Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10000

Experiment: JK42

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK42
1,868,136	+	yafD	OKFHMN_09995	0.24	+1.1
1,868,137	-	yafD	OKFHMN_09995	0.24	-0.1
1,868,184	-	yafD	OKFHMN_09995	0.30	+0.1
1,868,208	+	yafD	OKFHMN_09995	0.33	+0.4
1,868,208	+	yafD	OKFHMN_09995	0.33	+0.2
1,868,229	+	yafD	OKFHMN_09995	0.36	-0.3
1,868,238	-	yafD	OKFHMN_09995	0.37	+0.3
1,868,240	+	yafD	OKFHMN_09995	0.37	+0.0
1,868,240	+	yafD	OKFHMN_09995	0.37	+0.6
1,868,241	-	yafD	OKFHMN_09995	0.37	-0.7
1,868,280	-	yafD	OKFHMN_09995	0.42	-1.6
1,868,282	+	yafD	OKFHMN_09995	0.43	+0.4
1,868,292	+	yafD	OKFHMN_09995	0.44	-1.7
1,868,370	+	yafD	OKFHMN_09995	0.54	+0.8
1,868,383	+	yafD	OKFHMN_09995	0.55	+0.8
1,868,383	+	yafD	OKFHMN_09995	0.55	+0.3
1,868,384	-	yafD	OKFHMN_09995	0.55	-0.8
1,868,384	-	yafD	OKFHMN_09995	0.55	-0.3
1,868,467	+	yafD	OKFHMN_09995	0.66	+2.1
1,868,467	+	yafD	OKFHMN_09995	0.66	+0.4
1,868,468	-	yafD	OKFHMN_09995	0.66	+0.3
1,868,468	-	yafD	OKFHMN_09995	0.66	+1.4
1,868,471	+	yafD	OKFHMN_09995	0.66	-0.6
1,868,471	+	yafD	OKFHMN_09995	0.66	+0.9
1,868,472	-	yafD	OKFHMN_09995	0.66	+0.1
1,868,472	-	yafD	OKFHMN_09995	0.66	-0.0
1,868,472	-	yafD	OKFHMN_09995	0.66	-0.0
1,868,521	-	yafD	OKFHMN_09995	0.72	-0.4
1,868,590	-	yafD	OKFHMN_09995	0.81	+0.0
1,868,590	-	yafD	OKFHMN_09995	0.81	+0.5
1,868,590	-	yafD	OKFHMN_09995	0.81	+0.8
1,868,628	+	yafD	OKFHMN_09995	0.86	+0.6
1,868,725	+				-0.0
1,868,726	-				+0.1
1,868,726	-				-0.0
1,868,760	+				-0.5
1,868,763	+				+1.1
1,868,764	-				+0.2
1,868,794	+				+0.0
1,868,794	+				-0.8
1,868,839	+				-0.0
1,868,840	-				-0.2
1,868,840	-				+0.3
1,868,840	-				-2.4
1,868,845	+				-1.2
1,868,850	-				-0.4
1,868,897	+				+2.6
1,868,898	-				+0.9
1,868,898	-				+1.0
1,868,911	+				-0.0
1,869,233	+	yafC	OKFHMN_10000	0.27	-0.0
1,869,234	-	yafC	OKFHMN_10000	0.28	-0.2
1,869,318	-	yafC	OKFHMN_10000	0.37	+1.6
1,869,442	+	yafC	OKFHMN_10000	0.50	+0.2
1,869,443	-	yafC	OKFHMN_10000	0.50	-0.8
1,869,495	+	yafC	OKFHMN_10000	0.56	+0.1
1,869,498	-	yafC	OKFHMN_10000	0.56	-0.0
1,869,535	+	yafC	OKFHMN_10000	0.60	+0.0
1,869,613	+	yafC	OKFHMN_10000	0.69	+0.6
1,869,613	+	yafC	OKFHMN_10000	0.69	-0.8
1,869,613	+	yafC	OKFHMN_10000	0.69	-0.5
1,869,628	-	yafC	OKFHMN_10000	0.71	+0.4
1,869,705	+	yafC	OKFHMN_10000	0.79	-0.4
1,869,705	+	yafC	OKFHMN_10000	0.79	-1.0
1,869,707	+	yafC	OKFHMN_10000	0.79	+0.3
1,869,758	+	yafC	OKFHMN_10000	0.85	+0.2
1,869,818	+				+0.3
1,869,967	+				+0.2
1,870,006	+	dkgB	OKFHMN_10005	0.14	+0.1
1,870,064	-	dkgB	OKFHMN_10005	0.21	+0.4
1,870,150	-	dkgB	OKFHMN_10005	0.32	-0.8
1,870,164	+	dkgB	OKFHMN_10005	0.34	-0.2
1,870,164	+	dkgB	OKFHMN_10005	0.34	-1.5
1,870,165	-	dkgB	OKFHMN_10005	0.34	+0.3
1,870,171	+	dkgB	OKFHMN_10005	0.35	+1.8
1,870,172	-	dkgB	OKFHMN_10005	0.35	+1.6
1,870,172	-	dkgB	OKFHMN_10005	0.35	+0.3
1,870,172	-	dkgB	OKFHMN_10005	0.35	+0.6
1,870,175	-	dkgB	OKFHMN_10005	0.35	-0.7
1,870,250	-	dkgB	OKFHMN_10005	0.44	-0.0
1,870,366	+	dkgB	OKFHMN_10005	0.59	-0.7
1,870,429	-	dkgB	OKFHMN_10005	0.67	+0.6
1,870,460	+	dkgB	OKFHMN_10005	0.71	+0.2
1,870,582	-	dkgB	OKFHMN_10005	0.86	-1.4
1,870,696	+				-0.5
1,870,696	+				+1.0
1,870,856	-				+0.4
1,870,856	-				-0.0