Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5360 and GFF5361 are separated by 12 nucleotides GFF5361 and GFF5362 are separated by 3 nucleotides GFF5362 and GFF5363 are separated by 37 nucleotides GFF5363 and GFF5364 overlap by 4 nucleotides GFF5364 and GFF5365 are separated by 16 nucleotides
GFF5360 - Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-), at 5,345,779 to 5,347,173
GFF5360
GFF5361 - Membrane protein, at 5,347,186 to 5,347,971
GFF5361
GFF5362 - Sulfide:quinone oxidoreductase, Type II, at 5,347,975 to 5,349,558
GFF5362
GFF5363 - GENE II AND X PROTEINS, at 5,349,596 to 5,350,006
GFF5363
GFF5364 - hypothetical protein, at 5,350,003 to 5,350,209
GFF5364
GFF5365 - Putative transmembrane protein, at 5,350,226 to 5,350,672
GFF5365
Position (kb) 5347
5348
5349
5350 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5347.003 kb on + strand, within GFF5360 at 5347.013 kb on - strand, within GFF5360 at 5347.034 kb on - strand at 5347.048 kb on - strand at 5347.054 kb on + strand at 5347.064 kb on + strand at 5347.072 kb on - strand at 5347.072 kb on - strand at 5347.076 kb on + strand at 5347.082 kb on - strand at 5347.090 kb on - strand at 5347.127 kb on - strand at 5347.182 kb on + strand at 5347.208 kb on + strand at 5347.225 kb on - strand at 5347.261 kb on + strand at 5347.323 kb on - strand, within GFF5361 at 5347.323 kb on - strand, within GFF5361 at 5347.356 kb on - strand, within GFF5361 at 5347.371 kb on - strand, within GFF5361 at 5347.377 kb on + strand, within GFF5361 at 5347.384 kb on + strand, within GFF5361 at 5347.384 kb on + strand, within GFF5361 at 5347.384 kb on + strand, within GFF5361 at 5347.385 kb on - strand, within GFF5361 at 5347.392 kb on - strand, within GFF5361 at 5347.425 kb on + strand, within GFF5361 at 5347.446 kb on + strand, within GFF5361 at 5347.446 kb on + strand, within GFF5361 at 5347.454 kb on - strand, within GFF5361 at 5347.454 kb on - strand, within GFF5361 at 5347.454 kb on - strand, within GFF5361 at 5347.461 kb on - strand, within GFF5361 at 5347.466 kb on - strand, within GFF5361 at 5347.543 kb on + strand, within GFF5361 at 5347.543 kb on + strand, within GFF5361 at 5347.550 kb on + strand, within GFF5361 at 5347.581 kb on - strand, within GFF5361 at 5347.599 kb on - strand, within GFF5361 at 5347.674 kb on - strand, within GFF5361 at 5347.697 kb on - strand, within GFF5361 at 5347.697 kb on - strand, within GFF5361 at 5347.702 kb on - strand, within GFF5361 at 5347.727 kb on + strand, within GFF5361 at 5347.735 kb on - strand, within GFF5361 at 5347.735 kb on - strand, within GFF5361 at 5347.735 kb on - strand, within GFF5361 at 5347.735 kb on - strand, within GFF5361 at 5347.735 kb on - strand, within GFF5361 at 5347.735 kb on - strand, within GFF5361 at 5347.735 kb on - strand, within GFF5361 at 5347.735 kb on - strand, within GFF5361 at 5347.735 kb on - strand, within GFF5361 at 5347.812 kb on + strand, within GFF5361 at 5347.856 kb on + strand, within GFF5361 at 5347.874 kb on - strand, within GFF5361 at 5347.911 kb on + strand at 5347.911 kb on + strand at 5347.924 kb on - strand at 5347.924 kb on - strand at 5347.962 kb on + strand at 5347.986 kb on - strand at 5348.021 kb on + strand at 5348.031 kb on + strand at 5348.046 kb on - strand at 5348.055 kb on + strand at 5348.057 kb on + strand at 5348.071 kb on - strand at 5348.072 kb on + strand at 5348.081 kb on - strand at 5348.082 kb on + strand at 5348.090 kb on - strand at 5348.183 kb on - strand, within GFF5362 at 5348.231 kb on + strand, within GFF5362 at 5348.276 kb on - strand, within GFF5362 at 5348.301 kb on - strand, within GFF5362 at 5348.320 kb on - strand, within GFF5362 at 5348.337 kb on + strand, within GFF5362 at 5348.337 kb on + strand, within GFF5362 at 5348.345 kb on - strand, within GFF5362 at 5348.385 kb on + strand, within GFF5362 at 5348.386 kb on + strand, within GFF5362 at 5348.394 kb on - strand, within GFF5362 at 5348.432 kb on + strand, within GFF5362 at 5348.474 kb on - strand, within GFF5362 at 5348.568 kb on + strand, within GFF5362 at 5348.570 kb on + strand, within GFF5362 at 5348.570 kb on + strand, within GFF5362 at 5348.615 kb on + strand, within GFF5362 at 5348.615 kb on + strand, within GFF5362 at 5348.639 kb on + strand, within GFF5362 at 5348.639 kb on + strand, within GFF5362 at 5348.639 kb on + strand, within GFF5362 at 5348.639 kb on + strand, within GFF5362 at 5348.647 kb on - strand, within GFF5362 at 5348.647 kb on - strand, within GFF5362 at 5348.647 kb on - strand, within GFF5362 at 5348.647 kb on - strand, within GFF5362 at 5348.647 kb on - strand, within GFF5362 at 5348.647 kb on - strand, within GFF5362 at 5348.654 kb on + strand, within GFF5362 at 5348.670 kb on + strand, within GFF5362 at 5348.741 kb on + strand, within GFF5362 at 5348.752 kb on + strand, within GFF5362 at 5348.760 kb on + strand, within GFF5362 at 5348.794 kb on + strand, within GFF5362 at 5348.797 kb on + strand, within GFF5362 at 5348.800 kb on - strand, within GFF5362 at 5348.803 kb on - strand, within GFF5362 at 5348.805 kb on - strand, within GFF5362 at 5348.863 kb on + strand, within GFF5362 at 5348.863 kb on + strand, within GFF5362 at 5348.863 kb on + strand, within GFF5362 at 5348.871 kb on - strand, within GFF5362 at 5348.871 kb on - strand, within GFF5362 at 5348.943 kb on + strand, within GFF5362 at 5348.943 kb on + strand, within GFF5362 at 5349.004 kb on + strand, within GFF5362 at 5349.008 kb on + strand, within GFF5362 at 5349.013 kb on + strand, within GFF5362 at 5349.016 kb on - strand, within GFF5362 at 5349.023 kb on + strand, within GFF5362 at 5349.026 kb on - strand, within GFF5362 at 5349.046 kb on + strand, within GFF5362 at 5349.052 kb on - strand, within GFF5362 at 5349.052 kb on - strand, within GFF5362 at 5349.054 kb on - strand, within GFF5362 at 5349.054 kb on - strand, within GFF5362 at 5349.114 kb on + strand, within GFF5362 at 5349.207 kb on + strand, within GFF5362 at 5349.207 kb on + strand, within GFF5362 at 5349.212 kb on + strand, within GFF5362 at 5349.236 kb on + strand, within GFF5362 at 5349.244 kb on + strand, within GFF5362 at 5349.244 kb on - strand, within GFF5362 at 5349.244 kb on - strand, within GFF5362 at 5349.244 kb on - strand, within GFF5362 at 5349.309 kb on + strand, within GFF5362 at 5349.325 kb on - strand, within GFF5362 at 5349.328 kb on - strand, within GFF5362 at 5349.328 kb on - strand, within GFF5362 at 5349.328 kb on - strand, within GFF5362 at 5349.379 kb on + strand, within GFF5362 at 5349.379 kb on + strand, within GFF5362 at 5349.379 kb on + strand, within GFF5362 at 5349.379 kb on + strand, within GFF5362 at 5349.387 kb on - strand, within GFF5362 at 5349.387 kb on - strand, within GFF5362 at 5349.387 kb on - strand, within GFF5362 at 5349.387 kb on - strand, within GFF5362 at 5349.387 kb on - strand, within GFF5362 at 5349.387 kb on - strand, within GFF5362 at 5349.409 kb on - strand at 5349.424 kb on + strand at 5349.432 kb on - strand at 5349.476 kb on - strand at 5349.478 kb on - strand at 5349.478 kb on - strand at 5349.540 kb on - strand at 5349.545 kb on + strand at 5349.574 kb on - strand at 5349.634 kb on + strand at 5349.688 kb on + strand, within GFF5363 at 5349.688 kb on - strand, within GFF5363 at 5349.725 kb on - strand, within GFF5363 at 5349.742 kb on - strand, within GFF5363 at 5349.764 kb on + strand, within GFF5363 at 5349.769 kb on + strand, within GFF5363 at 5349.769 kb on + strand, within GFF5363 at 5349.777 kb on - strand, within GFF5363 at 5349.777 kb on - strand, within GFF5363 at 5349.777 kb on - strand, within GFF5363 at 5349.793 kb on - strand, within GFF5363 at 5349.821 kb on + strand, within GFF5363 at 5349.829 kb on - strand, within GFF5363 at 5349.829 kb on - strand, within GFF5363 at 5349.831 kb on + strand, within GFF5363 at 5349.853 kb on + strand, within GFF5363 at 5349.861 kb on - strand, within GFF5363 at 5349.902 kb on - strand, within GFF5363 at 5349.902 kb on - strand, within GFF5363 at 5349.902 kb on - strand, within GFF5363 at 5349.912 kb on - strand, within GFF5363 at 5349.912 kb on - strand, within GFF5363 at 5349.923 kb on - strand, within GFF5363 at 5349.930 kb on + strand, within GFF5363 at 5349.931 kb on + strand, within GFF5363 at 5349.938 kb on - strand, within GFF5363 at 5349.938 kb on - strand, within GFF5363 at 5349.955 kb on + strand, within GFF5363 at 5349.955 kb on + strand, within GFF5363 at 5349.955 kb on + strand, within GFF5363 at 5349.963 kb on - strand, within GFF5363 at 5349.963 kb on - strand, within GFF5363 at 5349.963 kb on - strand, within GFF5363 at 5349.968 kb on - strand at 5349.998 kb on + strand at 5349.998 kb on + strand at 5350.058 kb on - strand, within GFF5364 at 5350.058 kb on - strand, within GFF5364 at 5350.058 kb on - strand, within GFF5364 at 5350.058 kb on - strand, within GFF5364 at 5350.078 kb on + strand, within GFF5364 at 5350.078 kb on + strand, within GFF5364 at 5350.078 kb on + strand, within GFF5364 at 5350.086 kb on - strand, within GFF5364 at 5350.086 kb on - strand, within GFF5364 at 5350.086 kb on - strand, within GFF5364 at 5350.086 kb on - strand, within GFF5364 at 5350.086 kb on - strand, within GFF5364 at 5350.106 kb on + strand, within GFF5364 at 5350.128 kb on + strand, within GFF5364 at 5350.142 kb on + strand, within GFF5364 at 5350.153 kb on + strand, within GFF5364 at 5350.153 kb on + strand, within GFF5364 at 5350.168 kb on + strand, within GFF5364 at 5350.201 kb on - strand at 5350.248 kb on + strand at 5350.253 kb on + strand at 5350.266 kb on - strand at 5350.282 kb on + strand, within GFF5365 at 5350.289 kb on + strand, within GFF5365 at 5350.289 kb on + strand, within GFF5365 at 5350.290 kb on - strand, within GFF5365 at 5350.290 kb on - strand, within GFF5365 at 5350.320 kb on + strand, within GFF5365 at 5350.370 kb on - strand, within GFF5365 at 5350.383 kb on + strand, within GFF5365 at 5350.422 kb on - strand, within GFF5365 at 5350.462 kb on - strand, within GFF5365 at 5350.491 kb on - strand, within GFF5365 at 5350.496 kb on + strand, within GFF5365 at 5350.504 kb on - strand, within GFF5365 at 5350.524 kb on - strand, within GFF5365 at 5350.547 kb on + strand, within GFF5365 at 5350.555 kb on - strand, within GFF5365 at 5350.555 kb on - strand, within GFF5365 at 5350.555 kb on - strand, within GFF5365 at 5350.555 kb on - strand, within GFF5365 at 5350.555 kb on - strand, within GFF5365
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 5,347,003 + GFF5360 0.88 +0.7 5,347,013 - GFF5360 0.88 -0.9 5,347,034 - -0.2 5,347,048 - -0.8 5,347,054 + +0.0 5,347,064 + +0.9 5,347,072 - -0.7 5,347,072 - -0.5 5,347,076 + -0.3 5,347,082 - -0.6 5,347,090 - -0.8 5,347,127 - -2.6 5,347,182 + -0.3 5,347,208 + -0.4 5,347,225 - +0.3 5,347,261 + +0.0 5,347,323 - GFF5361 0.17 -0.4 5,347,323 - GFF5361 0.17 -0.5 5,347,356 - GFF5361 0.22 -2.1 5,347,371 - GFF5361 0.24 -0.5 5,347,377 + GFF5361 0.24 -0.4 5,347,384 + GFF5361 0.25 -0.3 5,347,384 + GFF5361 0.25 +0.1 5,347,384 + GFF5361 0.25 -3.8 5,347,385 - GFF5361 0.25 -0.5 5,347,392 - GFF5361 0.26 -2.6 5,347,425 + GFF5361 0.30 -0.7 5,347,446 + GFF5361 0.33 +0.6 5,347,446 + GFF5361 0.33 -0.2 5,347,454 - GFF5361 0.34 -0.7 5,347,454 - GFF5361 0.34 -0.7 5,347,454 - GFF5361 0.34 -0.3 5,347,461 - GFF5361 0.35 +0.5 5,347,466 - GFF5361 0.36 -0.8 5,347,543 + GFF5361 0.45 +0.5 5,347,543 + GFF5361 0.45 +0.2 5,347,550 + GFF5361 0.46 -0.7 5,347,581 - GFF5361 0.50 -0.2 5,347,599 - GFF5361 0.53 +0.3 5,347,674 - GFF5361 0.62 +1.0 5,347,697 - GFF5361 0.65 +1.2 5,347,697 - GFF5361 0.65 -0.4 5,347,702 - GFF5361 0.66 +0.3 5,347,727 + GFF5361 0.69 -0.2 5,347,735 - GFF5361 0.70 -1.3 5,347,735 - GFF5361 0.70 +0.1 5,347,735 - GFF5361 0.70 -0.5 5,347,735 - GFF5361 0.70 -0.1 5,347,735 - GFF5361 0.70 -0.2 5,347,735 - GFF5361 0.70 -0.0 5,347,735 - GFF5361 0.70 +0.1 5,347,735 - GFF5361 0.70 -3.0 5,347,735 - GFF5361 0.70 +0.6 5,347,812 + GFF5361 0.80 -1.3 5,347,856 + GFF5361 0.85 -1.1 5,347,874 - GFF5361 0.88 -0.9 5,347,911 + +0.0 5,347,911 + +0.1 5,347,924 - -0.2 5,347,924 - +0.4 5,347,962 + -1.0 5,347,986 - +1.4 5,348,021 + -0.8 5,348,031 + +1.0 5,348,046 - -1.3 5,348,055 + -1.4 5,348,057 + +0.7 5,348,071 - -0.5 5,348,072 + -1.1 5,348,081 - +2.0 5,348,082 + -0.1 5,348,090 - -2.0 5,348,183 - GFF5362 0.13 -1.7 5,348,231 + GFF5362 0.16 -0.7 5,348,276 - GFF5362 0.19 -0.1 5,348,301 - GFF5362 0.21 -1.3 5,348,320 - GFF5362 0.22 -0.3 5,348,337 + GFF5362 0.23 -0.5 5,348,337 + GFF5362 0.23 -2.8 5,348,345 - GFF5362 0.23 -0.0 5,348,385 + GFF5362 0.26 +0.2 5,348,386 + GFF5362 0.26 -1.0 5,348,394 - GFF5362 0.26 +0.1 5,348,432 + GFF5362 0.29 +0.1 5,348,474 - GFF5362 0.32 -0.4 5,348,568 + GFF5362 0.37 -1.9 5,348,570 + GFF5362 0.38 -0.2 5,348,570 + GFF5362 0.38 -0.5 5,348,615 + GFF5362 0.40 -2.2 5,348,615 + GFF5362 0.40 -0.6 5,348,639 + GFF5362 0.42 +1.1 5,348,639 + GFF5362 0.42 -0.2 5,348,639 + GFF5362 0.42 -1.1 5,348,639 + GFF5362 0.42 -0.0 5,348,647 - GFF5362 0.42 -1.8 5,348,647 - GFF5362 0.42 -1.3 5,348,647 - GFF5362 0.42 -1.5 5,348,647 - GFF5362 0.42 +1.2 5,348,647 - GFF5362 0.42 -0.6 5,348,647 - GFF5362 0.42 +0.1 5,348,654 + GFF5362 0.43 -0.2 5,348,670 + GFF5362 0.44 -1.2 5,348,741 + GFF5362 0.48 -1.5 5,348,752 + GFF5362 0.49 -0.2 5,348,760 + GFF5362 0.50 +0.6 5,348,794 + GFF5362 0.52 -0.0 5,348,797 + GFF5362 0.52 +0.5 5,348,800 - GFF5362 0.52 +0.7 5,348,803 - GFF5362 0.52 +0.1 5,348,805 - GFF5362 0.52 -1.4 5,348,863 + GFF5362 0.56 +0.0 5,348,863 + GFF5362 0.56 +0.8 5,348,863 + GFF5362 0.56 +0.7 5,348,871 - GFF5362 0.57 -0.3 5,348,871 - GFF5362 0.57 +0.9 5,348,943 + GFF5362 0.61 -0.4 5,348,943 + GFF5362 0.61 -0.7 5,349,004 + GFF5362 0.65 +0.5 5,349,008 + GFF5362 0.65 -1.1 5,349,013 + GFF5362 0.66 -0.6 5,349,016 - GFF5362 0.66 -1.3 5,349,023 + GFF5362 0.66 +0.6 5,349,026 - GFF5362 0.66 +0.0 5,349,046 + GFF5362 0.68 -0.6 5,349,052 - GFF5362 0.68 +0.5 5,349,052 - GFF5362 0.68 -1.8 5,349,054 - GFF5362 0.68 -0.5 5,349,054 - GFF5362 0.68 +0.3 5,349,114 + GFF5362 0.72 -0.2 5,349,207 + GFF5362 0.78 +1.5 5,349,207 + GFF5362 0.78 -1.3 5,349,212 + GFF5362 0.78 +1.7 5,349,236 + GFF5362 0.80 -2.4 5,349,244 + GFF5362 0.80 -0.8 5,349,244 - GFF5362 0.80 +0.5 5,349,244 - GFF5362 0.80 +0.2 5,349,244 - GFF5362 0.80 -0.0 5,349,309 + GFF5362 0.84 -0.9 5,349,325 - GFF5362 0.85 -1.0 5,349,328 - GFF5362 0.85 +0.5 5,349,328 - GFF5362 0.85 -0.5 5,349,328 - GFF5362 0.85 -1.1 5,349,379 + GFF5362 0.89 +0.2 5,349,379 + GFF5362 0.89 +0.3 5,349,379 + GFF5362 0.89 -0.1 5,349,379 + GFF5362 0.89 -0.4 5,349,387 - GFF5362 0.89 -0.1 5,349,387 - GFF5362 0.89 +0.2 5,349,387 - GFF5362 0.89 -0.2 5,349,387 - GFF5362 0.89 +0.4 5,349,387 - GFF5362 0.89 +0.1 5,349,387 - GFF5362 0.89 -0.9 5,349,409 - +1.2 5,349,424 + -0.5 5,349,432 - -0.2 5,349,476 - -0.2 5,349,478 - -0.0 5,349,478 - +0.6 5,349,540 - +0.2 5,349,545 + -1.7 5,349,574 - -0.6 5,349,634 + +0.2 5,349,688 + GFF5363 0.22 -0.1 5,349,688 - GFF5363 0.22 +0.7 5,349,725 - GFF5363 0.31 +1.5 5,349,742 - GFF5363 0.36 -2.2 5,349,764 + GFF5363 0.41 +1.0 5,349,769 + GFF5363 0.42 -1.0 5,349,769 + GFF5363 0.42 +0.2 5,349,777 - GFF5363 0.44 -0.2 5,349,777 - GFF5363 0.44 -1.5 5,349,777 - GFF5363 0.44 +0.5 5,349,793 - GFF5363 0.48 +0.3 5,349,821 + GFF5363 0.55 +0.2 5,349,829 - GFF5363 0.57 -0.1 5,349,829 - GFF5363 0.57 +0.9 5,349,831 + GFF5363 0.57 -2.3 5,349,853 + GFF5363 0.63 -0.2 5,349,861 - GFF5363 0.64 +0.6 5,349,902 - GFF5363 0.74 +0.2 5,349,902 - GFF5363 0.74 -0.3 5,349,902 - GFF5363 0.74 -0.8 5,349,912 - GFF5363 0.77 -0.0 5,349,912 - GFF5363 0.77 -2.5 5,349,923 - GFF5363 0.80 -0.9 5,349,930 + GFF5363 0.81 +0.0 5,349,931 + GFF5363 0.82 -0.5 5,349,938 - GFF5363 0.83 -1.5 5,349,938 - GFF5363 0.83 -2.6 5,349,955 + GFF5363 0.87 +0.2 5,349,955 + GFF5363 0.87 +0.6 5,349,955 + GFF5363 0.87 -1.0 5,349,963 - GFF5363 0.89 -1.6 5,349,963 - GFF5363 0.89 +0.0 5,349,963 - GFF5363 0.89 +0.1 5,349,968 - -0.5 5,349,998 + +0.5 5,349,998 + -0.1 5,350,058 - GFF5364 0.27 -1.7 5,350,058 - GFF5364 0.27 +0.0 5,350,058 - GFF5364 0.27 -1.9 5,350,058 - GFF5364 0.27 -0.6 5,350,078 + GFF5364 0.36 +1.1 5,350,078 + GFF5364 0.36 -1.3 5,350,078 + GFF5364 0.36 -0.2 5,350,086 - GFF5364 0.40 -0.3 5,350,086 - GFF5364 0.40 -1.3 5,350,086 - GFF5364 0.40 -0.1 5,350,086 - GFF5364 0.40 -0.5 5,350,086 - GFF5364 0.40 -0.0 5,350,106 + GFF5364 0.50 -0.7 5,350,128 + GFF5364 0.60 -1.3 5,350,142 + GFF5364 0.67 +0.5 5,350,153 + GFF5364 0.72 +0.5 5,350,153 + GFF5364 0.72 -0.1 5,350,168 + GFF5364 0.80 -1.6 5,350,201 - -0.8 5,350,248 + -1.2 5,350,253 + -1.8 5,350,266 - -1.0 5,350,282 + GFF5365 0.13 -1.4 5,350,289 + GFF5365 0.14 -1.2 5,350,289 + GFF5365 0.14 -0.8 5,350,290 - GFF5365 0.14 -0.4 5,350,290 - GFF5365 0.14 -1.4 5,350,320 + GFF5365 0.21 -0.3 5,350,370 - GFF5365 0.32 +0.7 5,350,383 + GFF5365 0.35 +0.7 5,350,422 - GFF5365 0.44 +0.7 5,350,462 - GFF5365 0.53 +0.2 5,350,491 - GFF5365 0.59 +0.0 5,350,496 + GFF5365 0.60 +0.7 5,350,504 - GFF5365 0.62 -1.0 5,350,524 - GFF5365 0.67 -1.5 5,350,547 + GFF5365 0.72 -0.8 5,350,555 - GFF5365 0.74 +0.3 5,350,555 - GFF5365 0.74 -1.5 5,350,555 - GFF5365 0.74 -3.2 5,350,555 - GFF5365 0.74 +0.1 5,350,555 - GFF5365 0.74 +0.5
Or see this region's nucleotide sequence