Strain Fitness in Sphingobium sp. HT1-2 around GFF5307

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,296,944	-		GFF5305	0.57	-0.3
5,296,984	+		GFF5305	0.62	-1.2
5,297,100	+		GFF5305	0.76	-0.9
5,297,104	-		GFF5305	0.77	-1.0
5,297,114	-		GFF5305	0.78	+1.0
5,297,118	+		GFF5305	0.79	+1.2
5,297,120	+		GFF5305	0.79	-0.3
5,297,146	-		GFF5305	0.82	-1.0
5,297,146	-		GFF5305	0.82	+0.1
5,297,173	+		GFF5305	0.86	-0.5
5,297,174	-		GFF5305	0.86	+1.1
5,297,174	-		GFF5305	0.86	-2.3
5,297,176	+		GFF5305	0.86	-2.0
5,297,184	-		GFF5305	0.87	-2.8
5,297,184	-		GFF5305	0.87	+0.6
5,297,186	+		GFF5305	0.87	-1.4
5,297,192	+		GFF5305	0.88	-1.1
5,297,194	-		GFF5305	0.88	-1.3
5,297,197	+		GFF5305	0.89	-1.4
5,297,197	+		GFF5305	0.89	+0.8
5,297,197	+		GFF5305	0.89	-0.6
5,297,197	+		GFF5305	0.89	-1.0
5,297,197	+		GFF5305	0.89	+0.8
5,297,197	+		GFF5305	0.89	-2.4
5,297,197	+		GFF5305	0.89	-0.4
5,297,197	+		GFF5305	0.89	-0.0
5,297,200	-		GFF5305	0.89	-0.3
5,297,201	-		GFF5305	0.89	-1.3
5,297,205	-		GFF5305	0.90	-0.7
5,297,205	-		GFF5305	0.90	-0.1
5,297,205	-		GFF5305	0.90	-0.1
5,297,205	-		GFF5305	0.90	-1.7
5,297,205	-		GFF5305	0.90	-0.7
5,297,205	-		GFF5305	0.90	+0.4
5,297,205	-		GFF5305	0.90	-1.7
5,297,205	-		GFF5305	0.90	-0.1
5,297,205	-		GFF5305	0.90	-0.6
5,297,205	-		GFF5305	0.90	-1.1
5,297,219	+				-0.9
5,297,219	+				-0.3
5,297,219	+				-0.3
5,297,219	+				-0.8
5,297,219	+				+0.5
5,297,219	+				-0.2
5,297,219	+				-1.0
5,297,219	+				-1.2
5,297,219	+				-0.4
5,297,227	+				-1.4
5,297,227	+				-1.3
5,297,227	+				-0.1
5,297,227	+				-1.9
5,297,227	-				+1.1
5,297,227	-				+0.6
5,297,227	-				-0.6
5,297,227	-				-1.0
5,297,227	-				-0.3
5,297,227	-				-0.4
5,297,227	-				-1.8
5,297,227	-				-1.7
5,297,227	-				+0.2
5,297,227	-				+0.5
5,297,227	-				+0.8
5,297,227	-				-0.1
5,297,227	-				-2.1
5,297,227	-				-0.9
5,297,227	-				-1.5
5,297,227	-				-0.2
5,297,227	-				-0.4
5,297,227	-				-2.4
5,297,227	-				-1.7
5,297,227	-				+0.9
5,297,227	-				-1.5
5,297,238	+				-1.0
5,297,242	+				-0.1
5,297,242	+				+0.6
5,297,246	-				-2.6
5,297,246	-				+0.6
5,297,280	-				-1.1
5,297,282	-				-2.3
5,297,285	-				-1.2
5,297,297	+				-2.4
5,297,300	-				-0.7
5,297,300	-				-1.6
5,297,300	-				-3.1
5,297,305	-				-0.1
5,297,308	+				-1.0
5,297,331	+				+0.2
5,297,331	+				-2.0
5,297,331	+				-1.5
5,297,331	+				-0.3
5,297,331	+				+0.1
5,297,331	+				+0.2
5,297,331	+				-1.7
5,297,331	+				+0.6
5,297,339	-				-0.0
5,297,339	-				-0.2
5,297,339	-				+0.0
5,297,339	-				-1.4
5,297,339	-				+0.2
5,297,341	+				-2.2
5,297,341	+				-1.2
5,297,343	-				+0.3
5,297,343	-				-0.8
5,297,344	-				+1.0
5,297,346	+				-0.5
5,297,346	+				-1.9
5,297,346	+				-0.7
5,297,346	+				-1.6
5,297,346	+				-0.5
5,297,346	+				+0.2
5,297,354	-		GFF5306	0.10	-1.3
5,297,367	+		GFF5306	0.12	-1.8
5,297,372	+		GFF5306	0.13	-0.2
5,297,377	+		GFF5306	0.14	-0.4
5,297,377	+		GFF5306	0.14	-1.6
5,297,377	+		GFF5306	0.14	-1.7
5,297,377	+		GFF5306	0.14	+1.2
5,297,377	+		GFF5306	0.14	-2.0
5,297,377	+		GFF5306	0.14	-2.1
5,297,377	+		GFF5306	0.14	-2.2
5,297,377	+		GFF5306	0.14	-0.3
5,297,377	+		GFF5306	0.14	-0.2
5,297,385	-		GFF5306	0.15	-0.5
5,297,385	-		GFF5306	0.15	-0.8
5,297,385	-		GFF5306	0.15	-0.8
5,297,391	+		GFF5306	0.16	-0.5
5,297,396	+		GFF5306	0.17	-0.6
5,297,396	+		GFF5306	0.17	-1.1
5,297,396	+		GFF5306	0.17	-0.4
5,297,401	+		GFF5306	0.18	+0.9
5,297,401	+		GFF5306	0.18	-2.7
5,297,401	+		GFF5306	0.18	-0.4
5,297,404	-		GFF5306	0.18	-0.4
5,297,408	+		GFF5306	0.19	-0.1
5,297,409	-		GFF5306	0.19	-2.9
5,297,409	-		GFF5306	0.19	-0.6
5,297,409	-		GFF5306	0.19	-2.5
5,297,409	-		GFF5306	0.19	-0.5
5,297,409	-		GFF5306	0.19	+0.2
5,297,409	-		GFF5306	0.19	-0.4
5,297,409	-		GFF5306	0.19	-1.4
5,297,416	-		GFF5306	0.20	-0.1
5,297,435	+		GFF5306	0.23	-0.0
5,297,435	+		GFF5306	0.23	-0.4
5,297,435	+		GFF5306	0.23	-0.2
5,297,437	+		GFF5306	0.23	-0.5
5,297,437	+		GFF5306	0.23	-1.5
5,297,443	-		GFF5306	0.24	-1.0
5,297,445	-		GFF5306	0.24	-2.0
5,297,445	-		GFF5306	0.24	-0.8
5,297,445	-		GFF5306	0.24	+0.5
5,297,450	-		GFF5306	0.25	-0.5
5,297,457	-		GFF5306	0.26	-2.2
5,297,489	-		GFF5306	0.31	-1.6
5,297,493	-		GFF5306	0.32	+0.6
5,297,496	-		GFF5306	0.32	+0.2
5,297,496	-		GFF5306	0.32	-0.3
5,297,503	-		GFF5306	0.33	-1.1
5,297,507	+		GFF5306	0.34	+0.2
5,297,528	+		GFF5306	0.37	-1.2
5,297,530	+		GFF5306	0.37	-2.1
5,297,534	-		GFF5306	0.38	-0.2
5,297,534	-		GFF5306	0.38	-0.9
5,297,536	-		GFF5306	0.38	-1.2
5,297,554	-		GFF5306	0.41	-2.5
5,297,582	+		GFF5306	0.45	-2.0
5,297,582	+		GFF5306	0.45	+0.5
5,297,585	-		GFF5306	0.45	-2.4
5,297,590	-		GFF5306	0.46	-2.1
5,297,590	-		GFF5306	0.46	+0.2
5,297,598	-		GFF5306	0.47	-1.2
5,297,613	-		GFF5306	0.50	-0.4
5,297,614	+		GFF5306	0.50	-0.8
5,297,621	+		GFF5306	0.51	-0.1
5,297,632	+		GFF5306	0.53	-1.4
5,297,634	-		GFF5306	0.53	-0.3
5,297,638	+		GFF5306	0.53	-2.8
5,297,640	-		GFF5306	0.54	-0.5
5,297,651	+		GFF5306	0.55	-1.3
5,297,661	-		GFF5306	0.57	+0.0
5,297,709	+		GFF5306	0.64	-0.4
5,297,738	+		GFF5306	0.69	-1.8
5,297,749	+		GFF5306	0.70	+0.0
5,297,755	-		GFF5306	0.71	-0.8
5,297,813	-		GFF5306	0.80	+0.2
5,297,831	-		GFF5306	0.83	-0.2
5,297,847	+		GFF5306	0.85	+0.3
5,297,855	-		GFF5306	0.86	-0.4
5,297,862	+		GFF5306	0.87	+0.7
5,297,945	+				-0.8
5,297,945	-				-0.8
5,297,945	-				-1.6
5,297,956	+				+0.2
5,297,971	+				-0.3
5,297,982	+				-0.5
5,297,987	+				-0.4
5,297,988	+				-2.4
5,298,017	-				-0.3
5,298,024	+				+0.6
5,298,031	+				-1.2
5,298,032	-				-1.3
5,298,032	-				-0.4
5,298,041	+				-0.4
5,298,046	+				+0.0
5,298,049	-				-1.2
5,298,049	-				-1.3
5,298,086	-		GFF5307	0.11	-1.4
5,298,104	-		GFF5307	0.12	-1.3
5,298,132	-		GFF5307	0.15	-1.1
5,298,153	-		GFF5307	0.16	+0.1
5,298,160	+		GFF5307	0.17	+0.2
5,298,164	+		GFF5307	0.17	+0.2
5,298,219	-		GFF5307	0.21	+0.1
5,298,240	+		GFF5307	0.23	-0.8
5,298,245	+		GFF5307	0.23	-1.0
5,298,253	-		GFF5307	0.24	-2.6
5,298,272	+		GFF5307	0.25	-0.4
5,298,272	+		GFF5307	0.25	+0.5
5,298,272	+		GFF5307	0.25	-1.0
5,298,280	-		GFF5307	0.26	-1.4
5,298,280	-		GFF5307	0.26	-0.1
5,298,280	-		GFF5307	0.26	+0.8
5,298,280	-		GFF5307	0.26	-1.9
5,298,296	+		GFF5307	0.27	-3.0
5,298,329	-		GFF5307	0.30	-2.0
5,298,365	+		GFF5307	0.32	-1.0
5,298,393	+		GFF5307	0.35	-0.1
5,298,396	-		GFF5307	0.35	-1.1
5,298,425	+		GFF5307	0.37	-1.6
5,298,451	+		GFF5307	0.39	-0.1
5,298,454	-		GFF5307	0.39	-0.1
5,298,455	-		GFF5307	0.39	-1.2
5,298,468	+		GFF5307	0.40	-0.7
5,298,474	+		GFF5307	0.41	-0.7
5,298,479	+		GFF5307	0.41	-0.7
5,298,479	+		GFF5307	0.41	-0.9
5,298,482	-		GFF5307	0.41	+0.3
5,298,487	-		GFF5307	0.42	-0.6
5,298,491	+		GFF5307	0.42	+1.1
5,298,494	+		GFF5307	0.42	-0.4
5,298,494	+		GFF5307	0.42	-2.0
5,298,501	+		GFF5307	0.43	-0.2
5,298,507	+		GFF5307	0.43	-2.0
5,298,509	-		GFF5307	0.44	+0.1
5,298,515	-		GFF5307	0.44	-0.7
5,298,515	-		GFF5307	0.44	-1.1
5,298,526	+		GFF5307	0.45	-0.2
5,298,527	-		GFF5307	0.45	-0.8
5,298,596	+		GFF5307	0.50	-1.6
5,298,596	+		GFF5307	0.50	-0.8
5,298,596	+		GFF5307	0.50	-2.5
5,298,597	-		GFF5307	0.50	+0.6
5,298,604	-		GFF5307	0.51	-0.8
5,298,604	-		GFF5307	0.51	-1.5
5,298,604	-		GFF5307	0.51	-1.0
5,298,604	-		GFF5307	0.51	-0.4
5,298,606	+		GFF5307	0.51	-2.5
5,298,606	+		GFF5307	0.51	-0.2
5,298,606	+		GFF5307	0.51	+0.4
5,298,612	+		GFF5307	0.51	-1.0
5,298,612	+		GFF5307	0.51	-1.2
5,298,612	+		GFF5307	0.51	-0.6
5,298,614	-		GFF5307	0.52	+0.8
5,298,614	-		GFF5307	0.52	-0.6
5,298,637	-		GFF5307	0.53	-0.1
5,298,638	+		GFF5307	0.53	-1.4
5,298,646	-		GFF5307	0.54	-3.3
5,298,677	+		GFF5307	0.56	-0.1
5,298,685	-		GFF5307	0.57	+0.5
5,298,692	-		GFF5307	0.58	+1.3
5,298,747	+		GFF5307	0.62	+1.3
5,298,768	-		GFF5307	0.63	+0.0
5,298,794	+		GFF5307	0.65	+0.3
5,298,827	-		GFF5307	0.68	-1.7
5,298,841	+		GFF5307	0.69	-0.6
5,298,850	-		GFF5307	0.70	-1.0
5,298,851	-		GFF5307	0.70	-1.3
5,298,865	+		GFF5307	0.71	+0.0
5,298,897	+		GFF5307	0.73	-1.9
5,298,897	+		GFF5307	0.73	-3.1
5,298,897	+		GFF5307	0.73	+0.7
5,298,897	+		GFF5307	0.73	-0.2
5,298,897	+		GFF5307	0.73	-1.6
5,298,897	+		GFF5307	0.73	-1.3
5,298,898	+		GFF5307	0.73	-0.5
5,298,900	-		GFF5307	0.73	-0.2
5,298,900	-		GFF5307	0.73	-0.6
5,298,900	-		GFF5307	0.73	-1.1
5,298,902	+		GFF5307	0.74	-0.2
5,298,905	+		GFF5307	0.74	+1.0
5,298,905	-		GFF5307	0.74	-0.8
5,298,905	-		GFF5307	0.74	-0.2
5,298,905	-		GFF5307	0.74	-0.8
5,298,905	-		GFF5307	0.74	-0.9
5,298,905	-		GFF5307	0.74	-1.2
5,298,905	-		GFF5307	0.74	-1.3
5,298,905	-		GFF5307	0.74	+0.3
5,298,905	-		GFF5307	0.74	-1.6
5,298,905	-		GFF5307	0.74	+0.1
5,298,905	-		GFF5307	0.74	+0.2
5,298,905	-		GFF5307	0.74	+0.6
5,298,906	-		GFF5307	0.74	-2.1
5,298,907	+		GFF5307	0.74	+0.6
5,298,907	+		GFF5307	0.74	+0.5
5,298,907	+		GFF5307	0.74	-1.5
5,298,907	+		GFF5307	0.74	-0.5
5,298,935	+		GFF5307	0.76	-0.2
5,298,963	+		GFF5307	0.78	-1.1
5,298,981	-		GFF5307	0.80	-0.6
5,299,000	-		GFF5307	0.81	+0.0
5,299,005	-		GFF5307	0.82	-2.2
5,299,005	-		GFF5307	0.82	+0.3
5,299,005	-		GFF5307	0.82	-1.3
5,299,005	-		GFF5307	0.82	-0.1
5,299,014	+		GFF5307	0.82	-2.4
5,299,014	+		GFF5307	0.82	-1.0
5,299,014	+		GFF5307	0.82	-0.6
5,299,014	+		GFF5307	0.82	+1.3
5,299,014	+		GFF5307	0.82	-0.9
5,299,014	+		GFF5307	0.82	-2.7
5,299,014	+		GFF5307	0.82	-0.7
5,299,014	+		GFF5307	0.82	-0.1
5,299,020	-		GFF5307	0.83	+0.3
5,299,022	-		GFF5307	0.83	-0.5
5,299,022	-		GFF5307	0.83	-0.1
5,299,022	-		GFF5307	0.83	-2.4
5,299,022	-		GFF5307	0.83	-2.4
5,299,022	-		GFF5307	0.83	+0.0
5,299,022	-		GFF5307	0.83	-0.3
5,299,065	+		GFF5307	0.86	-0.5
5,299,068	-		GFF5307	0.86	-0.7
5,299,072	+		GFF5307	0.87	-2.4
5,299,073	-		GFF5307	0.87	-0.3
5,299,073	-		GFF5307	0.87	+0.4
5,299,073	-		GFF5307	0.87	-2.1
5,299,075	-		GFF5307	0.87	-0.0
5,299,077	+		GFF5307	0.87	+0.5
5,299,077	+		GFF5307	0.87	-1.0
5,299,077	+		GFF5307	0.87	-0.0
5,299,077	+		GFF5307	0.87	-0.5
5,299,080	-		GFF5307	0.87	-0.8
5,299,085	-		GFF5307	0.88	+0.0
5,299,085	-		GFF5307	0.88	-0.4
5,299,085	-		GFF5307	0.88	-1.2
5,299,110	-		GFF5307	0.90	-1.5
5,299,121	+				-1.0
5,299,121	+				-0.6
5,299,121	+				-0.8
5,299,121	+				-1.4
5,299,129	-				+0.1
5,299,129	-				+0.8
5,299,129	-				+0.1
5,299,129	-				-0.9
5,299,129	-				-0.8
5,299,131	+				-0.3
5,299,131	+				+0.0
5,299,131	+				-2.3
5,299,131	+				-1.8
5,299,131	+				-1.4
5,299,131	+				+0.3
5,299,131	+				-1.4
5,299,131	+				+0.5
5,299,139	-				+0.1
5,299,139	-				-1.7
5,299,139	-				+1.6
5,299,139	-				-2.4
5,299,139	-				+0.1
5,299,139	-				-0.2
5,299,192	+				-1.9
5,299,192	+				-0.9
5,299,192	+				-2.1
5,299,192	+				-0.9
5,299,192	+				-0.0
5,299,192	+				-0.8
5,299,192	+				-1.8
5,299,192	-				-0.4
5,299,200	-				-2.4
5,299,200	-				-1.2
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