Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arcC and ylbF overlap by 4 nucleotides ylbF and ylbE are separated by 10 nucleotides ylbE and fdrA are separated by 9 nucleotides
OKFHMN_07845: arcC - carbamate kinase, at 1,429,471 to 1,430,364
arcC
OKFHMN_07850: ylbF - Uncharacterized protein YlbF, at 1,430,361 to 1,431,176
ylbF
OKFHMN_07855: ylbE - Uncharacterized protein YlbE, at 1,431,187 to 1,432,446
ylbE
OKFHMN_07860: fdrA - Protein FdrA, at 1,432,456 to 1,434,123
fdrA
Position (kb)
1431
1432
1433 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1430.327 kb on - strand at 1430.380 kb on - strand at 1430.465 kb on + strand, within ylbF at 1430.538 kb on + strand, within ylbF at 1430.538 kb on + strand, within ylbF at 1430.538 kb on + strand, within ylbF at 1430.539 kb on - strand, within ylbF at 1430.619 kb on + strand, within ylbF at 1430.630 kb on - strand, within ylbF at 1430.632 kb on + strand, within ylbF at 1430.633 kb on - strand, within ylbF at 1430.767 kb on - strand, within ylbF at 1430.882 kb on + strand, within ylbF at 1430.985 kb on + strand, within ylbF at 1431.111 kb on + strand at 1431.143 kb on + strand at 1431.178 kb on - strand at 1431.321 kb on + strand, within ylbE at 1431.322 kb on - strand, within ylbE at 1431.403 kb on - strand, within ylbE at 1431.416 kb on + strand, within ylbE at 1431.611 kb on - strand, within ylbE at 1431.663 kb on + strand, within ylbE at 1431.857 kb on - strand, within ylbE at 1431.876 kb on + strand, within ylbE at 1431.907 kb on - strand, within ylbE at 1431.930 kb on + strand, within ylbE at 1431.971 kb on - strand, within ylbE at 1431.973 kb on + strand, within ylbE at 1431.982 kb on + strand, within ylbE at 1432.134 kb on + strand, within ylbE at 1432.135 kb on - strand, within ylbE at 1432.440 kb on + strand at 1432.440 kb on + strand at 1432.440 kb on + strand at 1432.472 kb on - strand at 1432.549 kb on + strand at 1432.649 kb on - strand, within fdrA at 1432.649 kb on - strand, within fdrA at 1432.778 kb on + strand, within fdrA at 1432.778 kb on + strand, within fdrA at 1432.937 kb on - strand, within fdrA at 1432.937 kb on - strand, within fdrA at 1432.937 kb on - strand, within fdrA at 1433.078 kb on - strand, within fdrA at 1433.115 kb on - strand, within fdrA at 1433.127 kb on + strand, within fdrA at 1433.158 kb on - strand, within fdrA at 1433.257 kb on - strand, within fdrA at 1433.258 kb on + strand, within fdrA at 1433.264 kb on - strand, within fdrA
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 1,430,327 - -1.5 1,430,380 - -2.0 1,430,465 + ylbF OKFHMN_07850 0.13 -0.7 1,430,538 + ylbF OKFHMN_07850 0.22 -0.3 1,430,538 + ylbF OKFHMN_07850 0.22 +1.8 1,430,538 + ylbF OKFHMN_07850 0.22 -0.2 1,430,539 - ylbF OKFHMN_07850 0.22 -0.3 1,430,619 + ylbF OKFHMN_07850 0.32 +0.1 1,430,630 - ylbF OKFHMN_07850 0.33 +0.5 1,430,632 + ylbF OKFHMN_07850 0.33 +0.5 1,430,633 - ylbF OKFHMN_07850 0.33 -0.1 1,430,767 - ylbF OKFHMN_07850 0.50 +0.4 1,430,882 + ylbF OKFHMN_07850 0.64 +0.4 1,430,985 + ylbF OKFHMN_07850 0.76 -0.4 1,431,111 + -0.6 1,431,143 + +0.8 1,431,178 - +0.1 1,431,321 + ylbE OKFHMN_07855 0.11 -0.5 1,431,322 - ylbE OKFHMN_07855 0.11 -0.0 1,431,403 - ylbE OKFHMN_07855 0.17 +0.3 1,431,416 + ylbE OKFHMN_07855 0.18 +0.4 1,431,611 - ylbE OKFHMN_07855 0.34 +0.1 1,431,663 + ylbE OKFHMN_07855 0.38 -3.0 1,431,857 - ylbE OKFHMN_07855 0.53 -0.2 1,431,876 + ylbE OKFHMN_07855 0.55 +0.1 1,431,907 - ylbE OKFHMN_07855 0.57 -0.9 1,431,930 + ylbE OKFHMN_07855 0.59 -0.5 1,431,971 - ylbE OKFHMN_07855 0.62 -1.1 1,431,973 + ylbE OKFHMN_07855 0.62 -0.6 1,431,982 + ylbE OKFHMN_07855 0.63 +0.9 1,432,134 + ylbE OKFHMN_07855 0.75 +0.4 1,432,135 - ylbE OKFHMN_07855 0.75 -0.7 1,432,440 + -0.6 1,432,440 + -0.3 1,432,440 + -0.7 1,432,472 - -0.1 1,432,549 + +0.7 1,432,649 - fdrA OKFHMN_07860 0.12 +0.9 1,432,649 - fdrA OKFHMN_07860 0.12 -0.2 1,432,778 + fdrA OKFHMN_07860 0.19 -0.7 1,432,778 + fdrA OKFHMN_07860 0.19 +0.1 1,432,937 - fdrA OKFHMN_07860 0.29 -0.0 1,432,937 - fdrA OKFHMN_07860 0.29 +0.5 1,432,937 - fdrA OKFHMN_07860 0.29 -0.2 1,433,078 - fdrA OKFHMN_07860 0.37 +0.8 1,433,115 - fdrA OKFHMN_07860 0.40 -0.2 1,433,127 + fdrA OKFHMN_07860 0.40 +0.0 1,433,158 - fdrA OKFHMN_07860 0.42 -0.2 1,433,257 - fdrA OKFHMN_07860 0.48 +0.7 1,433,258 + fdrA OKFHMN_07860 0.48 +0.3 1,433,264 - fdrA OKFHMN_07860 0.48 -0.9
Or see this region's nucleotide sequence