Strain Fitness in Sphingobium sp. HT1-2 around GFF4902

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,891,997	-		GFF4900	0.52	-0.5
4,892,052	+		GFF4900	0.65	-1.4
4,892,057	+		GFF4900	0.67	-0.7
4,892,058	+		GFF4900	0.67	-0.8
4,892,060	-		GFF4900	0.67	-0.3
4,892,066	+		GFF4900	0.69	-2.3
4,892,074	-		GFF4900	0.71	-0.6
4,892,088	+		GFF4900	0.74	-1.3
4,892,088	+		GFF4900	0.74	-0.4
4,892,088	+		GFF4900	0.74	+0.3
4,892,088	+		GFF4900	0.74	+0.4
4,892,088	+		GFF4900	0.74	-0.6
4,892,088	+		GFF4900	0.74	-1.2
4,892,088	+		GFF4900	0.74	-0.3
4,892,088	+		GFF4900	0.74	-0.4
4,892,096	-		GFF4900	0.76	-1.1
4,892,096	-		GFF4900	0.76	-2.2
4,892,096	-		GFF4900	0.76	-1.0
4,892,096	-		GFF4900	0.76	-1.4
4,892,096	-		GFF4900	0.76	-2.1
4,892,096	-		GFF4900	0.76	-0.7
4,892,096	-		GFF4900	0.76	-0.0
4,892,096	-		GFF4900	0.76	-1.2
4,892,096	-		GFF4900	0.76	-0.9
4,892,112	+		GFF4900	0.80	-1.0
4,892,116	+		GFF4900	0.81	+1.4
4,892,119	+		GFF4900	0.81	+0.2
4,892,124	+		GFF4900	0.83	-0.6
4,892,124	+		GFF4900	0.83	-1.2
4,892,134	+		GFF4900	0.85	-0.4
4,892,134	+		GFF4900	0.85	-1.0
4,892,134	+		GFF4900	0.85	-1.3
4,892,134	+		GFF4900	0.85	-1.7
4,892,136	+		GFF4900	0.85	-0.3
4,892,154	+		GFF4900	0.90	+0.2
4,892,202	+				-1.7
4,892,210	-				+0.2
4,892,210	-				+0.0
4,892,215	+				-0.0
4,892,226	+				+0.1
4,892,271	-				-1.4
4,892,276	+		GFF4901	0.10	-0.1
4,892,276	-		GFF4901	0.10	-1.0
4,892,276	-		GFF4901	0.10	-1.5
4,892,276	-		GFF4901	0.10	-0.5
4,892,276	-		GFF4901	0.10	-0.2
4,892,284	-		GFF4901	0.11	-0.9
4,892,293	+		GFF4901	0.13	-1.3
4,892,302	+		GFF4901	0.14	-0.7
4,892,309	+		GFF4901	0.15	-0.5
4,892,310	-		GFF4901	0.15	-1.0
4,892,310	-		GFF4901	0.15	-1.1
4,892,312	-		GFF4901	0.15	-0.9
4,892,317	-		GFF4901	0.16	+1.1
4,892,317	-		GFF4901	0.16	-2.0
4,892,328	-		GFF4901	0.17	-1.4
4,892,339	+		GFF4901	0.19	-0.2
4,892,339	+		GFF4901	0.19	-1.0
4,892,339	+		GFF4901	0.19	-1.6
4,892,339	+		GFF4901	0.19	-0.7
4,892,339	+		GFF4901	0.19	-1.2
4,892,339	+		GFF4901	0.19	-1.5
4,892,341	+		GFF4901	0.19	-1.8
4,892,347	-		GFF4901	0.20	+0.7
4,892,347	-		GFF4901	0.20	-0.3
4,892,347	-		GFF4901	0.20	+0.2
4,892,347	-		GFF4901	0.20	+0.3
4,892,347	-		GFF4901	0.20	+0.2
4,892,347	-		GFF4901	0.20	-1.2
4,892,347	-		GFF4901	0.20	+0.1
4,892,349	+		GFF4901	0.20	-0.7
4,892,359	+		GFF4901	0.21	-0.4
4,892,372	-		GFF4901	0.23	-0.2
4,892,374	+		GFF4901	0.23	-1.5
4,892,374	+		GFF4901	0.23	+0.1
4,892,385	+		GFF4901	0.25	-0.8
4,892,390	+		GFF4901	0.25	-0.6
4,892,390	+		GFF4901	0.25	-1.7
4,892,394	+		GFF4901	0.26	+0.4
4,892,402	-		GFF4901	0.27	-0.2
4,892,406	+		GFF4901	0.27	-0.9
4,892,406	+		GFF4901	0.27	-1.8
4,892,408	-		GFF4901	0.28	-1.5
4,892,426	+		GFF4901	0.30	-0.5
4,892,430	-		GFF4901	0.31	+0.2
4,892,434	-		GFF4901	0.31	-0.9
4,892,434	-		GFF4901	0.31	-2.4
4,892,434	-		GFF4901	0.31	-0.7
4,892,434	-		GFF4901	0.31	-0.1
4,892,461	+		GFF4901	0.35	+1.1
4,892,461	+		GFF4901	0.35	+1.2
4,892,465	+		GFF4901	0.35	-1.6
4,892,475	-		GFF4901	0.36	-3.2
4,892,480	+		GFF4901	0.37	-0.5
4,892,488	-		GFF4901	0.38	-1.6
4,892,488	-		GFF4901	0.38	-1.3
4,892,488	-		GFF4901	0.38	-3.2
4,892,507	+		GFF4901	0.41	-0.5
4,892,508	+		GFF4901	0.41	-0.5
4,892,508	+		GFF4901	0.41	-1.6
4,892,516	-		GFF4901	0.42	+1.0
4,892,516	-		GFF4901	0.42	-2.6
4,892,516	-		GFF4901	0.42	+0.1
4,892,546	+		GFF4901	0.46	-0.4
4,892,546	+		GFF4901	0.46	-0.7
4,892,546	+		GFF4901	0.46	-0.8
4,892,546	+		GFF4901	0.46	-1.0
4,892,554	-		GFF4901	0.47	-1.5
4,892,554	-		GFF4901	0.47	+0.3
4,892,554	-		GFF4901	0.47	-2.3
4,892,554	-		GFF4901	0.47	-0.6
4,892,554	-		GFF4901	0.47	-1.5
4,892,554	-		GFF4901	0.47	+0.4
4,892,557	+		GFF4901	0.47	+2.0
4,892,565	-		GFF4901	0.48	+0.4
4,892,603	-		GFF4901	0.53	-0.6
4,892,610	-		GFF4901	0.54	+0.3
4,892,610	-		GFF4901	0.54	-0.4
4,892,623	-		GFF4901	0.56	+1.4
4,892,623	-		GFF4901	0.56	+0.6
4,892,623	-		GFF4901	0.56	+0.0
4,892,627	+		GFF4901	0.56	-0.6
4,892,635	-		GFF4901	0.57	+0.1
4,892,635	-		GFF4901	0.57	-1.9
4,892,635	-		GFF4901	0.57	-1.0
4,892,641	-		GFF4901	0.58	-1.2
4,892,641	-		GFF4901	0.58	-1.3
4,892,645	-		GFF4901	0.59	-1.4
4,892,651	-		GFF4901	0.60	-0.2
4,892,663	+		GFF4901	0.61	+0.0
4,892,663	+		GFF4901	0.61	-0.4
4,892,671	-		GFF4901	0.62	+0.5
4,892,671	-		GFF4901	0.62	-2.2
4,892,679	+		GFF4901	0.63	+0.2
4,892,687	-		GFF4901	0.64	-0.0
4,892,740	+		GFF4901	0.71	-0.6
4,892,740	+		GFF4901	0.71	-0.5
4,892,740	+		GFF4901	0.71	-0.0
4,892,740	+		GFF4901	0.71	+0.3
4,892,740	+		GFF4901	0.71	-0.8
4,892,740	+		GFF4901	0.71	-0.8
4,892,743	-		GFF4901	0.72	-0.2
4,892,748	-		GFF4901	0.72	+0.5
4,892,748	-		GFF4901	0.72	-1.1
4,892,748	-		GFF4901	0.72	+1.3
4,892,748	-		GFF4901	0.72	+1.1
4,892,748	-		GFF4901	0.72	+0.5
4,892,748	-		GFF4901	0.72	-1.7
4,892,761	+		GFF4901	0.74	-2.1
4,892,764	+		GFF4901	0.74	-0.3
4,892,772	-		GFF4901	0.75	+0.7
4,892,776	+		GFF4901	0.76	-0.0
4,892,792	+		GFF4901	0.78	-1.8
4,892,792	+		GFF4901	0.78	-0.8
4,892,792	+		GFF4901	0.78	-1.1
4,892,792	+		GFF4901	0.78	+0.5
4,892,800	-		GFF4901	0.79	-0.0
4,892,800	-		GFF4901	0.79	-1.7
4,892,818	+		GFF4901	0.81	-0.0
4,892,819	+		GFF4901	0.82	+0.0
4,892,824	+		GFF4901	0.82	-0.9
4,892,826	-		GFF4901	0.83	-0.0
4,892,826	-		GFF4901	0.83	-0.8
4,892,854	+		GFF4901	0.86	-1.7
4,892,854	+		GFF4901	0.86	-0.9
4,892,854	+		GFF4901	0.86	-1.8
4,892,862	-		GFF4901	0.87	-0.1
4,892,862	-		GFF4901	0.87	-1.2
4,892,862	-		GFF4901	0.87	-0.2
4,892,862	-		GFF4901	0.87	+0.2
4,892,886	+				+0.5
4,892,886	+				-0.6
4,892,899	+				+0.3
4,892,899	+				-0.3
4,892,899	+				+0.1
4,892,899	+				-0.8
4,892,915	-				+0.5
4,892,933	+				-1.0
4,892,933	+				-3.1
4,892,933	+				-1.4
4,892,941	-				-0.5
4,892,941	-				-0.9
4,892,966	+				-1.3
4,892,966	+				-2.0
4,892,966	+				-1.7
4,892,967	-				+0.8
4,892,974	-				-0.2
4,892,974	-				-0.2
4,892,976	+				+1.2
4,892,984	-				-2.7
4,892,985	+				-1.7
4,892,985	+				+0.0
4,892,993	-				-0.6
4,892,993	-				-1.6
4,892,993	-				-1.3
4,892,994	-				-0.8
4,893,004	+				-0.6
4,893,018	+				-0.0
4,893,029	+				-0.4
4,893,029	+				-0.9
4,893,030	+				-0.4
4,893,042	-				+0.3
4,893,051	+				-0.5
4,893,054	+				-2.6
4,893,062	-				-0.1
4,893,062	-				-0.2
4,893,073	+				-1.7
4,893,073	+				+0.1
4,893,076	-		GFF4902	0.10	-0.1
4,893,078	+		GFF4902	0.10	-1.0
4,893,081	-		GFF4902	0.11	-2.9
4,893,107	-		GFF4902	0.13	+0.8
4,893,112	+		GFF4902	0.14	-0.5
4,893,112	-		GFF4902	0.14	-1.6
4,893,158	+		GFF4902	0.19	-1.8
4,893,161	-		GFF4902	0.19	+1.0
4,893,166	-		GFF4902	0.20	-1.2
4,893,166	-		GFF4902	0.20	-0.4
4,893,170	-		GFF4902	0.20	-0.3
4,893,185	-		GFF4902	0.22	+0.6
4,893,195	-		GFF4902	0.23	-0.7
4,893,195	-		GFF4902	0.23	-0.3
4,893,195	-		GFF4902	0.23	-1.7
4,893,212	-		GFF4902	0.25	-0.6
4,893,241	+		GFF4902	0.28	-0.9
4,893,245	+		GFF4902	0.29	+0.9
4,893,246	+		GFF4902	0.29	-1.1
4,893,251	+		GFF4902	0.29	+1.2
4,893,251	+		GFF4902	0.29	+0.6
4,893,251	+		GFF4902	0.29	-1.9
4,893,253	-		GFF4902	0.30	-0.6
4,893,255	+		GFF4902	0.30	-0.3
4,893,259	-		GFF4902	0.30	-0.7
4,893,259	-		GFF4902	0.30	-0.1
4,893,272	+		GFF4902	0.32	+0.1
4,893,277	+		GFF4902	0.32	+0.2
4,893,280	-		GFF4902	0.33	+0.5
4,893,282	+		GFF4902	0.33	-0.5
4,893,282	+		GFF4902	0.33	+0.3
4,893,290	-		GFF4902	0.34	-0.5
4,893,291	+		GFF4902	0.34	-1.9
4,893,311	-		GFF4902	0.36	+0.3
4,893,317	-		GFF4902	0.37	-1.2
4,893,342	+		GFF4902	0.40	-0.6
4,893,342	+		GFF4902	0.40	-0.5
4,893,342	+		GFF4902	0.40	-0.4
4,893,342	+		GFF4902	0.40	-0.6
4,893,350	-		GFF4902	0.40	+2.0
4,893,362	-		GFF4902	0.42	+1.3
4,893,377	-		GFF4902	0.43	+0.8
4,893,417	+		GFF4902	0.48	-0.2
4,893,425	-		GFF4902	0.49	-1.5
4,893,425	-		GFF4902	0.49	-0.8
4,893,446	+		GFF4902	0.51	-0.6
4,893,446	+		GFF4902	0.51	-2.7
4,893,446	+		GFF4902	0.51	-2.0
4,893,450	+		GFF4902	0.52	+0.3
4,893,450	+		GFF4902	0.52	-1.1
4,893,451	+		GFF4902	0.52	-1.4
4,893,452	-		GFF4902	0.52	-1.2
4,893,454	-		GFF4902	0.52	-0.2
4,893,454	-		GFF4902	0.52	+0.2
4,893,454	-		GFF4902	0.52	-0.5
4,893,456	+		GFF4902	0.52	+0.6
4,893,458	-		GFF4902	0.52	+0.4
4,893,482	+		GFF4902	0.55	-0.9
4,893,487	+		GFF4902	0.56	-0.0
4,893,487	+		GFF4902	0.56	-1.7
4,893,495	-		GFF4902	0.57	-0.4
4,893,495	-		GFF4902	0.57	+0.3
4,893,497	+		GFF4902	0.57	-0.5
4,893,511	+		GFF4902	0.58	-0.0
4,893,525	+		GFF4902	0.60	-1.4
4,893,546	-		GFF4902	0.62	+0.1
4,893,546	-		GFF4902	0.62	-2.4
4,893,546	-		GFF4902	0.62	-0.2
4,893,546	-		GFF4902	0.62	+0.7
4,893,551	-		GFF4902	0.63	+1.2
4,893,553	+		GFF4902	0.63	-0.5
4,893,563	+		GFF4902	0.64	+0.2
4,893,567	+		GFF4902	0.65	-1.2
4,893,567	+		GFF4902	0.65	-1.0
4,893,569	+		GFF4902	0.65	-0.8
4,893,570	-		GFF4902	0.65	+0.1
4,893,570	-		GFF4902	0.65	+0.1
4,893,570	-		GFF4902	0.65	-2.0
4,893,583	-		GFF4902	0.66	+0.0
4,893,600	-		GFF4902	0.68	-0.5
4,893,602	+		GFF4902	0.68	+0.1
4,893,607	+		GFF4902	0.69	+1.1
4,893,608	+		GFF4902	0.69	+2.0
4,893,608	+		GFF4902	0.69	-0.6
4,893,610	-		GFF4902	0.69	-0.0
4,893,616	-		GFF4902	0.70	-0.7
4,893,616	-		GFF4902	0.70	+0.0
4,893,616	-		GFF4902	0.70	-1.5
4,893,616	-		GFF4902	0.70	+0.6
4,893,616	-		GFF4902	0.70	-0.5
4,893,621	-		GFF4902	0.71	-0.3
4,893,626	+		GFF4902	0.71	+0.5
4,893,626	+		GFF4902	0.71	-1.1
4,893,626	+		GFF4902	0.71	-1.4
4,893,636	+		GFF4902	0.72	-0.3
4,893,683	-		GFF4902	0.77	+0.0
4,893,724	+		GFF4902	0.82	+0.0
4,893,732	-		GFF4902	0.83	-0.0
4,893,741	+		GFF4902	0.84	-0.0
4,893,741	+		GFF4902	0.84	+1.0
4,893,744	-		GFF4902	0.84	-0.0
4,893,744	-		GFF4902	0.84	-1.2
4,893,765	+		GFF4902	0.87	-0.1
4,893,796	+				+0.5
4,893,802	+				+0.4
4,893,804	-				-0.6
4,893,810	-				-0.6
4,893,810	-				-3.0
4,893,810	-				+0.5
4,893,823	-				-1.7
4,893,840	+				+0.1
4,893,840	+				-1.2
4,893,855	-				-0.0
4,893,857	+				-0.7
4,893,865	-				-0.2
4,893,873	-				-0.7
4,893,889	+				+0.1
4,893,896	+				-1.5
4,893,897	-				-0.9
4,893,903	-				+0.8
4,893,903	-				+0.5
4,893,904	+				-2.0
4,893,919	+				-0.0
4,893,919	+				-0.7
4,893,919	+				-0.3
4,893,919	+				-0.3
4,893,919	+				-1.6
4,893,927	-				-0.5
4,893,927	-				-0.4
4,893,934	+				-2.2
4,893,934	+				+1.2
4,893,934	+				-1.0
4,893,934	-				-0.1
4,893,942	-				+0.0
4,893,942	-				+1.1
4,893,942	-				+0.6
4,893,947	-				-0.0
4,893,949	+				+0.1
4,893,949	-				-0.9
4,893,957	-				-0.4
4,893,959	+				-0.9
4,893,959	+				-2.0
4,893,959	+				+0.3
4,893,967	-				+0.1
4,893,967	-				-0.5
4,893,981	+				-2.4
4,893,984	-				+0.0
4,893,986	-				+0.7
4,893,989	-				-1.2
4,893,993	+				-1.3
4,893,998	+				-0.1
4,894,001	+				-1.0
4,894,001	+				-0.9
4,894,001	+				-0.0
4,894,001	+				-1.4
4,894,001	-				-2.1
4,894,001	-				+0.1
4,894,006	+				-2.9
4,894,009	-				+0.7
4,894,009	-				-0.3
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