Strain Fitness in Sphingobium sp. HT1-2 around GFF4793

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,787,718	+		GFF4792	0.27	-1.3
4,787,719	-		GFF4792	0.27	-0.6
4,787,749	+		GFF4792	0.30	+0.6
4,787,749	+		GFF4792	0.30	-0.8
4,787,775	+		GFF4792	0.32	+1.2
4,787,783	-		GFF4792	0.32	-0.8
4,787,783	-		GFF4792	0.32	+0.4
4,787,837	-		GFF4792	0.36	-0.7
4,787,846	-		GFF4792	0.37	-1.6
4,787,850	+		GFF4792	0.37	-0.3
4,787,922	-		GFF4792	0.43	-2.1
4,787,936	-		GFF4792	0.44	-2.6
4,787,940	-		GFF4792	0.44	-2.0
4,787,950	-		GFF4792	0.45	-0.0
4,787,967	+		GFF4792	0.46	-1.6
4,787,970	-		GFF4792	0.46	-1.6
4,787,997	+		GFF4792	0.48	-0.1
4,787,997	+		GFF4792	0.48	-2.0
4,787,997	+		GFF4792	0.48	-1.2
4,787,997	+		GFF4792	0.48	-1.1
4,787,997	+		GFF4792	0.48	-1.7
4,788,003	+		GFF4792	0.49	-0.7
4,788,005	-		GFF4792	0.49	-0.1
4,788,005	-		GFF4792	0.49	-0.1
4,788,005	-		GFF4792	0.49	-0.4
4,788,005	-		GFF4792	0.49	+1.1
4,788,020	+		GFF4792	0.50	-1.2
4,788,028	-		GFF4792	0.51	-1.2
4,788,028	-		GFF4792	0.51	-1.8
4,788,028	-		GFF4792	0.51	-0.5
4,788,030	+		GFF4792	0.51	-0.8
4,788,030	-		GFF4792	0.51	-0.4
4,788,041	+		GFF4792	0.52	+0.4
4,788,047	+		GFF4792	0.52	-1.9
4,788,054	+		GFF4792	0.53	+0.4
4,788,072	+		GFF4792	0.54	-2.4
4,788,080	-		GFF4792	0.55	+0.1
4,788,080	-		GFF4792	0.55	-1.7
4,788,084	+		GFF4792	0.55	-0.4
4,788,092	-		GFF4792	0.56	-1.2
4,788,092	-		GFF4792	0.56	-0.5
4,788,095	+		GFF4792	0.56	+0.1
4,788,095	+		GFF4792	0.56	+1.4
4,788,095	+		GFF4792	0.56	+1.1
4,788,095	+		GFF4792	0.56	-0.2
4,788,102	-		GFF4792	0.56	+0.1
4,788,102	-		GFF4792	0.56	+0.2
4,788,103	-		GFF4792	0.56	+0.2
4,788,103	-		GFF4792	0.56	-2.1
4,788,103	-		GFF4792	0.56	-0.3
4,788,105	+		GFF4792	0.56	-0.6
4,788,121	+		GFF4792	0.58	-0.5
4,788,121	+		GFF4792	0.58	-0.1
4,788,121	+		GFF4792	0.58	-0.8
4,788,129	-		GFF4792	0.58	+0.7
4,788,129	-		GFF4792	0.58	-1.3
4,788,148	+		GFF4792	0.60	-0.1
4,788,148	+		GFF4792	0.60	+0.1
4,788,247	-		GFF4792	0.67	-0.6
4,788,247	-		GFF4792	0.67	-0.4
4,788,259	-		GFF4792	0.68	-2.9
4,788,284	+		GFF4792	0.70	-2.0
4,788,284	+		GFF4792	0.70	-1.1
4,788,292	-		GFF4792	0.71	-2.7
4,788,293	+		GFF4792	0.71	+0.9
4,788,301	+		GFF4792	0.71	-0.0
4,788,301	-		GFF4792	0.71	-0.4
4,788,301	-		GFF4792	0.71	-0.9
4,788,301	-		GFF4792	0.71	+0.2
4,788,303	+		GFF4792	0.71	-0.7
4,788,303	+		GFF4792	0.71	-1.0
4,788,309	+		GFF4792	0.72	-1.5
4,788,311	-		GFF4792	0.72	-2.2
4,788,311	-		GFF4792	0.72	-0.1
4,788,311	-		GFF4792	0.72	-2.3
4,788,351	+		GFF4792	0.75	-0.7
4,788,369	+		GFF4792	0.76	-0.1
4,788,409	-		GFF4792	0.79	-0.8
4,788,410	+		GFF4792	0.79	+0.5
4,788,410	+		GFF4792	0.79	-2.5
4,788,410	+		GFF4792	0.79	+0.6
4,788,410	+		GFF4792	0.79	+0.2
4,788,410	+		GFF4792	0.79	+0.1
4,788,410	+		GFF4792	0.79	-0.8
4,788,418	-		GFF4792	0.80	-1.8
4,788,418	-		GFF4792	0.80	-0.3
4,788,420	+		GFF4792	0.80	-2.6
4,788,452	+		GFF4792	0.83	-1.1
4,788,454	+		GFF4792	0.83	-1.4
4,788,512	+		GFF4792	0.87	+0.4
4,788,520	+		GFF4792	0.88	-1.6
4,788,520	+		GFF4792	0.88	-0.1
4,788,520	+		GFF4792	0.88	-1.4
4,788,520	+		GFF4792	0.88	+0.0
4,788,520	-		GFF4792	0.88	-1.0
4,788,528	-		GFF4792	0.88	-1.8
4,788,528	-		GFF4792	0.88	+0.8
4,788,528	-		GFF4792	0.88	-0.3
4,788,528	-		GFF4792	0.88	-0.6
4,788,533	-		GFF4792	0.89	-0.2
4,788,533	-		GFF4792	0.89	-0.8
4,788,533	-		GFF4792	0.89	+0.2
4,788,538	-		GFF4792	0.89	+0.2
4,788,554	-				-2.1
4,788,563	+				-1.6
4,788,571	-				-0.8
4,788,571	-				-0.1
4,788,571	-				-0.6
4,788,573	-				-1.3
4,788,639	+				-0.1
4,788,639	+				-0.2
4,788,639	-				-1.0
4,788,647	-				-1.9
4,788,647	-				-1.8
4,788,647	-				-2.4
4,788,647	-				-1.1
4,788,658	+				+0.1
4,788,665	-				-0.4
4,788,676	+				+0.4
4,788,683	-				-3.2
4,788,683	-				+0.0
4,788,683	-				+0.0
4,788,683	-				+1.7
4,788,683	-				-0.6
4,788,683	-				-2.0
4,788,699	+				-1.4
4,788,699	+				-0.8
4,788,699	+				-0.5
4,788,699	+				-1.2
4,788,707	-				-0.7
4,788,712	-				-0.4
4,788,712	-				-1.8
4,788,716	-				-0.6
4,788,759	-		GFF4793	0.15	-3.0
4,788,779	-		GFF4793	0.20	-2.0
4,788,795	+		GFF4793	0.24	-0.5
4,788,802	+		GFF4793	0.25	-1.0
4,788,802	+		GFF4793	0.25	-0.9
4,788,802	+		GFF4793	0.25	+0.2
4,788,802	+		GFF4793	0.25	-2.4
4,788,803	-		GFF4793	0.26	-0.4
4,788,803	-		GFF4793	0.26	-0.3
4,788,803	-		GFF4793	0.26	-1.7
4,788,810	-		GFF4793	0.27	-0.4
4,788,810	-		GFF4793	0.27	-1.9
4,788,810	-		GFF4793	0.27	-0.2
4,788,810	-		GFF4793	0.27	-1.4
4,788,813	+		GFF4793	0.28	-1.1
4,788,818	+		GFF4793	0.29	-0.9
4,788,818	+		GFF4793	0.29	-0.2
4,788,818	+		GFF4793	0.29	-0.4
4,788,818	+		GFF4793	0.29	+0.2
4,788,818	+		GFF4793	0.29	-0.4
4,788,818	+		GFF4793	0.29	-2.6
4,788,818	+		GFF4793	0.29	-1.2
4,788,818	+		GFF4793	0.29	+0.3
4,788,818	+		GFF4793	0.29	+0.4
4,788,818	+		GFF4793	0.29	-0.2
4,788,820	-		GFF4793	0.30	-1.0
4,788,826	-		GFF4793	0.31	+1.3
4,788,826	-		GFF4793	0.31	-0.1
4,788,831	+		GFF4793	0.33	+0.0
4,788,833	+		GFF4793	0.33	+0.7
4,788,837	+		GFF4793	0.34	-1.2
4,788,841	-		GFF4793	0.35	-2.3
4,788,849	+		GFF4793	0.37	-0.9
4,788,875	+		GFF4793	0.44	+0.4
4,788,887	+		GFF4793	0.47	-0.2
4,788,895	-		GFF4793	0.49	-0.6
4,788,913	+		GFF4793	0.53	-1.8
4,788,916	-		GFF4793	0.54	-1.2
4,788,919	+		GFF4793	0.55	+0.7
4,788,922	-		GFF4793	0.55	-0.5
4,788,924	+		GFF4793	0.56	-1.2
4,788,924	+		GFF4793	0.56	-0.9
4,788,934	+		GFF4793	0.58	-0.4
4,788,942	-		GFF4793	0.60	-1.3
4,788,942	-		GFF4793	0.60	+1.3
4,788,942	-		GFF4793	0.60	-0.2
4,788,942	-		GFF4793	0.60	-0.9
4,788,942	-		GFF4793	0.60	-1.3
4,788,948	+		GFF4793	0.62	-1.3
4,788,948	+		GFF4793	0.62	+0.7
4,788,963	+		GFF4793	0.66	-3.2
4,788,971	+		GFF4793	0.68	-1.7
4,788,984	+		GFF4793	0.71	+0.3
4,788,984	-		GFF4793	0.71	-0.3
4,788,994	+		GFF4793	0.73	+0.6
4,788,994	+		GFF4793	0.73	-0.3
4,788,994	+		GFF4793	0.73	-1.1
4,788,994	+		GFF4793	0.73	-0.3
4,788,994	+		GFF4793	0.73	+0.3
4,788,994	+		GFF4793	0.73	-1.0
4,788,994	+		GFF4793	0.73	-1.1
4,789,002	-		GFF4793	0.75	-1.7
4,789,002	-		GFF4793	0.75	+0.5
4,789,002	-		GFF4793	0.75	-0.3
4,789,002	-		GFF4793	0.75	-0.6
4,789,037	-		GFF4793	0.84	-0.2
4,789,040	+		GFF4793	0.85	-2.2
4,789,041	+		GFF4793	0.85	-2.3
4,789,041	+		GFF4793	0.85	-1.0
4,789,048	-		GFF4793	0.87	-1.4
4,789,048	-		GFF4793	0.87	-0.5
4,789,049	-		GFF4793	0.87	+0.4
4,789,096	+				-0.4
4,790,081	+		GFF4794	0.66	+0.7
4,790,081	+		GFF4794	0.66	-2.1
4,790,081	+		GFF4794	0.66	-3.2
4,790,081	+		GFF4794	0.66	-1.8
4,790,081	+		GFF4794	0.66	-0.6
4,790,081	+		GFF4794	0.66	-1.6
4,790,081	+		GFF4794	0.66	+1.4
4,790,081	+		GFF4794	0.66	-1.2
4,790,081	+		GFF4794	0.66	-2.2
4,790,081	+		GFF4794	0.66	-0.6
4,790,081	+		GFF4794	0.66	+0.2
4,790,089	-		GFF4794	0.67	-2.6
4,790,089	-		GFF4794	0.67	-1.0
4,790,089	-		GFF4794	0.67	-2.4
4,790,089	-		GFF4794	0.67	-1.1
4,790,089	-		GFF4794	0.67	-0.1
4,790,089	-		GFF4794	0.67	-0.3
4,790,089	-		GFF4794	0.67	-1.8