Strain Fitness in Sphingobium sp. HT1-2 around GFF5105

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,091,505	-		GFF5104	0.10	-1.2
5,091,507	-		GFF5104	0.11	-1.6
5,091,518	-		GFF5104	0.12	-2.3
5,091,528	-		GFF5104	0.12	-0.9
5,091,528	-		GFF5104	0.12	-1.3
5,091,529	+		GFF5104	0.13	-0.3
5,091,529	+		GFF5104	0.13	+0.5
5,091,529	+		GFF5104	0.13	-1.8
5,091,529	+		GFF5104	0.13	-0.9
5,091,529	+		GFF5104	0.13	-0.7
5,091,529	+		GFF5104	0.13	-1.0
5,091,529	+		GFF5104	0.13	-1.5
5,091,529	+		GFF5104	0.13	-0.1
5,091,529	+		GFF5104	0.13	+0.4
5,091,536	+		GFF5104	0.13	-2.4
5,091,536	+		GFF5104	0.13	+0.3
5,091,537	-		GFF5104	0.13	-1.2
5,091,537	-		GFF5104	0.13	-0.1
5,091,537	-		GFF5104	0.13	-2.4
5,091,537	-		GFF5104	0.13	+0.1
5,091,537	-		GFF5104	0.13	-1.2
5,091,537	-		GFF5104	0.13	-1.1
5,091,537	-		GFF5104	0.13	-1.0
5,091,537	-		GFF5104	0.13	+0.2
5,091,537	-		GFF5104	0.13	-0.4
5,091,537	-		GFF5104	0.13	+0.2
5,091,537	-		GFF5104	0.13	-2.6
5,091,544	-		GFF5104	0.14	-0.1
5,091,544	-		GFF5104	0.14	-0.4
5,091,544	-		GFF5104	0.14	-1.9
5,091,544	-		GFF5104	0.14	-1.0
5,091,552	-		GFF5104	0.15	-0.6
5,091,558	+		GFF5104	0.15	-0.4
5,091,566	-		GFF5104	0.16	-0.3
5,091,566	-		GFF5104	0.16	-2.3
5,091,566	-		GFF5104	0.16	-1.9
5,091,573	-		GFF5104	0.16	-2.2
5,091,578	-		GFF5104	0.17	-0.7
5,091,607	+		GFF5104	0.19	-1.6
5,091,607	+		GFF5104	0.19	+0.6
5,091,607	+		GFF5104	0.19	+0.4
5,091,619	-		GFF5104	0.21	-2.0
5,091,634	-		GFF5104	0.22	+0.1
5,091,637	+		GFF5104	0.22	-1.7
5,091,645	-		GFF5104	0.23	-1.0
5,091,652	-		GFF5104	0.24	-2.2
5,091,656	+		GFF5104	0.24	-0.3
5,091,656	+		GFF5104	0.24	-1.1
5,091,675	+		GFF5104	0.26	+0.1
5,091,680	+		GFF5104	0.26	-0.8
5,091,680	+		GFF5104	0.26	-2.0
5,091,681	-		GFF5104	0.26	-2.1
5,091,682	+		GFF5104	0.26	-0.1
5,091,682	+		GFF5104	0.26	-1.7
5,091,688	-		GFF5104	0.27	-0.4
5,091,688	-		GFF5104	0.27	-1.2
5,091,688	-		GFF5104	0.27	-0.5
5,091,688	-		GFF5104	0.27	+0.2
5,091,688	-		GFF5104	0.27	-1.0
5,091,690	-		GFF5104	0.27	-0.1
5,091,757	+		GFF5104	0.33	-1.7
5,091,761	-		GFF5104	0.33	-1.2
5,091,761	-		GFF5104	0.33	-0.2
5,091,761	-		GFF5104	0.33	-2.2
5,091,764	+		GFF5104	0.34	-0.4
5,091,770	-		GFF5104	0.34	-2.7
5,091,818	+		GFF5104	0.38	+0.7
5,091,818	+		GFF5104	0.38	-0.7
5,091,834	+		GFF5104	0.40	-1.9
5,091,842	-		GFF5104	0.40	-0.4
5,091,844	-		GFF5104	0.41	-0.8
5,091,847	+		GFF5104	0.41	-2.6
5,091,855	+		GFF5104	0.42	-1.7
5,091,855	+		GFF5104	0.42	-2.4
5,091,863	-		GFF5104	0.42	-0.2
5,091,865	-		GFF5104	0.43	+0.3
5,091,865	-		GFF5104	0.43	-0.5
5,091,906	+		GFF5104	0.46	-0.5
5,091,914	-		GFF5104	0.47	-1.2
5,091,929	+		GFF5104	0.48	+0.0
5,091,932	-		GFF5104	0.49	-1.6
5,091,937	-		GFF5104	0.49	-0.3
5,091,972	+		GFF5104	0.52	-2.0
5,091,979	-		GFF5104	0.53	+0.5
5,091,979	-		GFF5104	0.53	-0.9
5,091,979	-		GFF5104	0.53	-0.9
5,091,980	-		GFF5104	0.53	+0.4
5,092,019	-		GFF5104	0.56	+0.2
5,092,020	+		GFF5104	0.56	+0.2
5,092,049	-		GFF5104	0.59	+0.1
5,092,068	-		GFF5104	0.61	+0.4
5,092,068	-		GFF5104	0.61	-0.8
5,092,082	+		GFF5104	0.62	+0.6
5,092,098	+		GFF5104	0.63	+0.7
5,092,098	+		GFF5104	0.63	-1.9
5,092,110	-		GFF5104	0.64	+0.4
5,092,110	-		GFF5104	0.64	-0.5
5,092,144	-		GFF5104	0.67	-1.4
5,092,155	-		GFF5104	0.68	+0.1
5,092,167	-		GFF5104	0.70	-0.4
5,092,216	-		GFF5104	0.74	-0.3
5,092,216	-		GFF5104	0.74	-2.2
5,092,226	+		GFF5104	0.75	-2.3
5,092,227	+		GFF5104	0.75	-0.2
5,092,227	+		GFF5104	0.75	-1.2
5,092,227	+		GFF5104	0.75	-0.7
5,092,227	+		GFF5104	0.75	-1.6
5,092,227	+		GFF5104	0.75	-1.8
5,092,227	+		GFF5104	0.75	-1.6
5,092,227	+		GFF5104	0.75	-0.5
5,092,227	+		GFF5104	0.75	-0.8
5,092,227	+		GFF5104	0.75	-1.3
5,092,227	+		GFF5104	0.75	-0.3
5,092,227	+		GFF5104	0.75	-0.2
5,092,227	+		GFF5104	0.75	-0.9
5,092,227	+		GFF5104	0.75	-0.6
5,092,227	+		GFF5104	0.75	-1.7
5,092,235	-		GFF5104	0.76	+0.8
5,092,235	-		GFF5104	0.76	-1.2
5,092,235	-		GFF5104	0.76	-0.2
5,092,235	-		GFF5104	0.76	-1.2
5,092,235	-		GFF5104	0.76	-0.3
5,092,235	-		GFF5104	0.76	-0.9
5,092,235	-		GFF5104	0.76	-0.9
5,092,235	-		GFF5104	0.76	-0.4
5,092,235	-		GFF5104	0.76	-3.2
5,092,238	+		GFF5104	0.76	-0.8
5,092,283	-		GFF5104	0.80	-1.0
5,092,315	+		GFF5104	0.83	-1.0
5,092,317	-		GFF5104	0.83	-0.6
5,092,331	-		GFF5104	0.84	-1.7
5,092,331	-		GFF5104	0.84	+0.4
5,092,353	+		GFF5104	0.86	-0.4
5,092,370	+		GFF5104	0.88	-0.9
5,092,401	+				-3.2
5,092,401	+				-2.4
5,092,401	+				-1.2
5,092,409	-				-1.6
5,092,409	-				-1.0
5,092,409	-				-1.2
5,092,409	-				-0.9
5,092,409	-				+0.3
5,092,412	+				-0.4
5,092,418	-				-1.8
5,092,420	-				-2.2
5,092,425	+				+0.1
5,092,426	-				-1.9
5,092,435	+				-0.0
5,092,435	+				+0.3
5,092,435	+				-0.7
5,092,440	+				-2.3
5,092,440	+				+1.2
5,092,440	+				-1.1
5,092,440	+				-2.5
5,092,443	-				-3.4
5,092,443	-				-3.0
5,092,443	-				+0.2
5,092,443	-				-0.1
5,092,443	-				-0.8
5,092,448	-				+0.4
5,092,448	-				-3.7
5,092,448	-				-0.9
5,092,448	-				-2.5
5,092,448	-				-1.0
5,092,479	+				-1.0
5,092,502	+				-1.5
5,092,502	+				-0.3
5,092,510	-				-3.3
5,092,510	-				+0.8
5,092,511	-				+0.6
5,092,511	-				-2.2
5,092,511	-				-2.5
5,092,526	-				-0.4
5,092,563	+				-0.7
5,092,579	+				+0.4
5,092,606	+				-0.7
5,092,608	+				-2.5
5,092,608	+				-1.1
5,092,613	+				-0.9
5,092,613	+				-0.1
5,092,613	+				-0.6
5,092,613	+				-0.1
5,092,613	+				+0.3
5,092,613	+				-2.3
5,092,618	+		GFF5105	0.10	-1.2
5,092,618	+		GFF5105	0.10	+0.5
5,092,621	-		GFF5105	0.10	-0.7
5,092,621	-		GFF5105	0.10	-1.1
5,092,621	-		GFF5105	0.10	-1.6
5,092,621	-		GFF5105	0.10	-1.3
5,092,621	-		GFF5105	0.10	-0.6
5,092,621	-		GFF5105	0.10	-0.7
5,092,621	-		GFF5105	0.10	-1.4
5,092,621	-		GFF5105	0.10	+0.4
5,092,621	-		GFF5105	0.10	-0.3
5,092,621	-		GFF5105	0.10	-2.6
5,092,621	-		GFF5105	0.10	-0.9
5,092,621	-		GFF5105	0.10	-0.7
5,092,626	-		GFF5105	0.11	-1.1
5,092,626	-		GFF5105	0.11	-1.2
5,092,626	-		GFF5105	0.11	+0.6
5,092,626	-		GFF5105	0.11	-0.3
5,092,631	-		GFF5105	0.11	-0.6
5,092,661	+		GFF5105	0.14	-1.2
5,092,723	+		GFF5105	0.19	-0.2
5,092,723	+		GFF5105	0.19	-0.0
5,092,723	+		GFF5105	0.19	-0.8
5,092,731	-		GFF5105	0.20	-1.0
5,092,731	-		GFF5105	0.20	-0.4
5,092,731	-		GFF5105	0.20	-0.2
5,092,739	+		GFF5105	0.21	-0.4
5,092,772	+		GFF5105	0.24	-0.6
5,092,772	+		GFF5105	0.24	-0.4
5,092,772	-		GFF5105	0.24	+0.2
5,092,787	+		GFF5105	0.25	-2.2
5,092,787	+		GFF5105	0.25	-1.6
5,092,795	-		GFF5105	0.26	-0.4
5,092,795	-		GFF5105	0.26	-0.5
5,092,795	-		GFF5105	0.26	+1.5
5,092,795	-		GFF5105	0.26	-0.1
5,092,795	-		GFF5105	0.26	-2.6
5,092,795	-		GFF5105	0.26	-1.5
5,092,820	+		GFF5105	0.28	-1.0
5,092,820	+		GFF5105	0.28	-0.2
5,092,820	+		GFF5105	0.28	-0.9
5,092,820	+		GFF5105	0.28	-0.8
5,092,820	+		GFF5105	0.28	+0.8
5,092,820	+		GFF5105	0.28	+0.3
5,092,820	+		GFF5105	0.28	-1.9
5,092,820	+		GFF5105	0.28	-1.0
5,092,820	+		GFF5105	0.28	-1.3
5,092,820	+		GFF5105	0.28	-1.9
5,092,820	+		GFF5105	0.28	-0.8
5,092,820	+		GFF5105	0.28	-0.1
5,092,820	+		GFF5105	0.28	-0.8
5,092,820	+		GFF5105	0.28	-1.8
5,092,823	-		GFF5105	0.28	+0.9
5,092,828	-		GFF5105	0.29	-0.3
5,092,828	-		GFF5105	0.29	+0.3
5,092,828	-		GFF5105	0.29	-3.3
5,092,828	-		GFF5105	0.29	+0.0
5,092,828	-		GFF5105	0.29	-0.7
5,092,828	-		GFF5105	0.29	-0.7
5,092,828	-		GFF5105	0.29	-1.9
5,092,828	-		GFF5105	0.29	-1.6
5,092,828	-		GFF5105	0.29	-0.2
5,092,828	-		GFF5105	0.29	-0.2
5,092,828	-		GFF5105	0.29	-1.4
5,092,828	-		GFF5105	0.29	-0.4
5,092,828	-		GFF5105	0.29	-0.9
5,092,828	-		GFF5105	0.29	-0.3
5,092,828	-		GFF5105	0.29	-1.1
5,092,828	-		GFF5105	0.29	-2.5
5,092,828	-		GFF5105	0.29	-0.7
5,092,828	-		GFF5105	0.29	-2.7
5,092,830	-		GFF5105	0.29	-1.9
5,092,838	-		GFF5105	0.29	+0.2
5,092,856	+		GFF5105	0.31	-0.5
5,092,861	+		GFF5105	0.31	+0.9
5,092,866	+		GFF5105	0.32	-0.5
5,092,869	-		GFF5105	0.32	-0.9
5,092,871	-		GFF5105	0.32	-1.0
5,092,887	+		GFF5105	0.34	-1.6
5,092,895	-		GFF5105	0.34	-1.6
5,092,895	-		GFF5105	0.34	-1.1
5,092,896	-		GFF5105	0.35	-2.0
5,092,896	-		GFF5105	0.35	-1.5
5,092,896	-		GFF5105	0.35	-1.5
5,092,897	-		GFF5105	0.35	-0.2
5,092,900	-		GFF5105	0.35	-0.6
5,092,901	+		GFF5105	0.35	+0.1
5,092,920	-		GFF5105	0.37	-0.2
5,092,932	+		GFF5105	0.38	-1.1
5,092,941	-		GFF5105	0.39	-0.7
5,092,942	-		GFF5105	0.39	-0.3
5,092,942	-		GFF5105	0.39	-0.4
5,092,947	-		GFF5105	0.39	+1.1
5,092,982	+		GFF5105	0.42	-0.3
5,093,043	-		GFF5105	0.48	-1.2
5,093,077	-		GFF5105	0.51	-0.8
5,093,087	+		GFF5105	0.51	-0.5
5,093,087	+		GFF5105	0.51	-1.3
5,093,097	+		GFF5105	0.52	+0.3
5,093,119	+		GFF5105	0.54	-2.2
5,093,122	-		GFF5105	0.54	-1.1
5,093,127	-		GFF5105	0.55	-2.4
5,093,161	+		GFF5105	0.58	-0.4
5,093,161	+		GFF5105	0.58	-0.8
5,093,161	+		GFF5105	0.58	-2.5
5,093,177	-		GFF5105	0.59	-2.4
5,093,187	+		GFF5105	0.60	-1.8
5,093,195	-		GFF5105	0.61	+0.2
5,093,198	+		GFF5105	0.61	-0.1
5,093,208	-		GFF5105	0.62	+1.0
5,093,232	-		GFF5105	0.64	-1.3
5,093,247	+		GFF5105	0.66	-0.8
5,093,258	-		GFF5105	0.66	-1.0
5,093,258	-		GFF5105	0.66	+0.0
5,093,275	+		GFF5105	0.68	-1.4
5,093,289	+		GFF5105	0.69	-0.8
5,093,294	+		GFF5105	0.70	+0.2
5,093,297	-		GFF5105	0.70	+0.1
5,093,302	+		GFF5105	0.70	-0.7
5,093,310	-		GFF5105	0.71	-0.1
5,093,310	-		GFF5105	0.71	+0.5
5,093,330	+		GFF5105	0.73	-0.9
5,093,330	+		GFF5105	0.73	+0.4
5,093,330	+		GFF5105	0.73	-0.9
5,093,330	+		GFF5105	0.73	-1.8
5,093,330	+		GFF5105	0.73	+0.3
5,093,330	+		GFF5105	0.73	-0.9
5,093,330	+		GFF5105	0.73	-2.1
5,093,335	+		GFF5105	0.73	-0.1
5,093,338	-		GFF5105	0.74	-1.2
5,093,338	-		GFF5105	0.74	-0.8
5,093,340	+		GFF5105	0.74	-0.6
5,093,340	+		GFF5105	0.74	-1.6
5,093,340	+		GFF5105	0.74	-0.8
5,093,348	-		GFF5105	0.74	+0.9
5,093,355	-		GFF5105	0.75	-0.7
5,093,355	-		GFF5105	0.75	-1.9
5,093,355	-		GFF5105	0.75	-0.6
5,093,355	-		GFF5105	0.75	+0.2
5,093,355	-		GFF5105	0.75	+0.2
5,093,356	-		GFF5105	0.75	-0.1
5,093,381	+		GFF5105	0.77	+0.3
5,093,389	-		GFF5105	0.78	-1.7
5,093,389	-		GFF5105	0.78	-2.2
5,093,391	+		GFF5105	0.78	-1.4
5,093,396	+		GFF5105	0.79	-0.0
5,093,404	-		GFF5105	0.79	-1.1
5,093,421	+		GFF5105	0.81	-0.3
5,093,424	-		GFF5105	0.81	-0.0
5,093,448	+		GFF5105	0.83	-2.9
5,093,456	-		GFF5105	0.84	-1.4
5,093,456	-		GFF5105	0.84	-1.1
5,093,493	-		GFF5105	0.87	-1.4
5,093,505	-		GFF5105	0.88	-1.1
5,093,513	+		GFF5105	0.89	-0.1
5,093,513	+		GFF5105	0.89	-1.1
5,093,513	+		GFF5105	0.89	-0.5
5,093,518	+		GFF5105	0.89	+0.0
5,093,518	+		GFF5105	0.89	-0.1
5,093,521	-		GFF5105	0.90	-0.3
5,093,521	-		GFF5105	0.90	-0.7
5,093,521	-		GFF5105	0.90	-0.5
5,093,521	-		GFF5105	0.90	-1.7
5,093,521	-		GFF5105	0.90	+1.0
5,093,521	-		GFF5105	0.90	-1.2
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5,093,523	+		GFF5105	0.90	-0.4
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5,093,559	+				-1.1
5,093,559	+				-1.1
5,093,566	+				-0.2
5,093,566	-				-1.5
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5,093,567	-				-0.4
5,093,567	-				+0.0
5,093,567	-				+0.2
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5,093,590	+				-0.7
5,093,595	+				-0.4
5,093,604	-				-0.7
5,093,604	-				-0.4
5,093,611	+				-0.1
5,093,611	+				-3.4
5,093,619	-				+0.7
5,093,619	-				-0.7
5,093,619	-				-1.2
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5,093,635	+				-0.3
5,093,646	+				+0.1
5,093,652	-				-1.1
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5,093,694	-				-0.3
5,093,699	-				-1.1
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5,093,716	+				+0.2
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5,094,604	-				-2.0
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