Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03750

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsolA and yceO are separated by 47 nucleotidesyceO and yceJ are separated by 260 nucleotidesyceJ and yceI are separated by 3 nucleotides OKFHMN_03745: solA - N-methyl-L-tryptophan oxidase, at 596,380 to 597,498 solA OKFHMN_03750: yceO - Uncharacterized protein YceO, at 597,546 to 597,659 yceO OKFHMN_03755: yceJ - Cytochrome b561-like protein, at 597,920 to 598,486 yceJ OKFHMN_03760: yceI - YceI family protein, at 598,490 to 599,065 yceI Position (kb) 597 598Strain fitness (log2 ratio) -1 0 1 2at 596.924 kb on + strand, within solAat 597.026 kb on + strand, within solAat 597.121 kb on + strand, within solAat 597.168 kb on + strand, within solAat 597.496 kb on + strandat 597.579 kb on - strand, within yceOat 597.630 kb on - strand, within yceOat 598.075 kb on + strand, within yceJat 598.134 kb on + strand, within yceJat 598.211 kb on + strand, within yceJat 598.211 kb on + strand, within yceJat 598.215 kb on + strand, within yceJat 598.216 kb on - strand, within yceJat 598.429 kb on + strand, within yceJat 598.632 kb on + strand, within yceI

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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596,924 + solA OKFHMN_03745 0.49 -0.9
597,026 + solA OKFHMN_03745 0.58 -0.4
597,121 + solA OKFHMN_03745 0.66 +0.2
597,168 + solA OKFHMN_03745 0.70 +0.0
597,496 + -0.3
597,579 - yceO OKFHMN_03750 0.29 -0.3
597,630 - yceO OKFHMN_03750 0.74 +0.7
598,075 + yceJ OKFHMN_03755 0.27 -0.5
598,134 + yceJ OKFHMN_03755 0.38 -0.8
598,211 + yceJ OKFHMN_03755 0.51 +0.5
598,211 + yceJ OKFHMN_03755 0.51 +1.3
598,215 + yceJ OKFHMN_03755 0.52 -1.0
598,216 - yceJ OKFHMN_03755 0.52 -0.5
598,429 + yceJ OKFHMN_03755 0.90 +1.9
598,632 + yceI OKFHMN_03760 0.25 -0.6

Or see this region's nucleotide sequence