Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01625

Experiment: JK42

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydcL and tehB are separated by 303 nucleotidestehB and tehA overlap by 4 nucleotidestehA and ydcK are separated by 123 nucleotides OKFHMN_01615: ydcL - Uncharacterized lipoprotein YdcL, at 230,430 to 231,098 ydcL OKFHMN_01620: tehB - tellurite resistance methyltransferase TehB, at 231,402 to 231,995 tehB OKFHMN_01625: tehA - dicarboxylate transporter/tellurite-resistance protein TehA, at 231,992 to 232,984 tehA OKFHMN_01630: ydcK - YdcK family protein, at 233,108 to 234,088 ydcK Position (kb) 231 232 233Strain fitness (log2 ratio) -1 0 1at 231.274 kb on - strandat 232.017 kb on - strandat 232.243 kb on - strand, within tehAat 232.574 kb on - strand, within tehAat 232.940 kb on - strandat 232.948 kb on - strandat 232.973 kb on - strandat 233.082 kb on + strandat 233.082 kb on + strandat 233.086 kb on - strandat 233.107 kb on + strandat 233.223 kb on + strand, within ydcKat 233.266 kb on - strand, within ydcKat 233.844 kb on + strand, within ydcK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JK42
remove
231,274 - +1.3
232,017 - +0.5
232,243 - tehA OKFHMN_01625 0.25 +0.4
232,574 - tehA OKFHMN_01625 0.59 -0.3
232,940 - +0.3
232,948 - +0.4
232,973 - -0.3
233,082 + +0.6
233,082 + -0.1
233,086 - +0.3
233,107 + +0.7
233,223 + ydcK OKFHMN_01630 0.12 -0.8
233,266 - ydcK OKFHMN_01630 0.16 -1.3
233,844 + ydcK OKFHMN_01630 0.75 +0.7

Or see this region's nucleotide sequence