Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15470

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnpB and tnpB overlap by 4 nucleotidestnpB and OKFHMN_15470 are separated by 572 nucleotidesOKFHMN_15470 and OKFHMN_15475 are separated by 60 nucleotidesOKFHMN_15475 and OKFHMN_15480 are separated by 293 nucleotides OKFHMN_15460: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 2,988,275 to 2,988,622 tnpB OKFHMN_15465: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 2,988,619 to 2,988,999 tnpB OKFHMN_15470: OKFHMN_15470 - Putative restriction methylase, at 2,989,572 to 2,989,715 _15470 OKFHMN_15475: OKFHMN_15475 - Aec79, at 2,989,776 to 2,990,117 _15475 OKFHMN_15480: OKFHMN_15480 - DUF5983 domain-containing protein, at 2,990,411 to 2,990,902 _15480 Position (kb) 2989 2990Strain fitness (log2 ratio) -1 0 1 2 3at 2989.083 kb on + strandat 2989.083 kb on + strandat 2989.213 kb on + strandat 2989.214 kb on - strandat 2989.217 kb on - strandat 2989.233 kb on + strandat 2989.234 kb on - strandat 2989.234 kb on - strandat 2989.276 kb on + strandat 2989.308 kb on - strandat 2989.308 kb on - strandat 2989.308 kb on - strandat 2989.308 kb on - strandat 2989.308 kb on - strandat 2989.321 kb on - strandat 2989.323 kb on + strandat 2989.324 kb on - strandat 2989.383 kb on - strandat 2989.388 kb on - strandat 2989.391 kb on + strandat 2989.392 kb on - strandat 2989.404 kb on - strandat 2989.429 kb on + strandat 2989.446 kb on + strandat 2989.455 kb on + strandat 2989.455 kb on + strandat 2989.456 kb on - strandat 2989.546 kb on - strandat 2989.629 kb on - strand, within OKFHMN_15470at 2989.719 kb on - strandat 2989.772 kb on + strandat 2989.772 kb on + strandat 2989.773 kb on - strandat 2989.773 kb on - strandat 2989.773 kb on - strandat 2989.773 kb on - strandat 2990.103 kb on + strandat 2990.104 kb on - strandat 2990.187 kb on + strandat 2990.187 kb on + strandat 2990.187 kb on + strandat 2990.188 kb on - strandat 2990.298 kb on - strandat 2990.408 kb on + strandat 2990.408 kb on + strandat 2990.408 kb on + strandat 2990.408 kb on + strandat 2990.408 kb on + strandat 2990.408 kb on + strandat 2990.409 kb on - strandat 2990.409 kb on - strandat 2990.409 kb on - strandat 2990.409 kb on - strandat 2990.412 kb on + strandat 2990.420 kb on - strandat 2990.677 kb on + strand, within OKFHMN_15480at 2990.696 kb on + strand, within OKFHMN_15480

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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2,989,083 + +0.1
2,989,083 + +0.6
2,989,213 + +3.6
2,989,214 - -0.3
2,989,217 - +0.6
2,989,233 + -0.1
2,989,234 - +0.2
2,989,234 - -0.9
2,989,276 + +0.1
2,989,308 - -0.2
2,989,308 - +0.1
2,989,308 - +0.2
2,989,308 - -0.6
2,989,308 - +0.6
2,989,321 - -1.0
2,989,323 + +0.3
2,989,324 - -0.3
2,989,383 - +0.2
2,989,388 - +0.1
2,989,391 + -1.4
2,989,392 - -0.2
2,989,404 - +0.2
2,989,429 + -0.4
2,989,446 + +1.2
2,989,455 + -0.2
2,989,455 + -0.3
2,989,456 - +0.9
2,989,546 - +1.0
2,989,629 - OKFHMN_15470 0.40 -1.7
2,989,719 - +2.4
2,989,772 + +1.3
2,989,772 + +0.9
2,989,773 - -0.1
2,989,773 - -0.4
2,989,773 - -0.1
2,989,773 - -1.5
2,990,103 + +0.2
2,990,104 - -0.2
2,990,187 + -0.7
2,990,187 + +0.6
2,990,187 + +0.3
2,990,188 - -0.4
2,990,298 - -0.6
2,990,408 + -0.4
2,990,408 + +0.2
2,990,408 + -0.1
2,990,408 + +0.1
2,990,408 + +0.3
2,990,408 + +0.1
2,990,409 - -0.6
2,990,409 - -0.1
2,990,409 - +0.7
2,990,409 - +0.4
2,990,412 + -0.2
2,990,420 - +0.4
2,990,677 + OKFHMN_15480 0.54 +0.0
2,990,696 + OKFHMN_15480 0.58 -1.3

Or see this region's nucleotide sequence