Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09945

Experiment: JK42

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nthcp and OKFHMN_09935 are separated by 20 nucleotidesOKFHMN_09935 and OKFHMN_09940 are separated by 78 nucleotidesOKFHMN_09940 and OKFHMN_09945 are separated by 2 nucleotidesOKFHMN_09945 and OKFHMN_09950 overlap by 4 nucleotidesOKFHMN_09950 and OKFHMN_09955 are separated by 184 nucleotides OKFHMN_09930: hcp - type VI secretion system tube protein Hcp, at 1,859,180 to 1,859,659 hcp OKFHMN_09935: OKFHMN_09935 - Peptidoglycan-binding protein LysM, at 1,859,680 to 1,859,901 _09935 OKFHMN_09940: OKFHMN_09940 - Peptidoglycan-binding protein LysM, at 1,859,980 to 1,860,576 _09940 OKFHMN_09945: OKFHMN_09945 - hypothetical protein, at 1,860,579 to 1,861,028 _09945 OKFHMN_09950: OKFHMN_09950 - hypothetical protein, at 1,861,025 to 1,861,321 _09950 OKFHMN_09955: OKFHMN_09955 - Uncharacterized lipoprotein YafT, at 1,861,506 to 1,862,306 _09955 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -1 0 1 2 3at 1859.597 kb on - strand, within hcpat 1859.973 kb on - strandat 1860.061 kb on - strand, within OKFHMN_09940at 1860.249 kb on + strand, within OKFHMN_09940at 1860.294 kb on + strand, within OKFHMN_09940at 1860.295 kb on - strand, within OKFHMN_09940at 1860.496 kb on + strand, within OKFHMN_09940at 1860.663 kb on - strand, within OKFHMN_09945at 1860.842 kb on + strand, within OKFHMN_09945at 1860.928 kb on + strand, within OKFHMN_09945at 1861.774 kb on - strand, within OKFHMN_09955at 1861.799 kb on - strand, within OKFHMN_09955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JK42
remove
1,859,597 - hcp OKFHMN_09930 0.87 -0.0
1,859,973 - +2.8
1,860,061 - OKFHMN_09940 0.14 +2.6
1,860,249 + OKFHMN_09940 0.45 +1.6
1,860,294 + OKFHMN_09940 0.53 -0.0
1,860,295 - OKFHMN_09940 0.53 +0.8
1,860,496 + OKFHMN_09940 0.86 -0.8
1,860,663 - OKFHMN_09945 0.19 +0.5
1,860,842 + OKFHMN_09945 0.58 +0.0
1,860,928 + OKFHMN_09945 0.78 +1.0
1,861,774 - OKFHMN_09955 0.33 +0.2
1,861,799 - OKFHMN_09955 0.37 +0.5

Or see this region's nucleotide sequence