Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_03290 and OKFHMN_03300 are separated by 314 nucleotides OKFHMN_03300 and OKFHMN_03305 overlap by 4 nucleotides OKFHMN_03305 and OKFHMN_03310 are separated by 453 nucleotides
OKFHMN_03290: OKFHMN_03290 - sialate O-acetylesterase, at 519,069 to 521,006
_03290
OKFHMN_03300: OKFHMN_03300 - TciB/TerA-like protein, at 521,321 to 521,488
_03300
OKFHMN_03305: OKFHMN_03305 - TciA/TerB-like protein, at 521,485 to 521,631
_03305
OKFHMN_03310: OKFHMN_03310 - antitermination protein, at 522,085 to 522,906
_03310
Position (kb) 521
522 Strain fitness (log2 ratio) -1
0
1
2
3 at 520.345 kb on + strand, within OKFHMN_03290 at 520.346 kb on - strand, within OKFHMN_03290 at 520.346 kb on - strand, within OKFHMN_03290 at 520.346 kb on - strand, within OKFHMN_03290 at 520.374 kb on - strand, within OKFHMN_03290 at 520.405 kb on + strand, within OKFHMN_03290 at 520.405 kb on + strand, within OKFHMN_03290 at 520.406 kb on - strand, within OKFHMN_03290 at 520.406 kb on - strand, within OKFHMN_03290 at 520.683 kb on - strand, within OKFHMN_03290 at 520.732 kb on + strand, within OKFHMN_03290 at 520.771 kb on + strand, within OKFHMN_03290 at 520.777 kb on + strand, within OKFHMN_03290 at 520.778 kb on - strand, within OKFHMN_03290 at 521.896 kb on - strand at 522.186 kb on + strand, within OKFHMN_03310 at 522.187 kb on - strand, within OKFHMN_03310 at 522.226 kb on - strand, within OKFHMN_03310 at 522.298 kb on - strand, within OKFHMN_03310 at 522.308 kb on - strand, within OKFHMN_03310 at 522.407 kb on - strand, within OKFHMN_03310
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 520,345 + OKFHMN_03290 0.66 -0.3 520,346 - OKFHMN_03290 0.66 -1.6 520,346 - OKFHMN_03290 0.66 +1.9 520,346 - OKFHMN_03290 0.66 -0.1 520,374 - OKFHMN_03290 0.67 +0.5 520,405 + OKFHMN_03290 0.69 -0.3 520,405 + OKFHMN_03290 0.69 +1.8 520,406 - OKFHMN_03290 0.69 +0.9 520,406 - OKFHMN_03290 0.69 -1.1 520,683 - OKFHMN_03290 0.83 -0.5 520,732 + OKFHMN_03290 0.86 +1.9 520,771 + OKFHMN_03290 0.88 -1.0 520,777 + OKFHMN_03290 0.88 -0.8 520,778 - OKFHMN_03290 0.88 -1.1 521,896 - +1.3 522,186 + OKFHMN_03310 0.12 -0.5 522,187 - OKFHMN_03310 0.12 +2.9 522,226 - OKFHMN_03310 0.17 -1.5 522,298 - OKFHMN_03310 0.26 +0.3 522,308 - OKFHMN_03310 0.27 +1.0 522,407 - OKFHMN_03310 0.39 +1.1
Or see this region's nucleotide sequence