Strain Fitness in Sphingobium sp. HT1-2 around GFF67

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF66 and GFF67 are separated by 203 nucleotidesGFF67 and GFF68 overlap by 4 nucleotidesGFF68 and GFF69 are separated by 166 nucleotides GFF66 - Cobyric acid synthase (EC 6.3.5.10), at 54,704 to 56,152 GFF66 GFF67 - hypothetical protein, at 56,356 to 57,999 GFF67 GFF68 - hypothetical protein, at 57,996 to 58,442 GFF68 GFF69 - putative PAS/PAC sensor protein, at 58,609 to 59,517 GFF69 Position (kb) 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 55.376 kb on + strand, within GFF66at 55.389 kb on - strand, within GFF66at 55.441 kb on - strand, within GFF66at 55.457 kb on - strand, within GFF66at 55.489 kb on + strand, within GFF66at 55.497 kb on - strand, within GFF66at 55.497 kb on - strand, within GFF66at 55.554 kb on - strand, within GFF66at 55.600 kb on + strand, within GFF66at 55.652 kb on - strand, within GFF66at 55.683 kb on - strand, within GFF66at 55.740 kb on - strand, within GFF66at 55.740 kb on - strand, within GFF66at 55.785 kb on + strand, within GFF66at 55.803 kb on - strand, within GFF66at 55.815 kb on + strand, within GFF66at 55.916 kb on - strand, within GFF66at 55.916 kb on - strand, within GFF66at 56.040 kb on + strandat 56.066 kb on - strandat 56.080 kb on - strandat 56.153 kb on + strandat 56.166 kb on - strandat 56.180 kb on + strandat 56.188 kb on - strandat 56.197 kb on - strandat 56.263 kb on - strandat 56.368 kb on + strandat 56.413 kb on + strandat 56.419 kb on - strandat 56.419 kb on - strandat 56.421 kb on - strandat 56.421 kb on - strandat 56.421 kb on - strandat 56.421 kb on - strandat 56.430 kb on + strandat 56.438 kb on - strandat 56.443 kb on - strandat 56.446 kb on + strandat 56.474 kb on + strandat 56.474 kb on + strandat 56.475 kb on - strandat 56.482 kb on - strandat 56.482 kb on - strandat 56.482 kb on - strandat 56.482 kb on - strandat 56.531 kb on - strand, within GFF67at 56.538 kb on + strand, within GFF67at 56.543 kb on + strand, within GFF67at 56.544 kb on - strand, within GFF67at 56.557 kb on - strand, within GFF67at 56.568 kb on + strand, within GFF67at 56.568 kb on + strand, within GFF67at 56.568 kb on + strand, within GFF67at 56.576 kb on - strand, within GFF67at 56.576 kb on - strand, within GFF67at 56.582 kb on + strand, within GFF67at 56.590 kb on - strand, within GFF67at 56.592 kb on + strand, within GFF67at 56.592 kb on + strand, within GFF67at 56.608 kb on - strand, within GFF67at 56.609 kb on + strand, within GFF67at 56.609 kb on + strand, within GFF67at 56.614 kb on + strand, within GFF67at 56.647 kb on - strand, within GFF67at 56.666 kb on + strand, within GFF67at 56.690 kb on - strand, within GFF67at 56.693 kb on + strand, within GFF67at 56.693 kb on + strand, within GFF67at 56.700 kb on - strand, within GFF67at 56.700 kb on - strand, within GFF67at 56.700 kb on - strand, within GFF67at 56.700 kb on - strand, within GFF67at 56.701 kb on - strand, within GFF67at 56.701 kb on - strand, within GFF67at 56.812 kb on - strand, within GFF67at 56.830 kb on + strand, within GFF67at 56.838 kb on - strand, within GFF67at 56.845 kb on + strand, within GFF67at 56.845 kb on - strand, within GFF67at 56.898 kb on + strand, within GFF67at 56.906 kb on - strand, within GFF67at 56.940 kb on + strand, within GFF67at 56.967 kb on - strand, within GFF67at 56.974 kb on + strand, within GFF67at 56.974 kb on + strand, within GFF67at 56.974 kb on + strand, within GFF67at 56.977 kb on - strand, within GFF67at 56.977 kb on - strand, within GFF67at 56.977 kb on - strand, within GFF67at 56.977 kb on - strand, within GFF67at 56.982 kb on - strand, within GFF67at 56.982 kb on - strand, within GFF67at 56.982 kb on - strand, within GFF67at 56.982 kb on - strand, within GFF67at 56.982 kb on - strand, within GFF67at 56.982 kb on - strand, within GFF67at 56.982 kb on - strand, within GFF67at 56.982 kb on - strand, within GFF67at 56.989 kb on - strand, within GFF67at 57.019 kb on + strand, within GFF67at 57.019 kb on + strand, within GFF67at 57.019 kb on + strand, within GFF67at 57.019 kb on + strand, within GFF67at 57.019 kb on + strand, within GFF67at 57.027 kb on - strand, within GFF67at 57.027 kb on - strand, within GFF67at 57.027 kb on - strand, within GFF67at 57.027 kb on - strand, within GFF67at 57.027 kb on - strand, within GFF67at 57.027 kb on - strand, within GFF67at 57.027 kb on - strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.029 kb on + strand, within GFF67at 57.034 kb on + strand, within GFF67at 57.034 kb on + strand, within GFF67at 57.037 kb on - strand, within GFF67at 57.037 kb on - strand, within GFF67at 57.037 kb on - strand, within GFF67at 57.037 kb on - strand, within GFF67at 57.037 kb on - strand, within GFF67at 57.039 kb on + strand, within GFF67at 57.039 kb on + strand, within GFF67at 57.039 kb on + strand, within GFF67at 57.042 kb on - strand, within GFF67at 57.044 kb on + strand, within GFF67at 57.068 kb on + strand, within GFF67at 57.073 kb on + strand, within GFF67at 57.073 kb on + strand, within GFF67at 57.073 kb on + strand, within GFF67at 57.073 kb on + strand, within GFF67at 57.078 kb on + strand, within GFF67at 57.081 kb on - strand, within GFF67at 57.081 kb on - strand, within GFF67at 57.101 kb on - strand, within GFF67at 57.130 kb on + strand, within GFF67at 57.130 kb on + strand, within GFF67at 57.130 kb on + strand, within GFF67at 57.130 kb on + strand, within GFF67at 57.138 kb on - strand, within GFF67at 57.138 kb on - strand, within GFF67at 57.138 kb on - strand, within GFF67at 57.158 kb on + strand, within GFF67at 57.158 kb on + strand, within GFF67at 57.175 kb on + strand, within GFF67at 57.178 kb on - strand, within GFF67at 57.183 kb on - strand, within GFF67at 57.197 kb on + strand, within GFF67at 57.269 kb on + strand, within GFF67at 57.274 kb on + strand, within GFF67at 57.295 kb on + strand, within GFF67at 57.315 kb on - strand, within GFF67at 57.386 kb on + strand, within GFF67at 57.394 kb on - strand, within GFF67at 57.394 kb on - strand, within GFF67at 57.394 kb on - strand, within GFF67at 57.394 kb on - strand, within GFF67at 57.399 kb on - strand, within GFF67at 57.433 kb on - strand, within GFF67at 57.441 kb on + strand, within GFF67at 57.449 kb on - strand, within GFF67at 57.449 kb on - strand, within GFF67at 57.449 kb on - strand, within GFF67at 57.449 kb on - strand, within GFF67at 57.449 kb on - strand, within GFF67at 57.449 kb on - strand, within GFF67at 57.451 kb on + strand, within GFF67at 57.459 kb on + strand, within GFF67at 57.465 kb on + strand, within GFF67at 57.484 kb on - strand, within GFF67at 57.484 kb on - strand, within GFF67at 57.484 kb on - strand, within GFF67at 57.484 kb on - strand, within GFF67at 57.489 kb on - strand, within GFF67at 57.494 kb on - strand, within GFF67at 57.494 kb on - strand, within GFF67at 57.500 kb on + strand, within GFF67at 57.501 kb on - strand, within GFF67at 57.502 kb on + strand, within GFF67at 57.525 kb on + strand, within GFF67at 57.531 kb on + strand, within GFF67at 57.539 kb on - strand, within GFF67at 57.544 kb on + strand, within GFF67at 57.577 kb on + strand, within GFF67at 57.591 kb on + strand, within GFF67at 57.591 kb on - strand, within GFF67at 57.599 kb on - strand, within GFF67at 57.599 kb on - strand, within GFF67at 57.633 kb on + strand, within GFF67at 57.638 kb on + strand, within GFF67at 57.641 kb on - strand, within GFF67at 57.643 kb on + strand, within GFF67at 57.682 kb on + strand, within GFF67at 57.713 kb on + strand, within GFF67at 57.718 kb on + strand, within GFF67at 57.718 kb on + strand, within GFF67at 57.718 kb on + strand, within GFF67at 57.731 kb on - strand, within GFF67at 57.753 kb on + strand, within GFF67at 57.753 kb on + strand, within GFF67at 57.754 kb on + strand, within GFF67at 57.761 kb on - strand, within GFF67at 57.778 kb on + strand, within GFF67at 57.822 kb on - strand, within GFF67at 57.847 kb on - strandat 57.933 kb on + strandat 58.029 kb on + strandat 58.029 kb on + strandat 58.037 kb on - strandat 58.037 kb on - strandat 58.037 kb on - strandat 58.085 kb on + strand, within GFF68at 58.093 kb on - strand, within GFF68at 58.093 kb on - strand, within GFF68at 58.093 kb on - strand, within GFF68at 58.103 kb on + strand, within GFF68at 58.103 kb on + strand, within GFF68at 58.105 kb on - strand, within GFF68at 58.145 kb on + strand, within GFF68at 58.158 kb on - strand, within GFF68at 58.228 kb on - strand, within GFF68at 58.282 kb on + strand, within GFF68at 58.290 kb on + strand, within GFF68at 58.305 kb on - strand, within GFF68at 58.329 kb on + strand, within GFF68at 58.335 kb on - strand, within GFF68at 58.335 kb on - strand, within GFF68at 58.348 kb on - strand, within GFF68at 58.383 kb on + strand, within GFF68at 58.384 kb on + strand, within GFF68at 58.390 kb on + strand, within GFF68at 58.426 kb on - strandat 58.427 kb on + strandat 58.427 kb on + strandat 58.435 kb on - strandat 58.442 kb on + strandat 58.524 kb on - strandat 58.559 kb on + strandat 58.559 kb on + strandat 58.652 kb on + strandat 58.652 kb on + strandat 58.652 kb on + strandat 58.652 kb on + strandat 58.652 kb on + strandat 58.652 kb on + strandat 58.652 kb on + strandat 58.652 kb on + strandat 58.652 kb on + strandat 58.652 kb on + strandat 58.652 kb on + strandat 58.660 kb on - strandat 58.660 kb on - strandat 58.660 kb on - strandat 58.660 kb on - strandat 58.660 kb on - strandat 58.660 kb on - strandat 58.665 kb on - strandat 58.665 kb on - strandat 58.735 kb on - strand, within GFF69at 58.754 kb on - strand, within GFF69at 58.769 kb on + strand, within GFF69at 58.777 kb on + strand, within GFF69at 58.785 kb on - strand, within GFF69at 58.826 kb on + strand, within GFF69at 58.838 kb on + strand, within GFF69at 58.847 kb on + strand, within GFF69at 58.852 kb on + strand, within GFF69at 58.857 kb on + strand, within GFF69at 58.857 kb on + strand, within GFF69at 58.862 kb on + strand, within GFF69at 58.881 kb on + strand, within GFF69at 58.891 kb on - strand, within GFF69at 58.929 kb on + strand, within GFF69at 58.973 kb on - strand, within GFF69

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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55,376 + GFF66 0.46 -0.2
55,389 - GFF66 0.47 -1.5
55,441 - GFF66 0.51 +0.1
55,457 - GFF66 0.52 -0.6
55,489 + GFF66 0.54 -2.6
55,497 - GFF66 0.55 -2.4
55,497 - GFF66 0.55 -0.4
55,554 - GFF66 0.59 -0.7
55,600 + GFF66 0.62 -0.2
55,652 - GFF66 0.65 -1.9
55,683 - GFF66 0.68 -0.2
55,740 - GFF66 0.71 -1.2
55,740 - GFF66 0.71 -2.5
55,785 + GFF66 0.75 +0.1
55,803 - GFF66 0.76 -0.2
55,815 + GFF66 0.77 -2.5
55,916 - GFF66 0.84 -2.4
55,916 - GFF66 0.84 -2.0
56,040 + -2.5
56,066 - -0.6
56,080 - -2.0
56,153 + -0.0
56,166 - -0.6
56,180 + -0.7
56,188 - -1.6
56,197 - -0.4
56,263 - +1.4
56,368 + +1.8
56,413 + -0.9
56,419 - -0.4
56,419 - -1.1
56,421 - +0.7
56,421 - +0.8
56,421 - -0.4
56,421 - -0.5
56,430 + +1.2
56,438 - -0.5
56,443 - +0.0
56,446 + -1.9
56,474 + -0.2
56,474 + -1.4
56,475 - +1.4
56,482 - +0.0
56,482 - +0.8
56,482 - -0.4
56,482 - -1.2
56,531 - GFF67 0.11 +0.3
56,538 + GFF67 0.11 -1.0
56,543 + GFF67 0.11 +0.7
56,544 - GFF67 0.11 -0.9
56,557 - GFF67 0.12 +0.4
56,568 + GFF67 0.13 +0.5
56,568 + GFF67 0.13 +1.3
56,568 + GFF67 0.13 -3.1
56,576 - GFF67 0.13 +0.7
56,576 - GFF67 0.13 -0.1
56,582 + GFF67 0.14 -0.2
56,590 - GFF67 0.14 +1.4
56,592 + GFF67 0.14 +0.4
56,592 + GFF67 0.14 -0.5
56,608 - GFF67 0.15 +0.6
56,609 + GFF67 0.15 +0.2
56,609 + GFF67 0.15 -0.7
56,614 + GFF67 0.16 -0.4
56,647 - GFF67 0.18 -1.4
56,666 + GFF67 0.19 -0.9
56,690 - GFF67 0.20 -0.4
56,693 + GFF67 0.20 +0.6
56,693 + GFF67 0.20 -2.5
56,700 - GFF67 0.21 +0.2
56,700 - GFF67 0.21 +0.2
56,700 - GFF67 0.21 +0.2
56,700 - GFF67 0.21 -2.1
56,701 - GFF67 0.21 -0.4
56,701 - GFF67 0.21 +0.6
56,812 - GFF67 0.28 -0.3
56,830 + GFF67 0.29 -0.2
56,838 - GFF67 0.29 +0.3
56,845 + GFF67 0.30 -2.4
56,845 - GFF67 0.30 -0.2
56,898 + GFF67 0.33 -1.5
56,906 - GFF67 0.33 +0.2
56,940 + GFF67 0.36 -0.8
56,967 - GFF67 0.37 +0.5
56,974 + GFF67 0.38 +1.8
56,974 + GFF67 0.38 +1.8
56,974 + GFF67 0.38 +0.5
56,977 - GFF67 0.38 -0.0
56,977 - GFF67 0.38 -0.2
56,977 - GFF67 0.38 -1.1
56,977 - GFF67 0.38 -0.7
56,982 - GFF67 0.38 -0.2
56,982 - GFF67 0.38 -1.3
56,982 - GFF67 0.38 -0.5
56,982 - GFF67 0.38 +0.3
56,982 - GFF67 0.38 +0.2
56,982 - GFF67 0.38 -0.1
56,982 - GFF67 0.38 +1.1
56,982 - GFF67 0.38 -1.2
56,989 - GFF67 0.39 -0.6
57,019 + GFF67 0.40 -0.3
57,019 + GFF67 0.40 -0.7
57,019 + GFF67 0.40 +0.5
57,019 + GFF67 0.40 -1.4
57,019 + GFF67 0.40 -0.8
57,027 - GFF67 0.41 +1.8
57,027 - GFF67 0.41 +0.0
57,027 - GFF67 0.41 -2.5
57,027 - GFF67 0.41 -1.6
57,027 - GFF67 0.41 +1.0
57,027 - GFF67 0.41 -0.7
57,027 - GFF67 0.41 -0.6
57,029 + GFF67 0.41 -1.8
57,029 + GFF67 0.41 -0.0
57,029 + GFF67 0.41 -0.7
57,029 + GFF67 0.41 -1.7
57,029 + GFF67 0.41 -0.7
57,029 + GFF67 0.41 +0.6
57,029 + GFF67 0.41 -1.9
57,029 + GFF67 0.41 -1.4
57,029 + GFF67 0.41 +0.7
57,029 + GFF67 0.41 -0.3
57,029 + GFF67 0.41 +1.3
57,029 + GFF67 0.41 -0.8
57,034 + GFF67 0.41 +0.4
57,034 + GFF67 0.41 +1.0
57,037 - GFF67 0.41 -0.7
57,037 - GFF67 0.41 -0.5
57,037 - GFF67 0.41 -0.0
57,037 - GFF67 0.41 -0.1
57,037 - GFF67 0.41 -0.9
57,039 + GFF67 0.42 +0.1
57,039 + GFF67 0.42 +0.3
57,039 + GFF67 0.42 +0.7
57,042 - GFF67 0.42 -0.4
57,044 + GFF67 0.42 +0.8
57,068 + GFF67 0.43 +0.4
57,073 + GFF67 0.44 +0.5
57,073 + GFF67 0.44 +1.7
57,073 + GFF67 0.44 -0.0
57,073 + GFF67 0.44 -0.1
57,078 + GFF67 0.44 -0.7
57,081 - GFF67 0.44 -2.7
57,081 - GFF67 0.44 +0.6
57,101 - GFF67 0.45 +0.7
57,130 + GFF67 0.47 -0.1
57,130 + GFF67 0.47 -0.2
57,130 + GFF67 0.47 -0.8
57,130 + GFF67 0.47 +0.5
57,138 - GFF67 0.48 -1.9
57,138 - GFF67 0.48 +0.3
57,138 - GFF67 0.48 +0.8
57,158 + GFF67 0.49 -0.5
57,158 + GFF67 0.49 -0.8
57,175 + GFF67 0.50 -1.6
57,178 - GFF67 0.50 +0.8
57,183 - GFF67 0.50 +0.2
57,197 + GFF67 0.51 +0.2
57,269 + GFF67 0.56 +0.6
57,274 + GFF67 0.56 +0.2
57,295 + GFF67 0.57 +0.8
57,315 - GFF67 0.58 -0.0
57,386 + GFF67 0.63 -1.2
57,394 - GFF67 0.63 -2.4
57,394 - GFF67 0.63 +0.5
57,394 - GFF67 0.63 -0.6
57,394 - GFF67 0.63 -1.7
57,399 - GFF67 0.63 +1.7
57,433 - GFF67 0.66 +0.5
57,441 + GFF67 0.66 -0.2
57,449 - GFF67 0.66 +1.2
57,449 - GFF67 0.66 +0.1
57,449 - GFF67 0.66 +0.0
57,449 - GFF67 0.66 -0.2
57,449 - GFF67 0.66 +0.7
57,449 - GFF67 0.66 +0.9
57,451 + GFF67 0.67 +1.2
57,459 + GFF67 0.67 -0.4
57,465 + GFF67 0.67 +0.8
57,484 - GFF67 0.69 +0.9
57,484 - GFF67 0.69 -0.1
57,484 - GFF67 0.69 -0.6
57,484 - GFF67 0.69 -0.9
57,489 - GFF67 0.69 +0.9
57,494 - GFF67 0.69 +0.6
57,494 - GFF67 0.69 +0.4
57,500 + GFF67 0.70 -0.5
57,501 - GFF67 0.70 -1.2
57,502 + GFF67 0.70 +0.6
57,525 + GFF67 0.71 +1.6
57,531 + GFF67 0.71 +1.7
57,539 - GFF67 0.72 +0.7
57,544 + GFF67 0.72 -0.1
57,577 + GFF67 0.74 +0.7
57,591 + GFF67 0.75 -0.0
57,591 - GFF67 0.75 -1.2
57,599 - GFF67 0.76 -1.3
57,599 - GFF67 0.76 +0.6
57,633 + GFF67 0.78 +0.2
57,638 + GFF67 0.78 +1.2
57,641 - GFF67 0.78 -2.6
57,643 + GFF67 0.78 -1.0
57,682 + GFF67 0.81 +1.3
57,713 + GFF67 0.83 -0.2
57,718 + GFF67 0.83 -0.3
57,718 + GFF67 0.83 +0.9
57,718 + GFF67 0.83 -0.7
57,731 - GFF67 0.84 -1.1
57,753 + GFF67 0.85 -0.0
57,753 + GFF67 0.85 -0.4
57,754 + GFF67 0.85 -0.8
57,761 - GFF67 0.85 -2.4
57,778 + GFF67 0.86 -0.6
57,822 - GFF67 0.89 +0.4
57,847 - -0.5
57,933 + -0.6
58,029 + -0.9
58,029 + -0.4
58,037 - -0.3
58,037 - +0.5
58,037 - -0.2
58,085 + GFF68 0.20 -0.0
58,093 - GFF68 0.22 +2.2
58,093 - GFF68 0.22 -0.5
58,093 - GFF68 0.22 -0.2
58,103 + GFF68 0.24 +0.6
58,103 + GFF68 0.24 -0.2
58,105 - GFF68 0.24 +1.0
58,145 + GFF68 0.33 -0.1
58,158 - GFF68 0.36 -0.0
58,228 - GFF68 0.52 +0.6
58,282 + GFF68 0.64 +0.1
58,290 + GFF68 0.66 +0.7
58,305 - GFF68 0.69 +0.9
58,329 + GFF68 0.74 -0.5
58,335 - GFF68 0.76 -1.9
58,335 - GFF68 0.76 +0.6
58,348 - GFF68 0.79 -0.7
58,383 + GFF68 0.87 -1.3
58,384 + GFF68 0.87 +0.3
58,390 + GFF68 0.88 +0.7
58,426 - +0.6
58,427 + +0.3
58,427 + +0.3
58,435 - -2.0
58,442 + +0.0
58,524 - -1.3
58,559 + +0.0
58,559 + -2.0
58,652 + +1.3
58,652 + -0.6
58,652 + -1.3
58,652 + -1.4
58,652 + +0.6
58,652 + -0.5
58,652 + -0.4
58,652 + -0.3
58,652 + -0.6
58,652 + -0.8
58,652 + -0.3
58,660 - -0.0
58,660 - -1.5
58,660 - -2.0
58,660 - -1.6
58,660 - +1.1
58,660 - -0.6
58,665 - -0.3
58,665 - +1.1
58,735 - GFF69 0.14 -1.5
58,754 - GFF69 0.16 +0.4
58,769 + GFF69 0.18 +0.1
58,777 + GFF69 0.18 +0.9
58,785 - GFF69 0.19 -0.9
58,826 + GFF69 0.24 -1.2
58,838 + GFF69 0.25 -0.2
58,847 + GFF69 0.26 +0.1
58,852 + GFF69 0.27 -0.7
58,857 + GFF69 0.27 +0.3
58,857 + GFF69 0.27 -1.7
58,862 + GFF69 0.28 +0.4
58,881 + GFF69 0.30 +1.4
58,891 - GFF69 0.31 +0.7
58,929 + GFF69 0.35 +0.3
58,973 - GFF69 0.40 -1.8

Or see this region's nucleotide sequence