Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_00645 and OKFHMN_00650 overlap by 8 nucleotides OKFHMN_00650 and OKFHMN_00655 overlap by 11 nucleotides OKFHMN_00655 and OKFHMN_00660 overlap by 8 nucleotides OKFHMN_00660 and OKFHMN_00665 are separated by 5 nucleotides OKFHMN_00665 and OKFHMN_00670 overlap by 4 nucleotides
OKFHMN_00645: OKFHMN_00645 - host cell division inhibitor Icd-like protein, at 37,295 to 38,239
_00645
OKFHMN_00650: OKFHMN_00650 - hypothetical protein, at 38,232 to 38,444
_00650
OKFHMN_00655: OKFHMN_00655 - Putative prophage protein, at 38,434 to 38,898
_00655
OKFHMN_00660: OKFHMN_00660 - hypothetical protein, at 38,891 to 39,124
_00660
OKFHMN_00665: OKFHMN_00665 - DUF4222 domain-containing protein, at 39,130 to 39,429
_00665
OKFHMN_00670: OKFHMN_00670 - DNA primase, at 39,426 to 40,826
_00670
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 37.956 kb on + strand, within OKFHMN_00645 at 38.004 kb on - strand, within OKFHMN_00645 at 38.042 kb on - strand, within OKFHMN_00645 at 38.061 kb on + strand, within OKFHMN_00645 at 38.062 kb on - strand, within OKFHMN_00645 at 39.280 kb on + strand, within OKFHMN_00665 at 39.677 kb on + strand, within OKFHMN_00670 at 39.925 kb on + strand, within OKFHMN_00670 at 39.925 kb on + strand, within OKFHMN_00670 at 39.926 kb on - strand, within OKFHMN_00670 at 39.927 kb on + strand, within OKFHMN_00670 at 40.120 kb on - strand, within OKFHMN_00670
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 37,956 + OKFHMN_00645 0.70 +0.1 38,004 - OKFHMN_00645 0.75 -0.2 38,042 - OKFHMN_00645 0.79 -0.7 38,061 + OKFHMN_00645 0.81 +0.7 38,062 - OKFHMN_00645 0.81 +1.3 39,280 + OKFHMN_00665 0.50 +1.3 39,677 + OKFHMN_00670 0.18 +0.3 39,925 + OKFHMN_00670 0.36 -0.7 39,925 + OKFHMN_00670 0.36 +0.1 39,926 - OKFHMN_00670 0.36 -0.3 39,927 + OKFHMN_00670 0.36 +0.7 40,120 - OKFHMN_00670 0.50 -0.8
Or see this region's nucleotide sequence