Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01095

Experiment: JK42

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeA and yneK are separated by 150 nucleotidesyneK and yneK are separated by 78 nucleotidesyneK and yneJ are separated by 77 nucleotides OKFHMN_01090: ydeA - L-arabinose MFS transporter, at 105,977 to 107,167 ydeA OKFHMN_01095: yneK - putative protein YneK, at 107,318 to 107,566 yneK OKFHMN_01100: yneK - putative protein YneK, at 107,645 to 108,433 yneK OKFHMN_01105: yneJ - Uncharacterized HTH-type transcriptional regulator YneJ, at 108,511 to 109,392 yneJ Position (kb) 107 108Strain fitness (log2 ratio) -1 0 1at 106.334 kb on - strand, within ydeAat 106.477 kb on - strand, within ydeAat 106.477 kb on - strand, within ydeAat 106.525 kb on - strand, within ydeAat 106.998 kb on + strand, within ydeAat 106.999 kb on - strand, within ydeA

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Per-strain Table

Position Strand Gene LocusTag Fraction JK42
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106,334 - ydeA OKFHMN_01090 0.30 -1.0
106,477 - ydeA OKFHMN_01090 0.42 +1.3
106,477 - ydeA OKFHMN_01090 0.42 +1.3
106,525 - ydeA OKFHMN_01090 0.46 -0.1
106,998 + ydeA OKFHMN_01090 0.86 +0.8
106,999 - ydeA OKFHMN_01090 0.86 +0.9

Or see this region's nucleotide sequence