Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_02100 and kilR are separated by 46 nucleotides kilR and OKFHMN_02120 overlap by 1 nucleotides OKFHMN_02120 and recE are separated by 80 nucleotides recE and recT overlap by 8 nucleotides
OKFHMN_02100: OKFHMN_02100 - transcriptional regulator, at 316,859 to 317,707
_02100
OKFHMN_02115: kilR - killing protein KilR, at 317,754 to 317,975
kilR
OKFHMN_02120: OKFHMN_02120 - Rtr1/RPAP2 family, at 317,975 to 318,145
_02120
OKFHMN_02125: recE - exodeoxyribonuclease VIII, at 318,226 to 320,895
recE
OKFHMN_02130: recT - recombination protein RecT, at 320,888 to 321,697
recT
Position (kb) 318
319
320
321 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 317.488 kb on + strand, within OKFHMN_02100 at 319.000 kb on - strand, within recE at 319.912 kb on + strand, within recE at 319.950 kb on + strand, within recE at 320.088 kb on + strand, within recE at 320.294 kb on + strand, within recE at 320.844 kb on + strand at 320.844 kb on + strand at 320.844 kb on + strand at 320.844 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 317,488 + OKFHMN_02100 0.74 +0.6 319,000 - recE OKFHMN_02125 0.29 -0.3 319,912 + recE OKFHMN_02125 0.63 -3.0 319,950 + recE OKFHMN_02125 0.65 -1.9 320,088 + recE OKFHMN_02125 0.70 -1.5 320,294 + recE OKFHMN_02125 0.77 -2.2 320,844 + -1.0 320,844 + -3.1 320,844 + +0.3 320,844 + -1.0
Or see this region's nucleotide sequence