Strain Fitness in Sphingobium sp. HT1-2 around GFF4831

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,815,380	-		GFF4830	0.36	-1.8
4,815,382	+		GFF4830	0.36	+0.1
4,815,397	-		GFF4830	0.37	+0.0
4,815,401	+		GFF4830	0.37	-1.8
4,815,404	-		GFF4830	0.38	+0.5
4,815,404	-		GFF4830	0.38	-0.7
4,815,453	+		GFF4830	0.42	+0.3
4,815,468	+		GFF4830	0.43	-2.0
4,815,476	-		GFF4830	0.43	-0.0
4,815,478	+		GFF4830	0.44	-0.3
4,815,478	+		GFF4830	0.44	+0.5
4,815,478	+		GFF4830	0.44	-0.3
4,815,488	+		GFF4830	0.44	-1.7
4,815,494	+		GFF4830	0.45	+0.4
4,815,496	+		GFF4830	0.45	-0.1
4,815,497	+		GFF4830	0.45	+0.8
4,815,502	-		GFF4830	0.46	-0.6
4,815,504	-		GFF4830	0.46	+0.5
4,815,504	-		GFF4830	0.46	-1.6
4,815,504	-		GFF4830	0.46	+0.9
4,815,514	-		GFF4830	0.47	+0.7
4,815,541	+		GFF4830	0.49	-0.2
4,815,542	-		GFF4830	0.49	-2.4
4,815,547	-		GFF4830	0.49	+0.4
4,815,549	-		GFF4830	0.49	+1.5
4,815,557	+		GFF4830	0.50	+1.3
4,815,557	+		GFF4830	0.50	+0.3
4,815,565	-		GFF4830	0.51	-1.8
4,815,565	-		GFF4830	0.51	+0.2
4,815,565	-		GFF4830	0.51	+0.9
4,815,565	-		GFF4830	0.51	+0.2
4,815,594	+		GFF4830	0.53	-0.4
4,815,602	-		GFF4830	0.54	+1.5
4,815,602	-		GFF4830	0.54	+0.1
4,815,602	-		GFF4830	0.54	+0.7
4,815,618	+		GFF4830	0.55	+0.8
4,815,645	+		GFF4830	0.57	-0.2
4,815,654	+		GFF4830	0.58	-0.9
4,815,719	+		GFF4830	0.63	-1.0
4,815,722	-		GFF4830	0.63	+0.2
4,815,764	-		GFF4830	0.67	+0.4
4,815,764	-		GFF4830	0.67	+0.3
4,815,764	-		GFF4830	0.67	+0.5
4,815,769	+		GFF4830	0.67	-0.2
4,815,769	+		GFF4830	0.67	-0.7
4,815,783	+		GFF4830	0.68	-0.5
4,815,783	+		GFF4830	0.68	+0.5
4,815,817	+		GFF4830	0.71	-0.5
4,815,817	+		GFF4830	0.71	+0.5
4,815,819	+		GFF4830	0.71	-0.4
4,815,825	-		GFF4830	0.72	+0.5
4,815,827	+		GFF4830	0.72	+1.3
4,815,827	+		GFF4830	0.72	-0.3
4,815,835	-		GFF4830	0.73	-0.3
4,815,846	+		GFF4830	0.74	-1.2
4,815,846	+		GFF4830	0.74	-0.7
4,815,846	+		GFF4830	0.74	+0.7
4,815,846	+		GFF4830	0.74	-0.9
4,815,846	+		GFF4830	0.74	+1.2
4,815,854	-		GFF4830	0.74	-0.4
4,815,854	-		GFF4830	0.74	-1.5
4,815,854	-		GFF4830	0.74	+0.1
4,815,854	-		GFF4830	0.74	-0.5
4,815,854	-		GFF4830	0.74	+1.0
4,815,854	-		GFF4830	0.74	+0.9
4,815,854	-		GFF4830	0.74	-0.6
4,815,854	-		GFF4830	0.74	-0.2
4,815,854	-		GFF4830	0.74	-0.3
4,815,861	-		GFF4830	0.75	+0.1
4,815,891	-		GFF4830	0.77	-0.7
4,815,893	+		GFF4830	0.77	+0.6
4,815,900	+		GFF4830	0.78	+2.0
4,815,901	-		GFF4830	0.78	-0.7
4,815,903	-		GFF4830	0.78	-0.1
4,815,908	-		GFF4830	0.79	-0.2
4,815,913	-		GFF4830	0.79	-1.8
4,815,930	-		GFF4830	0.80	+1.3
4,815,937	+		GFF4830	0.81	-0.1
4,815,948	+		GFF4830	0.82	+0.8
4,815,955	+		GFF4830	0.82	+0.5
4,815,955	+		GFF4830	0.82	-0.7
4,815,955	+		GFF4830	0.82	+0.3
4,815,955	+		GFF4830	0.82	-0.7
4,815,963	-		GFF4830	0.83	+0.7
4,815,963	-		GFF4830	0.83	-0.3
4,815,973	+		GFF4830	0.84	+0.1
4,815,983	+		GFF4830	0.85	-0.2
4,815,991	-		GFF4830	0.85	-1.7
4,815,993	-		GFF4830	0.86	-0.3
4,816,018	-		GFF4830	0.88	-0.1
4,816,021	+		GFF4830	0.88	-0.3
4,816,021	+		GFF4830	0.88	-2.4
4,816,021	+		GFF4830	0.88	+0.2
4,816,026	+		GFF4830	0.88	-0.3
4,816,029	-		GFF4830	0.89	-0.9
4,816,033	+		GFF4830	0.89	+0.0
4,816,034	-		GFF4830	0.89	-0.6
4,816,041	-		GFF4830	0.89	-0.5
4,816,041	-		GFF4830	0.89	-1.7
4,816,041	-		GFF4830	0.89	+0.8
4,816,052	+				+0.9
4,816,052	+				-1.1
4,816,058	-				+0.6
4,816,060	-				+0.5
4,816,060	-				-0.8
4,816,063	-				-1.3
4,816,065	+				+0.7
4,816,065	+				-1.2
4,816,065	+				-0.5
4,816,073	-				+0.0
4,816,073	-				+0.8
4,816,073	-				+0.6
4,816,073	-				-0.1
4,816,117	+				+0.7
4,816,120	-				-1.8
4,816,122	+				+0.1
4,816,122	+				+0.2
4,816,122	+				-3.0
4,816,122	+				+0.3
4,816,125	-				+0.7
4,816,125	-				+0.6
4,816,130	-				+0.5
4,816,130	-				-0.6
4,816,130	-				-0.2
4,816,130	-				+0.2
4,816,149	-				+0.2
4,816,186	+				-0.8
4,816,187	-				+0.5
4,816,223	+				+1.2
4,816,231	-				-0.7
4,816,249	-				-0.3
4,816,253	-				-0.0
4,816,295	+				-0.6
4,816,303	+				+0.6
4,816,311	-				-0.1
4,816,311	-				+0.5
4,816,318	+				-0.3
4,816,328	-				+0.6
4,816,354	+				-0.4
4,816,375	+				+0.4
4,816,381	-				+0.5
4,816,383	-				-0.3
4,816,383	-				+0.3
4,816,412	-				+1.0
4,816,414	+				+0.6
4,816,414	+				-1.6
4,816,422	-		GFF4831	0.12	+0.9
4,816,422	-		GFF4831	0.12	-1.7
4,816,431	-		GFF4831	0.14	+0.8
4,816,435	+		GFF4831	0.15	-0.5
4,816,441	-		GFF4831	0.17	-2.0
4,816,452	+		GFF4831	0.20	-1.6
4,816,454	+		GFF4831	0.21	-0.1
4,816,454	+		GFF4831	0.21	+1.3
4,816,462	-		GFF4831	0.23	+0.2
4,816,462	-		GFF4831	0.23	+0.7
4,816,462	-		GFF4831	0.23	+1.1
4,816,493	+		GFF4831	0.31	+1.3
4,816,493	+		GFF4831	0.31	+0.7
4,816,501	-		GFF4831	0.33	-0.9
4,816,502	+		GFF4831	0.33	+0.5
4,816,517	+		GFF4831	0.37	+1.2
4,816,525	-		GFF4831	0.39	-0.3
4,816,538	+		GFF4831	0.43	+1.3
4,816,540	-		GFF4831	0.43	+0.6
4,816,543	+		GFF4831	0.44	+0.5
4,816,543	+		GFF4831	0.44	-0.3
4,816,544	-		GFF4831	0.45	+0.9
4,816,546	-		GFF4831	0.45	+0.9
4,816,546	-		GFF4831	0.45	-0.5
4,816,546	-		GFF4831	0.45	-0.9
4,816,546	-		GFF4831	0.45	-0.3
4,816,551	-		GFF4831	0.46	-0.8
4,816,556	+		GFF4831	0.48	-1.8
4,816,575	+		GFF4831	0.53	-1.2
4,816,583	-		GFF4831	0.55	+0.2
4,816,587	+		GFF4831	0.56	+0.6
4,816,590	-		GFF4831	0.57	-0.1
4,816,590	-		GFF4831	0.57	-0.6
4,816,590	-		GFF4831	0.57	+0.7
4,816,590	-		GFF4831	0.57	-0.6
4,816,647	-		GFF4831	0.72	+0.1
4,816,659	+		GFF4831	0.75	-2.5
4,816,659	+		GFF4831	0.75	+0.3
4,816,664	+		GFF4831	0.77	+0.8
4,816,667	-		GFF4831	0.77	-0.2
4,816,672	-		GFF4831	0.79	+0.4
4,816,672	-		GFF4831	0.79	+0.9
4,816,677	-		GFF4831	0.80	+1.2
4,816,677	-		GFF4831	0.80	+0.4
4,816,677	-		GFF4831	0.80	-1.4
4,816,730	-				-0.1
4,816,808	-				+1.0
4,816,825	+				+0.6
4,816,825	+				+0.1
4,816,849	+				+1.7
4,816,864	-				+0.8
4,816,866	+				-0.3
4,816,872	+				+0.9
4,816,874	-				+0.6
4,816,877	+				+0.5
4,816,880	-				+0.3
4,816,880	-				+0.2
4,816,884	+				+1.1
4,816,884	+				-1.6
4,816,888	+				-0.9
4,816,890	-				+0.1
4,816,890	-				+0.3
4,816,890	-				-2.1
4,816,890	-				+0.2
4,816,890	-				-1.2
4,816,892	+				-0.2
4,816,892	+				-0.4
4,816,892	+				+0.5
4,816,900	-				-0.1
4,816,900	-				-0.2
4,816,909	+				-0.1
4,816,943	-				+1.0
4,816,955	+				+0.9
4,816,965	+				+0.9
4,816,967	+				+1.7
4,816,970	+				+0.9
4,816,970	+				-0.8
4,816,970	+				+0.0
4,816,972	+				+0.4
4,816,973	-				-0.7
4,816,973	-				-1.6
4,816,973	-				-0.2
4,816,973	-				+0.4
4,816,978	-				+0.6
4,816,978	-				+0.9
4,816,982	+				-0.4
4,816,982	+				+1.4
4,816,982	+				-0.9
4,816,982	+				+1.0
4,816,982	+				-1.0
4,816,990	-				+0.6
4,816,990	-				-0.1
4,816,990	-				-0.1
4,816,990	-				+0.6
4,816,993	+				-0.8
4,817,007	-				-0.1
4,817,007	-				+1.2
4,817,019	-				+1.2
4,817,020	+				+0.4
4,817,056	+				+0.1
4,817,060	+				-0.3
4,817,061	+				+1.1
4,817,064	-				+1.7
4,817,069	+				+1.1
4,817,084	-				+0.8
4,817,108	+				-0.5
4,817,108	+				+0.4
4,817,108	+				-2.0
4,817,113	+				+0.3
4,817,113	+				-0.2
4,817,116	-				-0.3
4,817,121	-				-0.7
4,817,126	-				+1.1
4,817,126	-				+0.4
4,817,132	+				-0.9
4,817,135	+				-0.4
4,817,141	+				-0.9
4,817,148	-				+0.6
4,817,188	+		GFF4832	0.32	+1.5
4,817,192	+		GFF4832	0.35	+0.0
4,817,193	-		GFF4832	0.36	-1.2
4,817,196	-		GFF4832	0.38	-0.3
4,817,197	+		GFF4832	0.39	+0.7
4,817,197	+		GFF4832	0.39	+0.3
4,817,197	+		GFF4832	0.39	-1.9
4,817,197	+		GFF4832	0.39	-0.1
4,817,197	+		GFF4832	0.39	+0.9
4,817,200	-		GFF4832	0.41	+0.9
4,817,205	-		GFF4832	0.45	+0.9
4,817,205	-		GFF4832	0.45	-0.6
4,817,205	-		GFF4832	0.45	-0.5
4,817,205	-		GFF4832	0.45	-1.0
4,817,205	-		GFF4832	0.45	+0.8
4,817,207	+		GFF4832	0.46	+0.9
4,817,210	-		GFF4832	0.48	+0.9
4,817,212	+		GFF4832	0.50	-0.7
4,817,217	-		GFF4832	0.54	+0.5
4,817,243	+		GFF4832	0.73	-0.1
4,817,271	+				-2.1
4,817,301	+				+0.1
4,817,306	+				-0.0
4,817,364	+		GFF4833	0.10	+1.1
4,817,419	+		GFF4833	0.17	+0.8
4,817,421	+		GFF4833	0.17	+0.4
4,817,426	-		GFF4833	0.18	-0.4
4,817,429	-		GFF4833	0.18	+0.7
4,817,443	+		GFF4833	0.20	+0.6
4,817,443	+		GFF4833	0.20	-2.4
4,817,443	+		GFF4833	0.20	+0.1
4,817,443	+		GFF4833	0.20	+0.2
4,817,450	-		GFF4833	0.20	+0.2
4,817,462	+		GFF4833	0.22	+0.5
4,817,462	+		GFF4833	0.22	-3.2
4,817,462	+		GFF4833	0.22	+1.9
4,817,462	+		GFF4833	0.22	-0.4
4,817,462	+		GFF4833	0.22	+0.6
4,817,462	+		GFF4833	0.22	+0.1
4,817,462	+		GFF4833	0.22	-0.0
4,817,470	-		GFF4833	0.23	-0.7
4,817,470	-		GFF4833	0.23	-0.1
4,817,477	-		GFF4833	0.24	-0.0
4,817,478	+		GFF4833	0.24	+1.2
4,817,481	-		GFF4833	0.24	-1.6
4,817,501	+		GFF4833	0.27	+0.9
4,817,512	+		GFF4833	0.28	+0.5
4,817,518	-		GFF4833	0.29	-0.5
4,817,518	-		GFF4833	0.29	-1.1
4,817,531	-		GFF4833	0.30	-0.2
4,817,536	+		GFF4833	0.31	+0.9
4,817,536	+		GFF4833	0.31	-0.3
4,817,536	+		GFF4833	0.31	+0.9
4,817,536	+		GFF4833	0.31	-1.0
4,817,536	+		GFF4833	0.31	+0.2
4,817,538	+		GFF4833	0.31	-1.1
4,817,544	-		GFF4833	0.32	+0.1
4,817,550	+		GFF4833	0.32	-2.0
4,817,558	-		GFF4833	0.33	-2.2
4,817,565	-		GFF4833	0.34	+1.2
4,817,575	-		GFF4833	0.35	-1.5
4,817,575	-		GFF4833	0.35	-0.3
4,817,585	+		GFF4833	0.37	+1.2
4,817,586	+		GFF4833	0.37	+2.2
4,817,586	+		GFF4833	0.37	-1.8
4,817,586	+		GFF4833	0.37	+1.0
4,817,591	+		GFF4833	0.37	+1.7
4,817,593	-		GFF4833	0.38	+0.9
4,817,599	-		GFF4833	0.38	-0.6
4,817,600	-		GFF4833	0.39	+0.8
4,817,606	-		GFF4833	0.39	+1.4
4,817,622	+		GFF4833	0.41	+0.4
4,817,622	+		GFF4833	0.41	-1.0
4,817,680	+		GFF4833	0.48	+0.5
4,817,680	+		GFF4833	0.48	+0.7
4,817,688	-		GFF4833	0.49	-0.2
4,817,688	-		GFF4833	0.49	-0.6
4,817,698	+		GFF4833	0.50	-0.5
4,817,706	-		GFF4833	0.51	-0.7
4,817,741	+		GFF4833	0.55	-1.7
4,817,748	-		GFF4833	0.56	-2.1