Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02510

Experiment: JK42

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntacrR and fabI_F203V are separated by 476 nucleotidesfabI_F203V and yciW are separated by 143 nucleotides OKFHMN_02505: acrR - TetR family transcriptional regulator, at 392,128 to 392,694 acrR OKFHMN_02510: fabI_F203V - enoyl-[acyl-carrier-protein] reductase FabI, at 393,171 to 393,959 _F203V OKFHMN_02515: yciW - Uncharacterized protein YciW, at 394,103 to 395,230 yciW Position (kb) 393 394Strain fitness (log2 ratio) -1 0 1 2at 392.425 kb on - strand, within acrRat 392.596 kb on - strand, within acrRat 392.750 kb on + strandat 392.786 kb on + strandat 392.787 kb on - strandat 392.800 kb on - strandat 392.998 kb on + strandat 392.998 kb on + strandat 393.091 kb on + strandat 393.101 kb on + strandat 393.108 kb on + strandat 394.012 kb on - strandat 394.140 kb on - strandat 394.222 kb on - strand, within yciWat 394.412 kb on + strand, within yciWat 394.415 kb on + strand, within yciWat 394.430 kb on - strand, within yciWat 394.494 kb on - strand, within yciWat 394.749 kb on - strand, within yciWat 394.880 kb on - strand, within yciW

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JK42
remove
392,425 - acrR OKFHMN_02505 0.52 -0.4
392,596 - acrR OKFHMN_02505 0.83 -1.3
392,750 + +1.3
392,786 + -0.7
392,787 - +0.9
392,800 - +0.5
392,998 + +1.9
392,998 + +1.0
393,091 + +1.0
393,101 + +0.1
393,108 + -0.2
394,012 - +0.9
394,140 - +0.2
394,222 - yciW OKFHMN_02515 0.11 +0.7
394,412 + yciW OKFHMN_02515 0.27 -0.1
394,415 + yciW OKFHMN_02515 0.28 -0.2
394,430 - yciW OKFHMN_02515 0.29 -0.7
394,494 - yciW OKFHMN_02515 0.35 +0.3
394,749 - yciW OKFHMN_02515 0.57 -0.0
394,880 - yciW OKFHMN_02515 0.69 -1.0

Or see this region's nucleotide sequence