Strain Fitness in Sphingobium sp. HT1-2 around GFF4934

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,925,064	-		GFF4933	0.55	-2.9
4,925,064	-		GFF4933	0.55	-1.1
4,925,064	-		GFF4933	0.55	-0.4
4,925,064	-		GFF4933	0.55	-1.5
4,925,066	+		GFF4933	0.55	-1.7
4,925,066	+		GFF4933	0.55	-1.6
4,925,066	+		GFF4933	0.55	-1.5
4,925,066	+		GFF4933	0.55	-0.9
4,925,066	+		GFF4933	0.55	+0.0
4,925,066	+		GFF4933	0.55	-0.7
4,925,066	+		GFF4933	0.55	-0.3
4,925,066	+		GFF4933	0.55	-1.4
4,925,066	+		GFF4933	0.55	-1.8
4,925,066	+		GFF4933	0.55	-1.5
4,925,066	+		GFF4933	0.55	-2.0
4,925,066	+		GFF4933	0.55	-1.6
4,925,066	+		GFF4933	0.55	-1.8
4,925,066	+		GFF4933	0.55	-0.1
4,925,074	-		GFF4933	0.56	-2.0
4,925,074	-		GFF4933	0.56	+0.5
4,925,074	-		GFF4933	0.56	-0.2
4,925,074	-		GFF4933	0.56	+0.6
4,925,074	-		GFF4933	0.56	-1.0
4,925,074	-		GFF4933	0.56	+0.3
4,925,074	-		GFF4933	0.56	-3.4
4,925,074	-		GFF4933	0.56	-0.6
4,925,074	-		GFF4933	0.56	-0.9
4,925,083	+		GFF4933	0.56	-1.0
4,925,091	+		GFF4933	0.56	-1.2
4,925,091	-		GFF4933	0.56	+0.0
4,925,100	+		GFF4933	0.57	-1.2
4,925,139	+		GFF4933	0.59	-2.0
4,925,144	+		GFF4933	0.59	-0.5
4,925,147	-		GFF4933	0.59	-0.4
4,925,152	-		GFF4933	0.59	+0.4
4,925,152	-		GFF4933	0.59	+0.2
4,925,171	-		GFF4933	0.60	+0.3
4,925,187	+		GFF4933	0.61	-3.1
4,925,188	-		GFF4933	0.61	-1.6
4,925,195	+		GFF4933	0.61	-0.4
4,925,195	+		GFF4933	0.61	+0.5
4,925,203	-		GFF4933	0.62	-1.1
4,925,208	-		GFF4933	0.62	-1.1
4,925,252	+		GFF4933	0.64	-0.2
4,925,255	-		GFF4933	0.64	-1.3
4,925,255	-		GFF4933	0.64	-1.9
4,925,304	+		GFF4933	0.66	-0.3
4,925,304	+		GFF4933	0.66	-0.5
4,925,304	+		GFF4933	0.66	+0.6
4,925,328	+		GFF4933	0.67	-0.6
4,925,336	-		GFF4933	0.68	-2.8
4,925,336	-		GFF4933	0.68	-0.5
4,925,339	-		GFF4933	0.68	-1.7
4,925,359	+		GFF4933	0.69	-0.4
4,925,374	+		GFF4933	0.69	-1.7
4,925,374	+		GFF4933	0.69	-1.0
4,925,374	+		GFF4933	0.69	+0.3
4,925,374	+		GFF4933	0.69	-0.4
4,925,374	+		GFF4933	0.69	-1.1
4,925,382	-		GFF4933	0.70	-0.1
4,925,382	-		GFF4933	0.70	+0.4
4,925,382	-		GFF4933	0.70	-2.1
4,925,382	-		GFF4933	0.70	-0.7
4,925,382	-		GFF4933	0.70	+0.0
4,925,382	-		GFF4933	0.70	-0.5
4,925,382	-		GFF4933	0.70	+0.4
4,925,382	-		GFF4933	0.70	-1.8
4,925,389	+		GFF4933	0.70	-2.4
4,925,389	+		GFF4933	0.70	-0.8
4,925,389	+		GFF4933	0.70	+0.2
4,925,389	+		GFF4933	0.70	-1.1
4,925,392	-		GFF4933	0.70	-0.0
4,925,397	-		GFF4933	0.70	+0.7
4,925,397	-		GFF4933	0.70	-1.5
4,925,397	-		GFF4933	0.70	-2.0
4,925,397	-		GFF4933	0.70	-1.1
4,925,402	-		GFF4933	0.71	-0.4
4,925,416	+		GFF4933	0.71	-2.5
4,925,416	+		GFF4933	0.71	-1.1
4,925,423	-		GFF4933	0.71	-0.1
4,925,424	-		GFF4933	0.72	-0.1
4,925,432	+		GFF4933	0.72	-0.7
4,925,433	+		GFF4933	0.72	-1.2
4,925,440	-		GFF4933	0.72	+0.2
4,925,440	-		GFF4933	0.72	+0.3
4,925,440	-		GFF4933	0.72	-0.5
4,925,446	-		GFF4933	0.73	-0.3
4,925,447	-		GFF4933	0.73	+0.4
4,925,452	-		GFF4933	0.73	-0.7
4,925,462	+		GFF4933	0.73	-2.2
4,925,462	+		GFF4933	0.73	-0.9
4,925,468	+		GFF4933	0.73	+0.0
4,925,492	+		GFF4933	0.75	+0.2
4,925,492	+		GFF4933	0.75	-1.4
4,925,492	+		GFF4933	0.75	-0.1
4,925,493	+		GFF4933	0.75	-0.5
4,925,493	+		GFF4933	0.75	-1.4
4,925,500	-		GFF4933	0.75	-1.8
4,925,500	-		GFF4933	0.75	-2.7
4,925,501	-		GFF4933	0.75	-1.8
4,925,501	-		GFF4933	0.75	-0.8
4,925,501	-		GFF4933	0.75	+0.1
4,925,501	-		GFF4933	0.75	+0.9
4,925,501	-		GFF4933	0.75	-1.5
4,925,508	-		GFF4933	0.75	+0.2
4,925,533	+		GFF4933	0.76	-0.3
4,925,539	-		GFF4933	0.77	-0.4
4,925,565	-		GFF4933	0.78	-0.3
4,925,599	+		GFF4933	0.79	-1.0
4,925,599	-		GFF4933	0.79	+0.2
4,925,605	+		GFF4933	0.80	+0.4
4,925,607	-		GFF4933	0.80	-0.6
4,925,607	-		GFF4933	0.80	+0.6
4,925,607	-		GFF4933	0.80	-2.3
4,925,607	-		GFF4933	0.80	-0.0
4,925,607	-		GFF4933	0.80	-2.5
4,925,668	-		GFF4933	0.83	-0.6
4,925,670	+		GFF4933	0.83	-1.6
4,925,675	+		GFF4933	0.83	-0.7
4,925,675	+		GFF4933	0.83	-1.2
4,925,675	+		GFF4933	0.83	-1.0
4,925,675	+		GFF4933	0.83	+0.6
4,925,677	+		GFF4933	0.83	-0.1
4,925,678	-		GFF4933	0.83	-1.9
4,925,678	-		GFF4933	0.83	+0.5
4,925,683	-		GFF4933	0.83	-0.8
4,925,683	-		GFF4933	0.83	+0.1
4,925,685	+		GFF4933	0.83	+0.6
4,925,685	+		GFF4933	0.83	+0.3
4,925,693	-		GFF4933	0.84	+0.3
4,925,693	-		GFF4933	0.84	-1.3
4,925,693	-		GFF4933	0.84	-1.7
4,925,698	-		GFF4933	0.84	-2.2
4,925,737	-		GFF4933	0.86	-1.2
4,925,737	-		GFF4933	0.86	-1.3
4,925,738	+		GFF4933	0.86	-1.1
4,925,741	-		GFF4933	0.86	-0.2
4,925,746	-		GFF4933	0.86	-2.5
4,925,828	-		GFF4933	0.90	-0.5
4,925,830	+		GFF4933	0.90	-1.2
4,925,854	-				+0.1
4,925,854	-				-1.1
4,925,883	-				+0.3
4,925,892	+				-0.1
4,925,912	+				-0.1
4,925,918	+				-0.4
4,925,920	-				+0.2
4,925,920	-				-2.1
4,925,925	+				+0.1
4,925,926	+				-0.7
4,925,947	-				-0.9
4,925,947	-				-0.1
4,925,966	+				-0.6
4,925,970	-				-0.7
4,925,970	-				-1.4
4,925,974	-				+0.3
4,926,005	-				+0.4
4,926,005	-				-1.8
4,926,031	-				-0.7
4,926,033	-				-1.2
4,926,043	+				-0.7
4,926,052	+				-1.6
4,926,055	-				-1.8
4,926,085	-				-1.4
4,926,092	+				-0.4
4,926,100	-				+0.4
4,926,100	-				-1.1
4,926,110	-				-0.6
4,926,110	-				-0.4
4,926,110	-				-0.6
4,926,126	+				-0.4
4,926,136	+				-0.1
4,926,141	+				+0.1
4,926,149	-		GFF4934	0.11	-0.7
4,926,172	-		GFF4934	0.13	-1.0
4,926,174	+		GFF4934	0.14	-0.1
4,926,174	+		GFF4934	0.14	-0.4
4,926,174	+		GFF4934	0.14	-0.7
4,926,174	+		GFF4934	0.14	-0.5
4,926,174	+		GFF4934	0.14	-2.3
4,926,174	+		GFF4934	0.14	+0.4
4,926,174	+		GFF4934	0.14	-0.8
4,926,174	+		GFF4934	0.14	+0.2
4,926,177	-		GFF4934	0.14	-1.0
4,926,182	-		GFF4934	0.15	-0.7
4,926,182	-		GFF4934	0.15	-0.5
4,926,182	-		GFF4934	0.15	-1.0
4,926,182	-		GFF4934	0.15	-1.1
4,926,182	-		GFF4934	0.15	-1.3
4,926,182	-		GFF4934	0.15	-1.2
4,926,182	-		GFF4934	0.15	-0.6
4,926,182	-		GFF4934	0.15	-1.1
4,926,182	-		GFF4934	0.15	-0.8
4,926,182	-		GFF4934	0.15	-1.4
4,926,184	+		GFF4934	0.15	-3.0
4,926,184	+		GFF4934	0.15	-0.9
4,926,184	+		GFF4934	0.15	-0.2
4,926,192	-		GFF4934	0.16	-0.0
4,926,192	-		GFF4934	0.16	-1.0
4,926,206	+		GFF4934	0.18	-1.2
4,926,212	+		GFF4934	0.18	+0.7
4,926,213	+		GFF4934	0.18	-0.1
4,926,214	-		GFF4934	0.19	+0.3
4,926,219	+		GFF4934	0.19	-0.1
4,926,226	-		GFF4934	0.20	-0.1
4,926,226	-		GFF4934	0.20	-1.7
4,926,228	+		GFF4934	0.20	-1.4
4,926,236	-		GFF4934	0.21	-1.3
4,926,246	+		GFF4934	0.23	+0.3
4,926,256	-		GFF4934	0.24	-0.6
4,926,265	+		GFF4934	0.25	-1.5
4,926,265	+		GFF4934	0.25	+0.1
4,926,265	+		GFF4934	0.25	+0.7
4,926,267	+		GFF4934	0.25	-0.4
4,926,273	-		GFF4934	0.26	-1.3
4,926,273	-		GFF4934	0.26	+0.2
4,926,273	-		GFF4934	0.26	-1.1
4,926,273	-		GFF4934	0.26	+0.2
4,926,275	+		GFF4934	0.26	-2.5
4,926,283	-		GFF4934	0.27	-0.8
4,926,286	+		GFF4934	0.28	-1.3
4,926,292	+		GFF4934	0.28	-0.3
4,926,294	-		GFF4934	0.29	-0.6
4,926,294	-		GFF4934	0.29	-2.0
4,926,294	-		GFF4934	0.29	-1.2
4,926,294	-		GFF4934	0.29	-0.9
4,926,303	-		GFF4934	0.30	-0.6
4,926,313	-		GFF4934	0.31	-0.1
4,926,339	+		GFF4934	0.34	-0.2
4,926,401	-		GFF4934	0.42	-1.5
4,926,436	-		GFF4934	0.46	-0.8
4,926,447	-		GFF4934	0.47	-1.3
4,926,447	-		GFF4934	0.47	-1.5
4,926,486	-		GFF4934	0.52	+0.2
4,926,491	+		GFF4934	0.53	-0.1
4,926,496	+		GFF4934	0.54	-0.1
4,926,496	+		GFF4934	0.54	-0.6
4,926,496	+		GFF4934	0.54	-1.8
4,926,504	-		GFF4934	0.55	-0.6
4,926,509	-		GFF4934	0.55	-0.6
4,926,526	+		GFF4934	0.57	-0.5
4,926,553	+		GFF4934	0.61	-0.9
4,926,554	-		GFF4934	0.61	-0.3
4,926,572	+		GFF4934	0.63	-0.6
4,926,576	+		GFF4934	0.63	+0.9
4,926,584	-		GFF4934	0.64	-1.2
4,926,615	+		GFF4934	0.68	-0.1
4,926,617	+		GFF4934	0.69	+0.0
4,926,622	+		GFF4934	0.69	-0.7
4,926,628	+		GFF4934	0.70	-0.6
4,926,636	-		GFF4934	0.71	+0.5
4,926,667	+		GFF4934	0.75	-0.5
4,926,667	+		GFF4934	0.75	-1.4
4,926,667	+		GFF4934	0.75	+0.5
4,926,670	-		GFF4934	0.75	+1.0
4,926,675	-		GFF4934	0.76	-0.7
4,926,677	+		GFF4934	0.76	-0.3
4,926,680	+		GFF4934	0.76	-1.6
4,926,688	-		GFF4934	0.77	-2.0
4,926,689	+		GFF4934	0.77	-0.1
4,926,689	+		GFF4934	0.77	-1.1
4,926,689	+		GFF4934	0.77	-1.3
4,926,693	-		GFF4934	0.78	-1.5
4,926,704	-		GFF4934	0.79	+0.8
4,926,709	+		GFF4934	0.80	+0.5
4,926,711	+		GFF4934	0.80	-1.1
4,926,711	+		GFF4934	0.80	-1.2
4,926,711	+		GFF4934	0.80	-1.7
4,926,711	+		GFF4934	0.80	-2.1
4,926,714	-		GFF4934	0.81	-1.7
4,926,719	-		GFF4934	0.81	-2.4
4,926,758	+		GFF4934	0.86	+0.3
4,926,783	-		GFF4934	0.89	-2.2
4,926,783	-		GFF4934	0.89	-0.4
4,926,794	+				-1.8
4,926,799	+				-0.4
4,926,807	+				-1.0
4,926,807	-				-0.5
4,926,812	-				-1.6
4,926,812	-				+0.8
4,926,818	+				+1.2
4,926,826	-				-0.3
4,926,826	-				-0.5
4,926,827	+				-1.4
4,926,847	-				-0.6
4,926,864	+				-0.6
4,926,866	+				-0.6
4,926,872	-				-1.5
4,926,874	+				-0.3
4,926,882	+				-0.2
4,926,890	+				-0.3
4,926,890	+				-2.1
4,926,890	+				-1.3
4,926,890	-				-1.7
4,926,895	+				-0.7
4,926,898	-				-0.0
4,926,898	-				-0.8
4,926,931	-				+0.3
4,926,931	-				-1.7
4,926,948	+				-0.2
4,926,948	+				-0.9
4,926,954	-				-0.3
4,926,974	-				-2.0
4,926,980	+				-2.2
4,926,980	+				-1.9
4,926,982	+				-1.7
4,926,988	-				-0.3
4,926,988	-				-0.6
4,926,990	-				-0.8
4,926,990	-				-0.0
4,926,997	+				-0.7
4,926,999	+				-1.8
4,927,007	-				-1.8
4,927,026	+				-3.2
4,927,056	+				-0.7
4,927,056	+				-0.7
4,927,066	-		GFF4935	0.11	-0.7
4,927,079	-		GFF4935	0.13	-1.3
4,927,087	+		GFF4935	0.14	-0.2
4,927,097	-		GFF4935	0.15	+0.1
4,927,111	+		GFF4935	0.17	-0.8
4,927,117	-		GFF4935	0.18	+0.3
4,927,124	+		GFF4935	0.19	-1.5
4,927,143	-		GFF4935	0.22	-0.7
4,927,149	+		GFF4935	0.22	-2.3
4,927,165	+		GFF4935	0.25	-1.1
4,927,165	+		GFF4935	0.25	+0.6
4,927,165	+		GFF4935	0.25	-1.4
4,927,180	+		GFF4935	0.27	-0.4
4,927,254	+		GFF4935	0.37	-0.5
4,927,255	-		GFF4935	0.37	-0.9
4,927,258	-		GFF4935	0.37	-2.4
4,927,259	+		GFF4935	0.37	-1.8
4,927,271	-		GFF4935	0.39	-0.2
4,927,288	+		GFF4935	0.41	+0.8
4,927,293	-		GFF4935	0.42	+0.8
4,927,296	-		GFF4935	0.42	-2.1
4,927,308	-		GFF4935	0.44	+0.1
4,927,309	-		GFF4935	0.44	-0.1
4,927,309	-		GFF4935	0.44	-1.8
4,927,309	-		GFF4935	0.44	-2.0
4,927,315	-		GFF4935	0.45	+0.0
4,927,327	-		GFF4935	0.47	-0.1
4,927,327	-		GFF4935	0.47	-3.0
4,927,327	-		GFF4935	0.47	-0.2
4,927,353	+		GFF4935	0.50	-1.4
4,927,382	+		GFF4935	0.54	-2.8
4,927,393	+		GFF4935	0.56	-0.6
4,927,403	+		GFF4935	0.57	-0.2
4,927,431	-		GFF4935	0.61	-0.7
4,927,438	+		GFF4935	0.62	-0.7
4,927,458	-		GFF4935	0.64	-0.7
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