Strain Fitness in Sphingobium sp. HT1-2 around GFF5123

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,113,634	+		GFF5122	0.23	+0.8
5,113,650	+		GFF5122	0.24	+0.3
5,113,651	-		GFF5122	0.24	-1.2
5,113,663	+		GFF5122	0.25	+0.1
5,113,664	-		GFF5122	0.25	+0.3
5,113,673	+		GFF5122	0.26	+0.1
5,113,686	-		GFF5122	0.27	-0.4
5,113,691	-		GFF5122	0.27	+1.4
5,113,691	-		GFF5122	0.27	-0.9
5,113,695	+		GFF5122	0.28	-0.3
5,113,696	-		GFF5122	0.28	+1.3
5,113,696	-		GFF5122	0.28	+0.0
5,113,703	-		GFF5122	0.28	+0.6
5,113,721	+		GFF5122	0.30	+0.1
5,113,721	+		GFF5122	0.30	+0.5
5,113,737	+		GFF5122	0.31	+0.1
5,113,746	-		GFF5122	0.32	+0.5
5,113,755	+		GFF5122	0.32	+0.9
5,113,757	+		GFF5122	0.33	-1.2
5,113,757	+		GFF5122	0.33	-0.4
5,113,757	+		GFF5122	0.33	+0.9
5,113,757	+		GFF5122	0.33	-0.5
5,113,762	+		GFF5122	0.33	+1.4
5,113,763	-		GFF5122	0.33	+0.5
5,113,765	-		GFF5122	0.33	-0.9
5,113,765	-		GFF5122	0.33	-0.2
5,113,765	-		GFF5122	0.33	+0.6
5,113,765	-		GFF5122	0.33	-2.0
5,113,792	-		GFF5122	0.35	-1.0
5,113,809	-		GFF5122	0.37	+0.4
5,113,809	-		GFF5122	0.37	+0.4
5,113,824	-		GFF5122	0.38	-0.1
5,113,824	-		GFF5122	0.38	-1.0
5,113,828	+		GFF5122	0.38	-0.4
5,113,860	-		GFF5122	0.41	-0.3
5,113,881	-		GFF5122	0.42	+0.3
5,113,892	+		GFF5122	0.43	-1.0
5,113,897	+		GFF5122	0.43	+1.3
5,113,900	-		GFF5122	0.44	-0.5
5,113,900	-		GFF5122	0.44	-0.7
5,113,918	+		GFF5122	0.45	-0.3
5,113,926	-		GFF5122	0.46	-1.1
5,113,939	+		GFF5122	0.47	+0.2
5,113,939	+		GFF5122	0.47	-0.3
5,113,947	-		GFF5122	0.47	+0.0
5,113,947	-		GFF5122	0.47	+1.5
5,113,947	-		GFF5122	0.47	+0.4
5,113,947	-		GFF5122	0.47	+0.3
5,114,003	-		GFF5122	0.52	-1.4
5,114,009	-		GFF5122	0.52	-1.7
5,114,009	-		GFF5122	0.52	-1.1
5,114,024	-		GFF5122	0.53	-2.4
5,114,034	-		GFF5122	0.54	+0.9
5,114,053	+		GFF5122	0.56	-1.3
5,114,083	+		GFF5122	0.58	-0.1
5,114,091	-		GFF5122	0.59	-0.7
5,114,091	-		GFF5122	0.59	-0.2
5,114,091	-		GFF5122	0.59	+0.8
5,114,099	+		GFF5122	0.59	+0.3
5,114,114	-		GFF5122	0.60	-0.1
5,114,116	+		GFF5122	0.60	-0.8
5,114,129	-		GFF5122	0.61	-0.2
5,114,143	+		GFF5122	0.63	-0.7
5,114,186	+		GFF5122	0.66	-0.6
5,114,187	+		GFF5122	0.66	-2.4
5,114,194	+		GFF5122	0.67	-1.6
5,114,194	-		GFF5122	0.67	-1.7
5,114,202	-		GFF5122	0.67	-0.1
5,114,202	-		GFF5122	0.67	-0.5
5,114,202	-		GFF5122	0.67	+0.7
5,114,213	+		GFF5122	0.68	-1.4
5,114,221	-		GFF5122	0.69	+1.3
5,114,223	+		GFF5122	0.69	+1.0
5,114,226	+		GFF5122	0.69	-0.3
5,114,234	-		GFF5122	0.70	-0.2
5,114,258	+		GFF5122	0.71	-0.7
5,114,258	-		GFF5122	0.71	-0.5
5,114,266	-		GFF5122	0.72	-1.4
5,114,266	-		GFF5122	0.72	-1.2
5,114,271	-		GFF5122	0.72	+0.9
5,114,281	-		GFF5122	0.73	+0.3
5,114,281	-		GFF5122	0.73	+0.3
5,114,291	+		GFF5122	0.74	+1.2
5,114,291	+		GFF5122	0.74	-0.7
5,114,291	+		GFF5122	0.74	+0.1
5,114,299	-		GFF5122	0.75	+0.2
5,114,299	-		GFF5122	0.75	-0.3
5,114,299	-		GFF5122	0.75	+0.5
5,114,299	-		GFF5122	0.75	+0.0
5,114,299	-		GFF5122	0.75	+0.4
5,114,299	-		GFF5122	0.75	-0.1
5,114,351	-		GFF5122	0.79	-0.8
5,114,372	+		GFF5122	0.80	-0.9
5,114,380	-		GFF5122	0.81	+0.2
5,114,395	+		GFF5122	0.82	-1.2
5,114,395	-		GFF5122	0.82	-0.6
5,114,398	-		GFF5122	0.82	-0.8
5,114,411	+		GFF5122	0.83	+0.1
5,114,436	-		GFF5122	0.85	-0.8
5,114,451	-		GFF5122	0.86	-0.1
5,114,458	+		GFF5122	0.87	+1.7
5,114,460	+		GFF5122	0.87	-0.6
5,114,460	+		GFF5122	0.87	+0.1
5,114,460	+		GFF5122	0.87	-0.8
5,114,460	+		GFF5122	0.87	+0.2
5,114,464	+		GFF5122	0.87	-0.0
5,114,466	-		GFF5122	0.88	-0.4
5,114,468	-		GFF5122	0.88	-2.8
5,114,472	-		GFF5122	0.88	-0.8
5,114,472	-		GFF5122	0.88	+0.3
5,114,505	+				-1.8
5,114,513	-				+1.8
5,114,513	-				+0.1
5,114,546	-				+1.2
5,114,553	-				-0.9
5,114,553	-				-0.3
5,114,555	+				-0.0
5,114,585	+				+0.2
5,114,591	-				+0.5
5,114,596	+				+0.1
5,114,604	+				-0.7
5,114,605	+				-0.1
5,114,613	-				-0.8
5,114,617	-				-1.7
5,114,650	-				-0.8
5,114,655	+				-0.4
5,114,663	-				-0.2
5,114,702	+				-0.8
5,114,710	-				+0.4
5,114,710	-				+0.7
5,114,724	+				-0.0
5,114,732	-				+0.3
5,114,733	-				-1.7
5,114,735	+				-1.1
5,114,740	+				-0.2
5,114,742	-				+0.1
5,114,745	+				+0.1
5,114,773	+				+0.4
5,114,792	-				+0.3
5,114,854	-		GFF5123	0.10	+0.2
5,114,872	+		GFF5123	0.11	-0.5
5,114,893	-		GFF5123	0.12	+0.2
5,114,919	+		GFF5123	0.13	-1.2
5,114,919	+		GFF5123	0.13	+1.2
5,114,919	+		GFF5123	0.13	-0.5
5,114,919	+		GFF5123	0.13	+0.3
5,114,927	-		GFF5123	0.14	-1.2
5,114,927	-		GFF5123	0.14	+0.7
5,114,927	-		GFF5123	0.14	-0.8
5,114,927	-		GFF5123	0.14	+0.4
5,114,934	-		GFF5123	0.14	+0.1
5,114,936	+		GFF5123	0.14	-0.3
5,114,944	-		GFF5123	0.14	+0.8
5,114,986	+		GFF5123	0.16	+1.5
5,114,986	+		GFF5123	0.16	+0.2
5,114,986	+		GFF5123	0.16	+0.2
5,114,986	+		GFF5123	0.16	-0.7
5,114,986	+		GFF5123	0.16	-1.1
5,114,986	+		GFF5123	0.16	+0.3
5,114,994	-		GFF5123	0.17	-0.4
5,114,994	-		GFF5123	0.17	+0.5
5,114,994	-		GFF5123	0.17	-1.5
5,114,994	-		GFF5123	0.17	-0.1
5,114,994	-		GFF5123	0.17	+0.3
5,114,994	-		GFF5123	0.17	+0.2
5,115,006	-		GFF5123	0.17	-0.2
5,115,021	+		GFF5123	0.18	-1.2
5,115,021	-		GFF5123	0.18	+0.5
5,115,055	+		GFF5123	0.19	-0.3
5,115,099	-		GFF5123	0.21	+1.0
5,115,112	-		GFF5123	0.22	-0.1
5,115,115	+		GFF5123	0.22	-0.8
5,115,115	+		GFF5123	0.22	+0.9
5,115,146	+		GFF5123	0.23	-1.9
5,115,154	-		GFF5123	0.24	+0.5
5,115,154	-		GFF5123	0.24	-0.5
5,115,184	+		GFF5123	0.25	+0.5
5,115,184	+		GFF5123	0.25	-1.1
5,115,198	-		GFF5123	0.26	-0.2
5,115,204	-		GFF5123	0.26	-1.5
5,115,209	+		GFF5123	0.26	-0.9
5,115,246	-		GFF5123	0.28	-1.8
5,115,246	-		GFF5123	0.28	-0.4
5,115,252	-		GFF5123	0.28	+1.0
5,115,266	+		GFF5123	0.29	-1.9
5,115,266	+		GFF5123	0.29	+0.1
5,115,321	+		GFF5123	0.31	-0.6
5,115,321	+		GFF5123	0.31	+0.8
5,115,321	+		GFF5123	0.31	-0.3
5,115,329	-		GFF5123	0.32	-0.3
5,115,329	-		GFF5123	0.32	+0.0
5,115,329	-		GFF5123	0.32	-1.9
5,115,329	-		GFF5123	0.32	-0.4
5,115,333	+		GFF5123	0.32	+0.3
5,115,341	-		GFF5123	0.32	+0.4
5,115,341	-		GFF5123	0.32	-0.7
5,115,349	-		GFF5123	0.32	+0.3
5,115,376	-		GFF5123	0.34	-0.2
5,115,395	+		GFF5123	0.34	-0.6
5,115,395	+		GFF5123	0.34	-1.6
5,115,403	-		GFF5123	0.35	-0.1
5,115,417	+		GFF5123	0.35	-0.4
5,115,417	+		GFF5123	0.35	-1.8
5,115,417	+		GFF5123	0.35	-1.6
5,115,417	+		GFF5123	0.35	-2.0
5,115,420	-		GFF5123	0.36	+0.1
5,115,425	-		GFF5123	0.36	+0.6
5,115,425	-		GFF5123	0.36	-2.3
5,115,425	-		GFF5123	0.36	-0.1
5,115,431	-		GFF5123	0.36	-0.8
5,115,480	+		GFF5123	0.38	-0.8
5,115,495	-		GFF5123	0.39	+1.8
5,115,510	-		GFF5123	0.40	+0.6
5,115,553	-		GFF5123	0.42	-0.5
5,115,553	-		GFF5123	0.42	-0.9
5,115,568	+		GFF5123	0.42	-0.1
5,115,647	+		GFF5123	0.46	-1.8
5,115,647	+		GFF5123	0.46	-0.8
5,115,655	-		GFF5123	0.46	+0.0
5,115,665	+		GFF5123	0.47	+0.7
5,115,665	+		GFF5123	0.47	-0.3
5,115,665	-		GFF5123	0.47	+0.3
5,115,667	+		GFF5123	0.47	-1.6
5,115,667	+		GFF5123	0.47	-1.2
5,115,675	-		GFF5123	0.47	-0.2
5,115,676	+		GFF5123	0.47	-0.6
5,115,680	-		GFF5123	0.47	-1.0
5,115,680	-		GFF5123	0.47	-0.8
5,115,719	-		GFF5123	0.49	-1.6
5,115,722	+		GFF5123	0.49	+0.5
5,115,737	+		GFF5123	0.50	-0.6
5,115,753	+		GFF5123	0.50	-1.0
5,115,753	+		GFF5123	0.50	-1.6
5,115,761	-		GFF5123	0.51	-0.6
5,115,767	+		GFF5123	0.51	+0.1
5,115,771	-		GFF5123	0.51	+0.4
5,115,774	+		GFF5123	0.51	+0.7
5,115,775	-		GFF5123	0.51	+0.6
5,115,782	-		GFF5123	0.52	+0.4
5,115,794	+		GFF5123	0.52	-0.9
5,115,796	+		GFF5123	0.52	-0.9
5,115,796	+		GFF5123	0.52	+0.7
5,115,804	+		GFF5123	0.53	-0.7
5,115,804	-		GFF5123	0.53	-0.2
5,115,804	-		GFF5123	0.53	-0.1
5,115,804	-		GFF5123	0.53	+0.0
5,115,804	-		GFF5123	0.53	-0.4
5,115,827	+		GFF5123	0.54	-2.1
5,115,827	+		GFF5123	0.54	-0.6
5,115,837	+		GFF5123	0.54	+1.0
5,115,844	+		GFF5123	0.55	-2.0
5,115,863	+		GFF5123	0.55	-0.0
5,115,948	+		GFF5123	0.59	-1.4
5,115,948	+		GFF5123	0.59	+0.4
5,115,961	-		GFF5123	0.60	-1.1
5,115,967	+		GFF5123	0.60	+0.3
5,115,967	+		GFF5123	0.60	+0.3
5,115,978	+		GFF5123	0.60	-1.0
5,116,006	+		GFF5123	0.62	+1.2
5,116,006	+		GFF5123	0.62	+0.0
5,116,006	+		GFF5123	0.62	+0.7
5,116,008	+		GFF5123	0.62	+1.4
5,116,009	-		GFF5123	0.62	-0.9
5,116,014	-		GFF5123	0.62	-0.5
5,116,014	-		GFF5123	0.62	+1.3
5,116,014	-		GFF5123	0.62	+0.2
5,116,018	+		GFF5123	0.62	-0.1
5,116,018	+		GFF5123	0.62	-0.2
5,116,018	+		GFF5123	0.62	-1.6
5,116,018	+		GFF5123	0.62	+0.4
5,116,018	+		GFF5123	0.62	-0.3
5,116,018	+		GFF5123	0.62	+0.8
5,116,026	-		GFF5123	0.63	-1.4
5,116,026	-		GFF5123	0.63	+0.9
5,116,045	-		GFF5123	0.63	+0.7
5,116,047	+		GFF5123	0.64	-0.5
5,116,051	+		GFF5123	0.64	-0.5
5,116,051	+		GFF5123	0.64	-1.0
5,116,059	-		GFF5123	0.64	+0.5
5,116,075	+		GFF5123	0.65	+0.3
5,116,084	+		GFF5123	0.65	-0.3
5,116,084	+		GFF5123	0.65	-0.6
5,116,085	-		GFF5123	0.65	-0.2
5,116,087	-		GFF5123	0.65	+0.7
5,116,089	+		GFF5123	0.65	+0.7
5,116,089	+		GFF5123	0.65	+0.7
5,116,089	+		GFF5123	0.65	-2.4
5,116,089	+		GFF5123	0.65	+0.7
5,116,092	-		GFF5123	0.66	+1.2
5,116,092	-		GFF5123	0.66	+0.9
5,116,093	+		GFF5123	0.66	+0.0
5,116,093	+		GFF5123	0.66	-1.4
5,116,097	+		GFF5123	0.66	-0.5
5,116,097	-		GFF5123	0.66	-0.6
5,116,097	-		GFF5123	0.66	-1.8
5,116,097	-		GFF5123	0.66	-1.1
5,116,107	-		GFF5123	0.66	-0.9
5,116,120	+		GFF5123	0.67	+0.4
5,116,120	+		GFF5123	0.67	-1.4
5,116,120	+		GFF5123	0.67	-0.1
5,116,120	+		GFF5123	0.67	+0.7
5,116,120	-		GFF5123	0.67	+1.2
5,116,128	-		GFF5123	0.67	-1.4
5,116,128	-		GFF5123	0.67	+1.0
5,116,128	-		GFF5123	0.67	-0.9
5,116,128	-		GFF5123	0.67	-0.5
5,116,156	+		GFF5123	0.68	+1.5
5,116,156	+		GFF5123	0.68	-0.8
5,116,156	+		GFF5123	0.68	-0.3
5,116,156	+		GFF5123	0.68	-0.9
5,116,156	+		GFF5123	0.68	+1.2
5,116,156	+		GFF5123	0.68	-0.3
5,116,156	+		GFF5123	0.68	-2.5
5,116,156	+		GFF5123	0.68	-0.1
5,116,156	+		GFF5123	0.68	-1.6
5,116,156	+		GFF5123	0.68	-0.9
5,116,164	-		GFF5123	0.69	-1.1
5,116,164	-		GFF5123	0.69	+0.5
5,116,164	-		GFF5123	0.69	+0.4
5,116,164	-		GFF5123	0.69	+0.4
5,116,164	-		GFF5123	0.69	-0.8
5,116,164	-		GFF5123	0.69	-0.2
5,116,164	-		GFF5123	0.69	+0.3
5,116,164	-		GFF5123	0.69	+0.9
5,116,164	-		GFF5123	0.69	-0.8
5,116,164	-		GFF5123	0.69	+0.2
5,116,164	-		GFF5123	0.69	+0.6
5,116,164	-		GFF5123	0.69	+0.3
5,116,176	-		GFF5123	0.69	-2.1
5,116,180	-		GFF5123	0.69	+0.6
5,116,189	+		GFF5123	0.70	+0.2
5,116,195	+		GFF5123	0.70	-0.9
5,116,195	+		GFF5123	0.70	+0.0
5,116,195	+		GFF5123	0.70	+0.7
5,116,195	+		GFF5123	0.70	+0.9
5,116,197	-		GFF5123	0.70	-0.5
5,116,197	-		GFF5123	0.70	+0.2
5,116,197	-		GFF5123	0.70	-2.4
5,116,203	-		GFF5123	0.70	-0.9
5,116,203	-		GFF5123	0.70	+0.6
5,116,227	+		GFF5123	0.72	+0.1
5,116,237	+		GFF5123	0.72	-0.4
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5,116,661	+				+0.8
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5,116,674	-				+0.4
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5,116,674	-				-1.8
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5,116,746	+				+0.2
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