Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01820

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnifJ and OKFHMN_01820 are separated by 365 nucleotidesOKFHMN_01820 and OKFHMN_01825 overlap by 26 nucleotidesOKFHMN_01825 and uspF are separated by 140 nucleotides OKFHMN_01810: nifJ - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 272,624 to 276,148 nifJ OKFHMN_01820: OKFHMN_01820 - Putative outer membrane protein, at 276,514 to 276,885 _01820 OKFHMN_01825: OKFHMN_01825 - hypothetical protein, at 276,860 to 277,627 _01825 OKFHMN_01830: uspF - universal stress protein UspF, at 277,768 to 278,202 uspF Position (kb) 276 277Strain fitness (log2 ratio) -1 0 1at 275.730 kb on - strand, within nifJat 277.145 kb on + strand, within OKFHMN_01825at 277.282 kb on + strand, within OKFHMN_01825

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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275,730 - nifJ OKFHMN_01810 0.88 -0.1
277,145 + OKFHMN_01825 0.37 +0.7
277,282 + OKFHMN_01825 0.55 -0.6

Or see this region's nucleotide sequence