+0.0
3,180,352	+	chuX	OKFHMN_16335	0.36	-0.5
3,180,352	+	chuX	OKFHMN_16335	0.36	-0.2
3,180,353	-	chuX	OKFHMN_16335	0.36	+0.5
3,180,376	+	chuX	OKFHMN_16335	0.40	-0.1
3,180,405	-	chuX	OKFHMN_16335	0.46	-0.7
3,180,465	-	chuX	OKFHMN_16335	0.58	-0.4
3,180,475	+	chuX	OKFHMN_16335	0.60	+0.9
3,180,475	+	chuX	OKFHMN_16335	0.60	+0.4
3,180,476	-	chuX	OKFHMN_16335	0.61	+0.1
3,180,476	-	chuX	OKFHMN_16335	0.61	+1.7
3,180,476	-	chuX	OKFHMN_16335	0.61	-0.9
3,180,479	+	chuX	OKFHMN_16335	0.61	+0.5
3,180,479	+	chuX	OKFHMN_16335	0.61	-0.4
3,180,479	+	chuX	OKFHMN_16335	0.61	-0.2
3,180,480	-	chuX	OKFHMN_16335	0.61	+0.4
3,180,480	-	chuX	OKFHMN_16335	0.61	-0.4
3,180,480	-	chuX	OKFHMN_16335	0.61	-0.7
3,180,482	+	chuX	OKFHMN_16335	0.62	+0.1
3,180,483	-	chuX	OKFHMN_16335	0.62	+0.1
3,180,483	-	chuX	OKFHMN_16335	0.62	-0.2
3,180,483	-	chuX	OKFHMN_16335	0.62	-0.6
3,180,549	-	chuX	OKFHMN_16335	0.75	-0.1
3,180,554	-	chuX	OKFHMN_16335	0.76	+0.1
3,180,575	+	chuX	OKFHMN_16335	0.81	+0.9
3,180,576	-	chuX	OKFHMN_16335	0.81	-0.1
3,180,597	+	chuX	OKFHMN_16335	0.85	+1.2
3,180,597	+	chuX	OKFHMN_16335	0.85	+0.4
3,180,597	+	chuX	OKFHMN_16335	0.85	+1.4
3,180,598	-	chuX	OKFHMN_16335	0.85	+1.0
3,180,598	-	chuX	OKFHMN_16335	0.85	-0.1
3,180,598	-	chuX	OKFHMN_16335	0.85	-1.2
3,180,715	+				+1.1
3,180,715	+				-0.2
3,180,729	-				-0.3
3,180,737	-				-0.5
3,180,752	-				+0.5
3,180,813	-				-0.6
3,180,917	-	chuW	OKFHMN_16340	0.17	-0.1
3,181,030	-	chuW	OKFHMN_16340	0.26	+1.7
3,181,100	-	chuW	OKFHMN_16340	0.31	+0.1
3,181,102	-	chuW	OKFHMN_16340	0.31	+0.2
3,181,141	+	chuW	OKFHMN_16340	0.34	+0.2
3,181,142	-	chuW	OKFHMN_16340	0.34	-2.1
3,181,221	-	chuW	OKFHMN_16340	0.40	-1.9
3,181,226	-	chuW	OKFHMN_16340	0.41	-0.2
3,181,226	-	chuW	OKFHMN_16340	0.41	-0.2
3,181,262	-	chuW	OKFHMN_16340	0.43	+0.1
3,181,284	+	chuW	OKFHMN_16340	0.45	+0.0
3,181,573	+	chuW	OKFHMN_16340	0.67	-0.3
3,181,613	+	chuW	OKFHMN_16340	0.70	-2.1
3,181,613	+	chuW	OKFHMN_16340	0.70	+0.6
3,181,709	+	chuW	OKFHMN_16340	0.77	-2.3
3,181,730	+	chuW	OKFHMN_16340	0.78	+0.4
3,181,730	+	chuW	OKFHMN_16340	0.78	-2.0
3,181,755	+	chuW	OKFHMN_16340	0.80	-0.3
3,181,778	-	chuW	OKFHMN_16340	0.82	+1.1
3,182,009	-				-0.1
3,182,064	+				-0.1
3,182,065	-				-0.3
3,182,087	+				-0.1
3,182,130	-				+1.7
3,182,163	-	chuT	OKFHMN_16345	0.13	-0.6
3,182,174	+	chuT	OKFHMN_16345	0.15	-0.1
3,182,232	+	chuT	OKFHMN_16345	0.21	-2.7
3,182,424	+	chuT	OKFHMN_16345	0.42	-0.1
3,182,425	-	chuT	OKFHMN_16345	0.42	-0.2
3,182,515	+	chuT	OKFHMN_16345	0.52	+0.6
3,182,516	-	chuT	OKFHMN_16345	0.52	+1.7
3,182,577	+	chuT	OKFHMN_16345	0.59	-0.5
3,182,577	+	chuT	OKFHMN_16345	0.59	+0.4
3,182,618	+	chuT	OKFHMN_16345	0.63	+0.7
3,182,622	+	chuT	OKFHMN_16345	0.64	+0.0
3,182,622	+	chuT	OKFHMN_16345	0.64	-0.4
3,182,623	-	chuT	OKFHMN_16345	0.64	+0.2
3,182,623	-	chuT	OKFHMN_16345	0.64	-1.5
3,182,623	-	chuT	OKFHMN_16345	0.64	-0.1
3,182,682	-	chuT	OKFHMN_16345	0.70	+0.7
3,182,766	+	chuT	OKFHMN_16345	0.79	-0.1
3,182,798	+	chuT	OKFHMN_16345	0.83	-0.3
3,182,831	+	chuT	OKFHMN_16345	0.86	+0.6
3,182,903	+				-0.0
3,182,907	+				-0.9
3,182,908	-				-0.1
3,182,954	+				-0.0
3,183,007	+				+0.1
3,183,007	+				+0.5
3,183,010	-				+0.3
3,183,016	+				-0.0
3,183,017	-				+0.4