Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydcI and trg are separated by 37 nucleotides trg and OKFHMN_01670 are separated by 340 nucleotides OKFHMN_01670 and yncP are separated by 17 nucleotides yncP and ydcA are separated by 25 nucleotides
OKFHMN_01655: ydcI - Uncharacterized HTH-type transcriptional regulator YdcI, at 238,486 to 239,409
ydcI
OKFHMN_01660: trg - methyl-accepting chemotaxis protein Trg, at 239,447 to 241,087
trg
OKFHMN_01670: OKFHMN_01670 - Regulatory protein mokB, at 241,428 to 241,595
_01670
OKFHMN_01675: yncP - Protein YncP, at 241,613 to 241,681
yncP
OKFHMN_01680: ydcA - Uncharacterized protein YdcA, at 241,707 to 241,880
ydcA
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 238.622 kb on + strand, within ydcI at 238.623 kb on - strand, within ydcI at 238.779 kb on + strand, within ydcI at 238.780 kb on - strand, within ydcI at 238.782 kb on + strand, within ydcI at 238.844 kb on + strand, within ydcI at 239.060 kb on + strand, within ydcI at 239.096 kb on + strand, within ydcI at 239.141 kb on + strand, within ydcI at 239.211 kb on + strand, within ydcI at 239.227 kb on + strand, within ydcI at 239.702 kb on - strand, within trg at 239.702 kb on - strand, within trg at 240.091 kb on - strand, within trg at 240.309 kb on - strand, within trg at 240.431 kb on - strand, within trg at 240.431 kb on - strand, within trg at 240.546 kb on - strand, within trg at 240.569 kb on - strand, within trg at 240.779 kb on - strand, within trg at 241.001 kb on + strand at 241.082 kb on - strand at 241.531 kb on - strand, within OKFHMN_01670 at 241.713 kb on - strand at 241.740 kb on - strand, within ydcA at 241.925 kb on - strand at 242.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 238,622 + ydcI OKFHMN_01655 0.15 -1.1 238,623 - ydcI OKFHMN_01655 0.15 +0.3 238,779 + ydcI OKFHMN_01655 0.32 +1.3 238,780 - ydcI OKFHMN_01655 0.32 +0.9 238,782 + ydcI OKFHMN_01655 0.32 +0.3 238,844 + ydcI OKFHMN_01655 0.39 -1.3 239,060 + ydcI OKFHMN_01655 0.62 -0.7 239,096 + ydcI OKFHMN_01655 0.66 +0.5 239,141 + ydcI OKFHMN_01655 0.71 +0.6 239,211 + ydcI OKFHMN_01655 0.78 +1.3 239,227 + ydcI OKFHMN_01655 0.80 +0.1 239,702 - trg OKFHMN_01660 0.16 +0.5 239,702 - trg OKFHMN_01660 0.16 -1.3 240,091 - trg OKFHMN_01660 0.39 +1.3 240,309 - trg OKFHMN_01660 0.53 -1.3 240,431 - trg OKFHMN_01660 0.60 +1.3 240,431 - trg OKFHMN_01660 0.60 -1.0 240,546 - trg OKFHMN_01660 0.67 -0.7 240,569 - trg OKFHMN_01660 0.68 +0.5 240,779 - trg OKFHMN_01660 0.81 -0.3 241,001 + +0.5 241,082 - -3.1 241,531 - OKFHMN_01670 0.61 -2.1 241,713 - -0.9 241,740 - ydcA OKFHMN_01680 0.19 +2.9 241,925 - +0.4 242,042 + -0.4
Or see this region's nucleotide sequence