Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02505

Experiment: JK42

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntacrA and acrR are separated by 148 nucleotidesacrR and fabI_F203V are separated by 476 nucleotides OKFHMN_02500: acrA - efflux transporter periplasmic adaptor subunit, at 390,858 to 391,979 acrA OKFHMN_02505: acrR - TetR family transcriptional regulator, at 392,128 to 392,694 acrR OKFHMN_02510: fabI_F203V - enoyl-[acyl-carrier-protein] reductase FabI, at 393,171 to 393,959 _F203V Position (kb) 392 393Strain fitness (log2 ratio) -1 0 1 2 3at 391.496 kb on + strand, within acrAat 391.801 kb on - strand, within acrAat 391.914 kb on - strandat 392.118 kb on - strandat 392.165 kb on - strandat 392.425 kb on - strand, within acrRat 392.596 kb on - strand, within acrRat 392.750 kb on + strandat 392.786 kb on + strandat 392.787 kb on - strandat 392.800 kb on - strandat 392.998 kb on + strandat 392.998 kb on + strandat 393.091 kb on + strandat 393.101 kb on + strandat 393.108 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JK42
remove
391,496 + acrA OKFHMN_02500 0.57 -0.0
391,801 - acrA OKFHMN_02500 0.84 +1.0
391,914 - -0.3
392,118 - +2.9
392,165 - +1.0
392,425 - acrR OKFHMN_02505 0.52 -0.4
392,596 - acrR OKFHMN_02505 0.83 -1.3
392,750 + +1.3
392,786 + -0.7
392,787 - +0.9
392,800 - +0.5
392,998 + +1.9
392,998 + +1.0
393,091 + +1.0
393,101 + +0.1
393,108 + -0.2

Or see this region's nucleotide sequence