Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13525

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt16S_rrna and murI are separated by 376 nucleotidesmurI and btuB overlap by 56 nucleotides OKFHMN_13520: 16S_rrna - 16S ribosomal RNA, at 2,597,574 to 2,599,115 _rrna OKFHMN_13525: murI - glutamate racemase, at 2,599,492 to 2,600,349 murI OKFHMN_13530: btuB - TonB-dependent vitamin B12 receptor BtuB, at 2,600,294 to 2,602,138 btuB Position (kb) 2599 2600 2601Strain fitness (log2 ratio) -3 -2 -1 0 1at 2600.385 kb on - strandat 2600.462 kb on - strandat 2600.478 kb on + strandat 2600.479 kb on - strand, within btuBat 2600.488 kb on - strand, within btuBat 2600.499 kb on + strand, within btuBat 2600.500 kb on - strand, within btuBat 2600.510 kb on + strand, within btuBat 2600.514 kb on + strand, within btuBat 2600.514 kb on + strand, within btuBat 2600.515 kb on - strand, within btuBat 2600.515 kb on - strand, within btuBat 2600.515 kb on - strand, within btuBat 2600.520 kb on + strand, within btuBat 2600.520 kb on + strand, within btuBat 2600.521 kb on - strand, within btuBat 2600.521 kb on - strand, within btuBat 2600.521 kb on - strand, within btuBat 2600.521 kb on - strand, within btuBat 2600.521 kb on - strand, within btuBat 2600.524 kb on + strand, within btuBat 2600.524 kb on + strand, within btuBat 2600.524 kb on + strand, within btuBat 2600.524 kb on + strand, within btuBat 2600.524 kb on + strand, within btuBat 2600.525 kb on - strand, within btuBat 2600.525 kb on - strand, within btuBat 2600.525 kb on - strand, within btuBat 2600.525 kb on - strand, within btuBat 2600.545 kb on - strand, within btuBat 2600.566 kb on - strand, within btuBat 2600.592 kb on - strand, within btuBat 2600.632 kb on - strand, within btuBat 2600.637 kb on + strand, within btuBat 2600.638 kb on - strand, within btuBat 2600.638 kb on - strand, within btuBat 2600.638 kb on - strand, within btuBat 2600.638 kb on - strand, within btuBat 2600.638 kb on - strand, within btuBat 2600.647 kb on + strand, within btuBat 2600.648 kb on - strand, within btuBat 2600.696 kb on - strand, within btuBat 2600.718 kb on + strand, within btuBat 2600.719 kb on - strand, within btuBat 2600.719 kb on - strand, within btuBat 2600.767 kb on + strand, within btuBat 2600.783 kb on - strand, within btuBat 2600.783 kb on - strand, within btuBat 2600.874 kb on + strand, within btuBat 2600.899 kb on + strand, within btuBat 2600.899 kb on + strand, within btuBat 2600.899 kb on + strand, within btuBat 2600.900 kb on - strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.902 kb on - strand, within btuBat 2600.902 kb on - strand, within btuBat 2600.902 kb on - strand, within btuBat 2601.026 kb on - strand, within btuBat 2601.026 kb on - strand, within btuBat 2601.058 kb on - strand, within btuBat 2601.067 kb on + strand, within btuBat 2601.070 kb on + strand, within btuBat 2601.071 kb on - strand, within btuBat 2601.081 kb on + strand, within btuBat 2601.082 kb on - strand, within btuBat 2601.082 kb on - strand, within btuBat 2601.083 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.097 kb on - strand, within btuBat 2601.097 kb on - strand, within btuBat 2601.097 kb on - strand, within btuBat 2601.152 kb on - strand, within btuBat 2601.152 kb on - strand, within btuBat 2601.192 kb on + strand, within btuBat 2601.192 kb on + strand, within btuBat 2601.193 kb on - strand, within btuBat 2601.193 kb on - strand, within btuBat 2601.193 kb on - strand, within btuBat 2601.229 kb on - strand, within btuBat 2601.249 kb on + strand, within btuBat 2601.250 kb on - strand, within btuBat 2601.250 kb on - strand, within btuBat 2601.256 kb on - strand, within btuBat 2601.256 kb on - strand, within btuBat 2601.266 kb on - strand, within btuBat 2601.271 kb on + strand, within btuBat 2601.271 kb on + strand, within btuBat 2601.272 kb on - strand, within btuBat 2601.273 kb on + strand, within btuBat 2601.273 kb on + strand, within btuBat 2601.273 kb on + strand, within btuBat 2601.310 kb on + strand, within btuBat 2601.310 kb on + strand, within btuBat 2601.312 kb on + strand, within btuBat 2601.340 kb on + strand, within btuB

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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2,600,385 - -0.1
2,600,462 - -1.7
2,600,478 + -0.6
2,600,479 - btuB OKFHMN_13530 0.10 -0.9
2,600,488 - btuB OKFHMN_13530 0.11 -2.9
2,600,499 + btuB OKFHMN_13530 0.11 -1.9
2,600,500 - btuB OKFHMN_13530 0.11 +0.6
2,600,510 + btuB OKFHMN_13530 0.12 -0.5
2,600,514 + btuB OKFHMN_13530 0.12 -0.5
2,600,514 + btuB OKFHMN_13530 0.12 -1.3
2,600,515 - btuB OKFHMN_13530 0.12 -1.0
2,600,515 - btuB OKFHMN_13530 0.12 +1.1
2,600,515 - btuB OKFHMN_13530 0.12 +0.9
2,600,520 + btuB OKFHMN_13530 0.12 -1.3
2,600,520 + btuB OKFHMN_13530 0.12 -1.2
2,600,521 - btuB OKFHMN_13530 0.12 -1.1
2,600,521 - btuB OKFHMN_13530 0.12 -0.4
2,600,521 - btuB OKFHMN_13530 0.12 -1.0
2,600,521 - btuB OKFHMN_13530 0.12 -0.9
2,600,521 - btuB OKFHMN_13530 0.12 -0.3
2,600,524 + btuB OKFHMN_13530 0.12 +0.4
2,600,524 + btuB OKFHMN_13530 0.12 -1.1
2,600,524 + btuB OKFHMN_13530 0.12 -0.1
2,600,524 + btuB OKFHMN_13530 0.12 -1.9
2,600,524 + btuB OKFHMN_13530 0.12 -1.5
2,600,525 - btuB OKFHMN_13530 0.13 -0.9
2,600,525 - btuB OKFHMN_13530 0.13 -1.9
2,600,525 - btuB OKFHMN_13530 0.13 +0.1
2,600,525 - btuB OKFHMN_13530 0.13 -0.5
2,600,545 - btuB OKFHMN_13530 0.14 -1.4
2,600,566 - btuB OKFHMN_13530 0.15 -1.1
2,600,592 - btuB OKFHMN_13530 0.16 -1.5
2,600,632 - btuB OKFHMN_13530 0.18 -0.9
2,600,637 + btuB OKFHMN_13530 0.19 +0.1
2,600,638 - btuB OKFHMN_13530 0.19 -1.9
2,600,638 - btuB OKFHMN_13530 0.19 +1.6
2,600,638 - btuB OKFHMN_13530 0.19 -0.1
2,600,638 - btuB OKFHMN_13530 0.19 -0.9
2,600,638 - btuB OKFHMN_13530 0.19 -0.8
2,600,647 + btuB OKFHMN_13530 0.19 -0.1
2,600,648 - btuB OKFHMN_13530 0.19 -0.8
2,600,696 - btuB OKFHMN_13530 0.22 -2.0
2,600,718 + btuB OKFHMN_13530 0.23 -0.5
2,600,719 - btuB OKFHMN_13530 0.23 -1.5
2,600,719 - btuB OKFHMN_13530 0.23 -0.9
2,600,767 + btuB OKFHMN_13530 0.26 -1.2
2,600,783 - btuB OKFHMN_13530 0.27 -0.4
2,600,783 - btuB OKFHMN_13530 0.27 -0.4
2,600,874 + btuB OKFHMN_13530 0.31 -1.5
2,600,899 + btuB OKFHMN_13530 0.33 -0.7
2,600,899 + btuB OKFHMN_13530 0.33 +0.2
2,600,899 + btuB OKFHMN_13530 0.33 -2.9
2,600,900 - btuB OKFHMN_13530 0.33 -0.3
2,600,901 + btuB OKFHMN_13530 0.33 -1.4
2,600,901 + btuB OKFHMN_13530 0.33 -0.7
2,600,901 + btuB OKFHMN_13530 0.33 -0.5
2,600,901 + btuB OKFHMN_13530 0.33 -0.4
2,600,901 + btuB OKFHMN_13530 0.33 -0.6
2,600,901 + btuB OKFHMN_13530 0.33 -0.6
2,600,901 + btuB OKFHMN_13530 0.33 -0.8
2,600,902 - btuB OKFHMN_13530 0.33 -0.7
2,600,902 - btuB OKFHMN_13530 0.33 -1.2
2,600,902 - btuB OKFHMN_13530 0.33 -0.9
2,601,026 - btuB OKFHMN_13530 0.40 -0.4
2,601,026 - btuB OKFHMN_13530 0.40 -1.6
2,601,058 - btuB OKFHMN_13530 0.41 -0.4
2,601,067 + btuB OKFHMN_13530 0.42 -0.8
2,601,070 + btuB OKFHMN_13530 0.42 -0.5
2,601,071 - btuB OKFHMN_13530 0.42 +0.1
2,601,081 + btuB OKFHMN_13530 0.43 -0.9
2,601,082 - btuB OKFHMN_13530 0.43 -1.2
2,601,082 - btuB OKFHMN_13530 0.43 -0.7
2,601,083 + btuB OKFHMN_13530 0.43 +1.6
2,601,096 + btuB OKFHMN_13530 0.43 -1.2
2,601,096 + btuB OKFHMN_13530 0.43 -1.2
2,601,096 + btuB OKFHMN_13530 0.43 -0.7
2,601,096 + btuB OKFHMN_13530 0.43 -0.1
2,601,096 + btuB OKFHMN_13530 0.43 -0.8
2,601,096 + btuB OKFHMN_13530 0.43 -1.1
2,601,096 + btuB OKFHMN_13530 0.43 -0.7
2,601,097 - btuB OKFHMN_13530 0.44 +0.7
2,601,097 - btuB OKFHMN_13530 0.44 -1.0
2,601,097 - btuB OKFHMN_13530 0.44 -0.7
2,601,152 - btuB OKFHMN_13530 0.47 -1.0
2,601,152 - btuB OKFHMN_13530 0.47 -1.1
2,601,192 + btuB OKFHMN_13530 0.49 +0.2
2,601,192 + btuB OKFHMN_13530 0.49 -0.2
2,601,193 - btuB OKFHMN_13530 0.49 +0.9
2,601,193 - btuB OKFHMN_13530 0.49 +0.6
2,601,193 - btuB OKFHMN_13530 0.49 -0.8
2,601,229 - btuB OKFHMN_13530 0.51 +0.3
2,601,249 + btuB OKFHMN_13530 0.52 -1.1
2,601,250 - btuB OKFHMN_13530 0.52 -1.3
2,601,250 - btuB OKFHMN_13530 0.52 -0.3
2,601,256 - btuB OKFHMN_13530 0.52 -0.1
2,601,256 - btuB OKFHMN_13530 0.52 +0.3
2,601,266 - btuB OKFHMN_13530 0.53 -0.7
2,601,271 + btuB OKFHMN_13530 0.53 -1.5
2,601,271 + btuB OKFHMN_13530 0.53 +0.6
2,601,272 - btuB OKFHMN_13530 0.53 -0.5
2,601,273 + btuB OKFHMN_13530 0.53 -1.0
2,601,273 + btuB OKFHMN_13530 0.53 -1.2
2,601,273 + btuB OKFHMN_13530 0.53 -1.1
2,601,310 + btuB OKFHMN_13530 0.55 -0.2
2,601,310 + btuB OKFHMN_13530 0.55 +0.3
2,601,312 + btuB OKFHMN_13530 0.55 -0.8
2,601,340 + btuB OKFHMN_13530 0.57 -0.2

Or see this region's nucleotide sequence