Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04825

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSer_trna and OKFHMN_04820 are separated by 104 nucleotidesOKFHMN_04820 and tccP are separated by 638 nucleotidestccP and OKFHMN_04830 are separated by 124 nucleotidesOKFHMN_04830 and OKFHMN_04835 are separated by 1 nucleotides OKFHMN_04815: Ser_trna - tRNA-Ser(tga), at 805,193 to 805,280 _trna OKFHMN_04820: OKFHMN_04820 - hypothetical protein, at 805,385 to 805,567 _04820 OKFHMN_04825: tccP - Tir-cytoskeleton coupling protein TccP2, at 806,206 to 806,916 tccP OKFHMN_04830: OKFHMN_04830 - phage tail protein, at 807,041 to 807,310 _04830 OKFHMN_04835: OKFHMN_04835 - phage tail protein, at 807,312 to 808,625 _04835 Position (kb) 806 807Strain fitness (log2 ratio) -2 -1 0 1at 805.334 kb on + strandat 805.357 kb on + strandat 805.493 kb on + strand, within OKFHMN_04820at 805.493 kb on + strand, within OKFHMN_04820at 805.689 kb on - strandat 805.834 kb on + strandat 805.928 kb on + strandat 805.940 kb on + strandat 806.098 kb on + strandat 806.099 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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805,334 + +0.3
805,357 + -2.0
805,493 + OKFHMN_04820 0.59 -0.1
805,493 + OKFHMN_04820 0.59 -1.0
805,689 - -0.5
805,834 + +0.3
805,928 + +1.3
805,940 + -1.3
806,098 + +0.6
806,099 - +0.3

Or see this region's nucleotide sequence