Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4825 and GFF4826 are separated by 80 nucleotides GFF4826 and GFF4827 are separated by 113 nucleotides GFF4827 and GFF4828 are separated by 144 nucleotides
GFF4825 - Toxin HigB / Protein kinase domain of HipA, at 4,810,859 to 4,812,040
GFF4825
GFF4826 - HipB protein @ Antitoxin HigA, at 4,812,121 to 4,812,354
GFF4826
GFF4827 - hypothetical protein, at 4,812,468 to 4,813,082
GFF4827
GFF4828 - IncQ plasmid conjugative transfer DNA nicking endonuclease TraR (pTi VirD2 homolog), at 4,813,227 to 4,814,333
GFF4828
Position (kb) 4812
4813
4814 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4811.470 kb on + strand, within GFF4825 at 4811.470 kb on + strand, within GFF4825 at 4811.478 kb on - strand, within GFF4825 at 4811.478 kb on - strand, within GFF4825 at 4811.494 kb on + strand, within GFF4825 at 4811.496 kb on + strand, within GFF4825 at 4811.513 kb on + strand, within GFF4825 at 4811.518 kb on + strand, within GFF4825 at 4811.548 kb on + strand, within GFF4825 at 4811.571 kb on + strand, within GFF4825 at 4811.571 kb on + strand, within GFF4825 at 4811.571 kb on + strand, within GFF4825 at 4811.571 kb on + strand, within GFF4825 at 4811.571 kb on + strand, within GFF4825 at 4811.571 kb on + strand, within GFF4825 at 4811.573 kb on - strand, within GFF4825 at 4811.573 kb on - strand, within GFF4825 at 4811.576 kb on + strand, within GFF4825 at 4811.579 kb on - strand, within GFF4825 at 4811.581 kb on + strand, within GFF4825 at 4811.581 kb on + strand, within GFF4825 at 4811.584 kb on - strand, within GFF4825 at 4811.589 kb on - strand, within GFF4825 at 4811.589 kb on - strand, within GFF4825 at 4811.589 kb on - strand, within GFF4825 at 4811.592 kb on - strand, within GFF4825 at 4811.594 kb on - strand, within GFF4825 at 4811.640 kb on - strand, within GFF4825 at 4811.643 kb on + strand, within GFF4825 at 4811.648 kb on + strand, within GFF4825 at 4811.651 kb on - strand, within GFF4825 at 4811.681 kb on + strand, within GFF4825 at 4811.690 kb on + strand, within GFF4825 at 4811.710 kb on + strand, within GFF4825 at 4811.728 kb on - strand, within GFF4825 at 4811.744 kb on + strand, within GFF4825 at 4811.749 kb on + strand, within GFF4825 at 4811.751 kb on + strand, within GFF4825 at 4811.752 kb on - strand, within GFF4825 at 4811.756 kb on + strand, within GFF4825 at 4811.764 kb on - strand, within GFF4825 at 4811.785 kb on + strand, within GFF4825 at 4811.807 kb on + strand, within GFF4825 at 4811.824 kb on + strand, within GFF4825 at 4811.824 kb on + strand, within GFF4825 at 4811.827 kb on - strand, within GFF4825 at 4811.832 kb on - strand, within GFF4825 at 4811.907 kb on + strand, within GFF4825 at 4811.942 kb on - strand at 4811.942 kb on - strand at 4811.942 kb on - strand at 4811.947 kb on - strand at 4811.947 kb on - strand at 4811.947 kb on - strand at 4811.959 kb on + strand at 4812.006 kb on - strand at 4812.029 kb on + strand at 4812.037 kb on - strand at 4812.072 kb on - strand at 4812.077 kb on + strand at 4812.077 kb on + strand at 4812.077 kb on + strand at 4812.082 kb on + strand at 4812.122 kb on + strand at 4812.150 kb on + strand, within GFF4826 at 4812.158 kb on - strand, within GFF4826 at 4812.357 kb on + strand at 4812.388 kb on - strand at 4812.533 kb on - strand, within GFF4827 at 4812.544 kb on + strand, within GFF4827 at 4812.571 kb on + strand, within GFF4827 at 4812.612 kb on + strand, within GFF4827 at 4812.620 kb on - strand, within GFF4827 at 4812.630 kb on - strand, within GFF4827 at 4812.630 kb on - strand, within GFF4827 at 4812.644 kb on + strand, within GFF4827 at 4812.663 kb on + strand, within GFF4827 at 4812.695 kb on + strand, within GFF4827 at 4812.695 kb on + strand, within GFF4827 at 4812.696 kb on + strand, within GFF4827 at 4812.698 kb on - strand, within GFF4827 at 4812.703 kb on - strand, within GFF4827 at 4812.703 kb on - strand, within GFF4827 at 4812.703 kb on - strand, within GFF4827 at 4812.724 kb on - strand, within GFF4827 at 4812.724 kb on - strand, within GFF4827 at 4812.724 kb on - strand, within GFF4827 at 4812.768 kb on + strand, within GFF4827 at 4812.773 kb on + strand, within GFF4827 at 4812.776 kb on + strand, within GFF4827 at 4812.781 kb on - strand, within GFF4827 at 4812.786 kb on + strand, within GFF4827 at 4812.793 kb on + strand, within GFF4827 at 4812.808 kb on + strand, within GFF4827 at 4812.808 kb on + strand, within GFF4827 at 4812.827 kb on - strand, within GFF4827 at 4812.829 kb on + strand, within GFF4827 at 4812.829 kb on + strand, within GFF4827 at 4812.829 kb on + strand, within GFF4827 at 4812.842 kb on - strand, within GFF4827 at 4812.857 kb on - strand, within GFF4827 at 4812.869 kb on + strand, within GFF4827 at 4812.877 kb on - strand, within GFF4827 at 4812.883 kb on + strand, within GFF4827 at 4812.891 kb on - strand, within GFF4827 at 4812.920 kb on + strand, within GFF4827 at 4812.939 kb on - strand, within GFF4827 at 4812.957 kb on - strand, within GFF4827 at 4812.968 kb on + strand, within GFF4827 at 4812.976 kb on - strand, within GFF4827 at 4813.008 kb on + strand, within GFF4827 at 4813.015 kb on + strand, within GFF4827 at 4813.023 kb on + strand at 4813.023 kb on + strand at 4813.023 kb on - strand at 4813.037 kb on - strand at 4813.078 kb on + strand at 4813.081 kb on - strand at 4813.090 kb on - strand at 4813.100 kb on - strand at 4813.163 kb on + strand at 4813.192 kb on + strand at 4813.232 kb on + strand at 4813.243 kb on + strand at 4813.243 kb on + strand at 4813.251 kb on - strand at 4813.251 kb on - strand at 4813.251 kb on - strand at 4813.260 kb on + strand at 4813.268 kb on - strand at 4813.278 kb on - strand at 4813.278 kb on - strand at 4813.278 kb on - strand at 4813.283 kb on - strand at 4813.283 kb on - strand at 4813.285 kb on - strand at 4813.290 kb on + strand at 4813.298 kb on - strand at 4813.305 kb on - strand at 4813.330 kb on - strand at 4813.342 kb on - strand, within GFF4828 at 4813.352 kb on - strand, within GFF4828 at 4813.448 kb on + strand, within GFF4828 at 4813.448 kb on + strand, within GFF4828 at 4813.456 kb on - strand, within GFF4828 at 4813.538 kb on - strand, within GFF4828 at 4813.555 kb on - strand, within GFF4828 at 4813.561 kb on + strand, within GFF4828 at 4813.569 kb on - strand, within GFF4828 at 4813.577 kb on + strand, within GFF4828 at 4813.577 kb on + strand, within GFF4828 at 4813.578 kb on + strand, within GFF4828 at 4813.585 kb on - strand, within GFF4828 at 4813.586 kb on - strand, within GFF4828 at 4813.586 kb on - strand, within GFF4828 at 4813.586 kb on - strand, within GFF4828 at 4813.586 kb on - strand, within GFF4828 at 4813.597 kb on + strand, within GFF4828 at 4813.602 kb on + strand, within GFF4828 at 4813.607 kb on + strand, within GFF4828 at 4813.615 kb on + strand, within GFF4828 at 4813.615 kb on - strand, within GFF4828 at 4813.648 kb on + strand, within GFF4828 at 4813.654 kb on + strand, within GFF4828 at 4813.682 kb on + strand, within GFF4828 at 4813.682 kb on + strand, within GFF4828 at 4813.682 kb on + strand, within GFF4828 at 4813.690 kb on - strand, within GFF4828 at 4813.719 kb on - strand, within GFF4828 at 4813.727 kb on - strand, within GFF4828 at 4813.734 kb on - strand, within GFF4828 at 4813.734 kb on - strand, within GFF4828 at 4813.740 kb on + strand, within GFF4828 at 4813.746 kb on + strand, within GFF4828 at 4813.760 kb on - strand, within GFF4828 at 4813.780 kb on - strand, within GFF4828 at 4813.782 kb on + strand, within GFF4828 at 4813.796 kb on + strand, within GFF4828 at 4813.803 kb on + strand, within GFF4828 at 4813.804 kb on - strand, within GFF4828 at 4813.806 kb on + strand, within GFF4828 at 4813.814 kb on - strand, within GFF4828 at 4813.825 kb on + strand, within GFF4828 at 4813.842 kb on - strand, within GFF4828 at 4813.857 kb on + strand, within GFF4828 at 4813.865 kb on - strand, within GFF4828 at 4813.865 kb on - strand, within GFF4828 at 4813.871 kb on + strand, within GFF4828 at 4813.889 kb on + strand, within GFF4828 at 4813.903 kb on + strand, within GFF4828 at 4813.911 kb on + strand, within GFF4828 at 4813.913 kb on + strand, within GFF4828 at 4813.923 kb on + strand, within GFF4828 at 4813.931 kb on - strand, within GFF4828 at 4813.945 kb on - strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.975 kb on + strand, within GFF4828 at 4813.978 kb on - strand, within GFF4828 at 4813.980 kb on + strand, within GFF4828 at 4813.980 kb on + strand, within GFF4828 at 4813.980 kb on + strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.983 kb on - strand, within GFF4828 at 4813.988 kb on - strand, within GFF4828 at 4813.988 kb on - strand, within GFF4828 at 4813.988 kb on - strand, within GFF4828 at 4813.994 kb on + strand, within GFF4828 at 4813.998 kb on - strand, within GFF4828 at 4814.002 kb on - strand, within GFF4828 at 4814.060 kb on + strand, within GFF4828
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 4,811,470 + GFF4825 0.52 -0.1 4,811,470 + GFF4825 0.52 +0.3 4,811,478 - GFF4825 0.52 +2.0 4,811,478 - GFF4825 0.52 +0.3 4,811,494 + GFF4825 0.54 +0.3 4,811,496 + GFF4825 0.54 -3.0 4,811,513 + GFF4825 0.55 +0.8 4,811,518 + GFF4825 0.56 -0.8 4,811,548 + GFF4825 0.58 +0.4 4,811,571 + GFF4825 0.60 +0.0 4,811,571 + GFF4825 0.60 +2.0 4,811,571 + GFF4825 0.60 -0.3 4,811,571 + GFF4825 0.60 -0.8 4,811,571 + GFF4825 0.60 +1.1 4,811,571 + GFF4825 0.60 -1.7 4,811,573 - GFF4825 0.60 -1.1 4,811,573 - GFF4825 0.60 -0.9 4,811,576 + GFF4825 0.61 +0.6 4,811,579 - GFF4825 0.61 -0.2 4,811,581 + GFF4825 0.61 -0.7 4,811,581 + GFF4825 0.61 +0.9 4,811,584 - GFF4825 0.61 +0.9 4,811,589 - GFF4825 0.62 -0.3 4,811,589 - GFF4825 0.62 -1.7 4,811,589 - GFF4825 0.62 +0.5 4,811,592 - GFF4825 0.62 +0.1 4,811,594 - GFF4825 0.62 +0.2 4,811,640 - GFF4825 0.66 -0.8 4,811,643 + GFF4825 0.66 +1.6 4,811,648 + GFF4825 0.67 +1.0 4,811,651 - GFF4825 0.67 -0.9 4,811,681 + GFF4825 0.70 -0.5 4,811,690 + GFF4825 0.70 -0.3 4,811,710 + GFF4825 0.72 -0.0 4,811,728 - GFF4825 0.74 -1.1 4,811,744 + GFF4825 0.75 +0.0 4,811,749 + GFF4825 0.75 +1.0 4,811,751 + GFF4825 0.75 -0.8 4,811,752 - GFF4825 0.76 +1.0 4,811,756 + GFF4825 0.76 +0.8 4,811,764 - GFF4825 0.77 -0.5 4,811,785 + GFF4825 0.78 +1.0 4,811,807 + GFF4825 0.80 -0.4 4,811,824 + GFF4825 0.82 -0.0 4,811,824 + GFF4825 0.82 +0.5 4,811,827 - GFF4825 0.82 -0.3 4,811,832 - GFF4825 0.82 -1.2 4,811,907 + GFF4825 0.89 +0.5 4,811,942 - +0.0 4,811,942 - +0.1 4,811,942 - +0.4 4,811,947 - +0.2 4,811,947 - -0.7 4,811,947 - -2.7 4,811,959 + -0.7 4,812,006 - -0.2 4,812,029 + +0.4 4,812,037 - -0.2 4,812,072 - +0.7 4,812,077 + +1.0 4,812,077 + -0.6 4,812,077 + -0.2 4,812,082 + -1.6 4,812,122 + +1.2 4,812,150 + GFF4826 0.12 -1.7 4,812,158 - GFF4826 0.16 -0.8 4,812,357 + +0.1 4,812,388 - +1.1 4,812,533 - GFF4827 0.11 +0.6 4,812,544 + GFF4827 0.12 +1.1 4,812,571 + GFF4827 0.17 +0.5 4,812,612 + GFF4827 0.23 -0.1 4,812,620 - GFF4827 0.25 +1.1 4,812,630 - GFF4827 0.26 +1.5 4,812,630 - GFF4827 0.26 +1.1 4,812,644 + GFF4827 0.29 +0.2 4,812,663 + GFF4827 0.32 -0.4 4,812,695 + GFF4827 0.37 -1.5 4,812,695 + GFF4827 0.37 -1.0 4,812,696 + GFF4827 0.37 +0.3 4,812,698 - GFF4827 0.37 -0.0 4,812,703 - GFF4827 0.38 -0.0 4,812,703 - GFF4827 0.38 +0.6 4,812,703 - GFF4827 0.38 -0.7 4,812,724 - GFF4827 0.42 +0.6 4,812,724 - GFF4827 0.42 +1.2 4,812,724 - GFF4827 0.42 +1.7 4,812,768 + GFF4827 0.49 -0.2 4,812,773 + GFF4827 0.50 -0.0 4,812,776 + GFF4827 0.50 +0.9 4,812,781 - GFF4827 0.51 +0.5 4,812,786 + GFF4827 0.52 -1.2 4,812,793 + GFF4827 0.53 +0.2 4,812,808 + GFF4827 0.55 +1.2 4,812,808 + GFF4827 0.55 -1.9 4,812,827 - GFF4827 0.58 -0.5 4,812,829 + GFF4827 0.59 -1.0 4,812,829 + GFF4827 0.59 +0.2 4,812,829 + GFF4827 0.59 +0.2 4,812,842 - GFF4827 0.61 -0.4 4,812,857 - GFF4827 0.63 -1.4 4,812,869 + GFF4827 0.65 -1.3 4,812,877 - GFF4827 0.67 -1.5 4,812,883 + GFF4827 0.67 -0.1 4,812,891 - GFF4827 0.69 +1.0 4,812,920 + GFF4827 0.73 +0.4 4,812,939 - GFF4827 0.77 +0.4 4,812,957 - GFF4827 0.80 +0.4 4,812,968 + GFF4827 0.81 -0.8 4,812,976 - GFF4827 0.83 +0.0 4,813,008 + GFF4827 0.88 +0.4 4,813,015 + GFF4827 0.89 +1.0 4,813,023 + -0.7 4,813,023 + -1.0 4,813,023 - +0.0 4,813,037 - +1.2 4,813,078 + -0.1 4,813,081 - +0.5 4,813,090 - -1.4 4,813,100 - +0.2 4,813,163 + +0.1 4,813,192 + +1.0 4,813,232 + +0.5 4,813,243 + +0.4 4,813,243 + +0.4 4,813,251 - +0.4 4,813,251 - -0.0 4,813,251 - +0.4 4,813,260 + +1.0 4,813,268 - -2.3 4,813,278 - -0.2 4,813,278 - -0.4 4,813,278 - +0.1 4,813,283 - +0.7 4,813,283 - +0.5 4,813,285 - -0.8 4,813,290 + -0.7 4,813,298 - -0.4 4,813,305 - -0.5 4,813,330 - -0.3 4,813,342 - GFF4828 0.10 +1.0 4,813,352 - GFF4828 0.11 +0.2 4,813,448 + GFF4828 0.20 +1.1 4,813,448 + GFF4828 0.20 +0.8 4,813,456 - GFF4828 0.21 -2.5 4,813,538 - GFF4828 0.28 +0.2 4,813,555 - GFF4828 0.30 -0.4 4,813,561 + GFF4828 0.30 +0.6 4,813,569 - GFF4828 0.31 -1.2 4,813,577 + GFF4828 0.32 -0.9 4,813,577 + GFF4828 0.32 +0.3 4,813,578 + GFF4828 0.32 -1.9 4,813,585 - GFF4828 0.32 -1.1 4,813,586 - GFF4828 0.32 +0.3 4,813,586 - GFF4828 0.32 +0.5 4,813,586 - GFF4828 0.32 +1.9 4,813,586 - GFF4828 0.32 -1.1 4,813,597 + GFF4828 0.33 +0.9 4,813,602 + GFF4828 0.34 +0.1 4,813,607 + GFF4828 0.34 +0.2 4,813,615 + GFF4828 0.35 -1.1 4,813,615 - GFF4828 0.35 +0.4 4,813,648 + GFF4828 0.38 -1.9 4,813,654 + GFF4828 0.39 +0.0 4,813,682 + GFF4828 0.41 +0.4 4,813,682 + GFF4828 0.41 +1.6 4,813,682 + GFF4828 0.41 +0.3 4,813,690 - GFF4828 0.42 +0.1 4,813,719 - GFF4828 0.44 -0.6 4,813,727 - GFF4828 0.45 -0.3 4,813,734 - GFF4828 0.46 -2.1 4,813,734 - GFF4828 0.46 -0.3 4,813,740 + GFF4828 0.46 -0.6 4,813,746 + GFF4828 0.47 +0.4 4,813,760 - GFF4828 0.48 -0.2 4,813,780 - GFF4828 0.50 +0.1 4,813,782 + GFF4828 0.50 +0.1 4,813,796 + GFF4828 0.51 -0.3 4,813,803 + GFF4828 0.52 -0.3 4,813,804 - GFF4828 0.52 -0.9 4,813,806 + GFF4828 0.52 +0.5 4,813,814 - GFF4828 0.53 +0.4 4,813,825 + GFF4828 0.54 +0.7 4,813,842 - GFF4828 0.56 -1.3 4,813,857 + GFF4828 0.57 +1.1 4,813,865 - GFF4828 0.58 +0.6 4,813,865 - GFF4828 0.58 +1.0 4,813,871 + GFF4828 0.58 +0.6 4,813,889 + GFF4828 0.60 +0.8 4,813,903 + GFF4828 0.61 -1.8 4,813,911 + GFF4828 0.62 -0.1 4,813,913 + GFF4828 0.62 +0.5 4,813,923 + GFF4828 0.63 -0.5 4,813,931 - GFF4828 0.64 -1.4 4,813,945 - GFF4828 0.65 +0.7 4,813,975 + GFF4828 0.68 +0.2 4,813,975 + GFF4828 0.68 +0.8 4,813,975 + GFF4828 0.68 -0.2 4,813,975 + GFF4828 0.68 +0.7 4,813,975 + GFF4828 0.68 -0.4 4,813,975 + GFF4828 0.68 +0.0 4,813,975 + GFF4828 0.68 +0.0 4,813,975 + GFF4828 0.68 +0.9 4,813,975 + GFF4828 0.68 -1.4 4,813,975 + GFF4828 0.68 -1.6 4,813,975 + GFF4828 0.68 -2.6 4,813,975 + GFF4828 0.68 +0.0 4,813,975 + GFF4828 0.68 +0.5 4,813,975 + GFF4828 0.68 -0.9 4,813,975 + GFF4828 0.68 -0.1 4,813,975 + GFF4828 0.68 +0.7 4,813,978 - GFF4828 0.68 +1.0 4,813,980 + GFF4828 0.68 +0.8 4,813,980 + GFF4828 0.68 +1.8 4,813,980 + GFF4828 0.68 -0.0 4,813,983 - GFF4828 0.68 -0.0 4,813,983 - GFF4828 0.68 -0.5 4,813,983 - GFF4828 0.68 +0.0 4,813,983 - GFF4828 0.68 +0.6 4,813,983 - GFF4828 0.68 +1.3 4,813,983 - GFF4828 0.68 +0.2 4,813,983 - GFF4828 0.68 -0.7 4,813,983 - GFF4828 0.68 -0.1 4,813,983 - GFF4828 0.68 +1.0 4,813,983 - GFF4828 0.68 -0.7 4,813,983 - GFF4828 0.68 -0.8 4,813,983 - GFF4828 0.68 -0.5 4,813,983 - GFF4828 0.68 +0.6 4,813,983 - GFF4828 0.68 -0.5 4,813,983 - GFF4828 0.68 +0.2 4,813,983 - GFF4828 0.68 +0.6 4,813,988 - GFF4828 0.69 -0.3 4,813,988 - GFF4828 0.69 -0.5 4,813,988 - GFF4828 0.69 +1.1 4,813,994 + GFF4828 0.69 -0.5 4,813,998 - GFF4828 0.70 -0.6 4,814,002 - GFF4828 0.70 -2.2 4,814,060 + GFF4828 0.75 +0.0
Or see this region's nucleotide sequence