Strain Fitness in Sphingobium sp. HT1-2 around GFF4750

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4748 and GFF4749 are separated by 211 nucleotidesGFF4749 and GFF4750 are separated by 38 nucleotidesGFF4750 and GFF4751 are separated by 14 nucleotides GFF4748 - Uncharacterized membrane-anchored protein, at 4,748,453 to 4,749,097 GFF4748 GFF4749 - hypothetical protein, at 4,749,309 to 4,749,713 GFF4749 GFF4750 - aromatic hydrocarbon degradation membrane protein, at 4,749,752 to 4,751,053 GFF4750 GFF4751 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 4,751,068 to 4,752,729 GFF4751 Position (kb) 4749 4750 4751 4752Strain fitness (log2 ratio) -2 -1 0 1 2at 4748.753 kb on + strand, within GFF4748at 4748.761 kb on - strand, within GFF4748at 4748.769 kb on + strand, within GFF4748at 4748.825 kb on + strand, within GFF4748at 4748.923 kb on - strand, within GFF4748at 4748.940 kb on - strand, within GFF4748at 4748.951 kb on - strand, within GFF4748at 4748.992 kb on + strand, within GFF4748at 4748.999 kb on + strand, within GFF4748at 4749.023 kb on + strand, within GFF4748at 4749.033 kb on + strandat 4749.041 kb on - strandat 4749.082 kb on - strandat 4749.082 kb on - strandat 4749.082 kb on - strandat 4749.084 kb on + strandat 4749.092 kb on - strandat 4749.124 kb on - strandat 4749.126 kb on - strandat 4749.136 kb on + strandat 4749.179 kb on - strandat 4749.318 kb on + strandat 4749.353 kb on - strand, within GFF4749at 4749.353 kb on - strand, within GFF4749at 4749.353 kb on - strand, within GFF4749at 4749.381 kb on + strand, within GFF4749at 4749.446 kb on - strand, within GFF4749at 4749.446 kb on - strand, within GFF4749at 4749.446 kb on - strand, within GFF4749at 4749.446 kb on - strand, within GFF4749at 4749.451 kb on - strand, within GFF4749at 4749.499 kb on + strand, within GFF4749at 4749.514 kb on + strand, within GFF4749at 4749.514 kb on + strand, within GFF4749at 4749.587 kb on + strand, within GFF4749at 4749.600 kb on - strand, within GFF4749at 4749.600 kb on - strand, within GFF4749at 4749.600 kb on - strand, within GFF4749at 4749.606 kb on + strand, within GFF4749at 4749.611 kb on + strand, within GFF4749at 4749.621 kb on + strand, within GFF4749at 4749.653 kb on + strand, within GFF4749at 4749.667 kb on - strand, within GFF4749at 4749.667 kb on - strand, within GFF4749at 4749.676 kb on - strandat 4749.680 kb on + strandat 4749.692 kb on + strandat 4749.722 kb on - strandat 4749.758 kb on - strandat 4749.905 kb on + strand, within GFF4750at 4749.913 kb on - strand, within GFF4750at 4749.916 kb on + strand, within GFF4750at 4749.937 kb on + strand, within GFF4750at 4749.971 kb on + strand, within GFF4750at 4749.972 kb on - strand, within GFF4750at 4749.978 kb on + strand, within GFF4750at 4749.978 kb on + strand, within GFF4750at 4749.978 kb on - strand, within GFF4750at 4749.986 kb on - strand, within GFF4750at 4750.032 kb on - strand, within GFF4750at 4750.071 kb on + strand, within GFF4750at 4750.079 kb on - strand, within GFF4750at 4750.079 kb on - strand, within GFF4750at 4750.079 kb on - strand, within GFF4750at 4750.079 kb on - strand, within GFF4750at 4750.094 kb on + strand, within GFF4750at 4750.094 kb on + strand, within GFF4750at 4750.102 kb on - strand, within GFF4750at 4750.140 kb on + strand, within GFF4750at 4750.163 kb on + strand, within GFF4750at 4750.171 kb on - strand, within GFF4750at 4750.195 kb on + strand, within GFF4750at 4750.197 kb on + strand, within GFF4750at 4750.205 kb on + strand, within GFF4750at 4750.207 kb on + strand, within GFF4750at 4750.207 kb on + strand, within GFF4750at 4750.207 kb on + strand, within GFF4750at 4750.207 kb on + strand, within GFF4750at 4750.215 kb on - strand, within GFF4750at 4750.215 kb on - strand, within GFF4750at 4750.215 kb on - strand, within GFF4750at 4750.215 kb on - strand, within GFF4750at 4750.215 kb on - strand, within GFF4750at 4750.285 kb on - strand, within GFF4750at 4750.368 kb on + strand, within GFF4750at 4750.397 kb on + strand, within GFF4750at 4750.400 kb on - strand, within GFF4750at 4750.405 kb on - strand, within GFF4750at 4750.463 kb on - strand, within GFF4750at 4750.526 kb on + strand, within GFF4750at 4750.601 kb on + strand, within GFF4750at 4750.605 kb on + strand, within GFF4750at 4750.606 kb on + strand, within GFF4750at 4750.611 kb on + strand, within GFF4750at 4750.619 kb on - strand, within GFF4750at 4750.636 kb on - strand, within GFF4750at 4750.637 kb on + strand, within GFF4750at 4750.664 kb on + strand, within GFF4750at 4750.672 kb on - strand, within GFF4750at 4750.672 kb on - strand, within GFF4750at 4750.715 kb on + strand, within GFF4750at 4750.715 kb on + strand, within GFF4750at 4750.751 kb on + strand, within GFF4750at 4750.752 kb on + strand, within GFF4750at 4750.752 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.756 kb on + strand, within GFF4750at 4750.757 kb on + strand, within GFF4750at 4750.764 kb on - strand, within GFF4750at 4750.766 kb on + strand, within GFF4750at 4750.786 kb on + strand, within GFF4750at 4750.821 kb on + strand, within GFF4750at 4750.826 kb on + strand, within GFF4750at 4750.898 kb on - strand, within GFF4750at 4750.915 kb on - strand, within GFF4750at 4750.960 kb on - strandat 4751.024 kb on - strandat 4751.111 kb on + strandat 4751.135 kb on - strandat 4751.160 kb on + strandat 4751.160 kb on + strandat 4751.168 kb on - strandat 4751.168 kb on - strandat 4751.168 kb on - strandat 4751.168 kb on - strandat 4751.168 kb on - strandat 4751.199 kb on + strandat 4751.199 kb on + strandat 4751.207 kb on + strandat 4751.207 kb on - strandat 4751.207 kb on - strandat 4751.221 kb on + strandat 4751.227 kb on + strandat 4751.235 kb on + strand, within GFF4751at 4751.258 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.268 kb on + strand, within GFF4751at 4751.276 kb on - strand, within GFF4751at 4751.276 kb on - strand, within GFF4751at 4751.276 kb on - strand, within GFF4751at 4751.276 kb on - strand, within GFF4751at 4751.287 kb on + strand, within GFF4751at 4751.288 kb on + strand, within GFF4751at 4751.295 kb on - strand, within GFF4751at 4751.296 kb on - strand, within GFF4751at 4751.300 kb on - strand, within GFF4751at 4751.304 kb on - strand, within GFF4751at 4751.333 kb on - strand, within GFF4751at 4751.353 kb on + strand, within GFF4751at 4751.371 kb on - strand, within GFF4751at 4751.373 kb on + strand, within GFF4751at 4751.373 kb on + strand, within GFF4751at 4751.381 kb on - strand, within GFF4751at 4751.381 kb on - strand, within GFF4751at 4751.381 kb on - strand, within GFF4751at 4751.442 kb on - strand, within GFF4751at 4751.444 kb on - strand, within GFF4751at 4751.472 kb on - strand, within GFF4751at 4751.493 kb on + strand, within GFF4751at 4751.493 kb on + strand, within GFF4751at 4751.501 kb on - strand, within GFF4751at 4751.501 kb on - strand, within GFF4751at 4751.501 kb on - strand, within GFF4751at 4751.501 kb on - strand, within GFF4751at 4751.527 kb on - strand, within GFF4751at 4751.532 kb on - strand, within GFF4751at 4751.532 kb on - strand, within GFF4751at 4751.532 kb on - strand, within GFF4751at 4751.542 kb on + strand, within GFF4751at 4751.542 kb on + strand, within GFF4751at 4751.550 kb on - strand, within GFF4751at 4751.557 kb on - strand, within GFF4751at 4751.658 kb on - strand, within GFF4751at 4751.663 kb on - strand, within GFF4751at 4751.695 kb on + strand, within GFF4751at 4751.709 kb on + strand, within GFF4751at 4751.710 kb on + strand, within GFF4751at 4751.717 kb on + strand, within GFF4751at 4751.717 kb on + strand, within GFF4751at 4751.722 kb on + strand, within GFF4751at 4751.722 kb on + strand, within GFF4751at 4751.722 kb on + strand, within GFF4751at 4751.779 kb on + strand, within GFF4751at 4751.780 kb on + strand, within GFF4751at 4751.791 kb on + strand, within GFF4751at 4751.793 kb on + strand, within GFF4751at 4751.799 kb on - strand, within GFF4751at 4751.804 kb on - strand, within GFF4751at 4751.804 kb on - strand, within GFF4751at 4751.856 kb on - strand, within GFF4751at 4751.957 kb on - strand, within GFF4751at 4751.957 kb on - strand, within GFF4751at 4751.967 kb on + strand, within GFF4751at 4751.972 kb on + strand, within GFF4751at 4751.972 kb on + strand, within GFF4751

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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4,748,753 + GFF4748 0.47 +0.9
4,748,761 - GFF4748 0.48 +0.4
4,748,769 + GFF4748 0.49 -0.2
4,748,825 + GFF4748 0.58 +1.3
4,748,923 - GFF4748 0.73 +1.4
4,748,940 - GFF4748 0.76 -0.1
4,748,951 - GFF4748 0.77 +1.2
4,748,992 + GFF4748 0.84 +0.0
4,748,999 + GFF4748 0.85 -2.0
4,749,023 + GFF4748 0.88 -1.6
4,749,033 + +0.6
4,749,041 - +0.6
4,749,082 - -1.9
4,749,082 - +1.0
4,749,082 - -0.3
4,749,084 + -1.1
4,749,092 - -0.9
4,749,124 - -1.9
4,749,126 - +0.7
4,749,136 + -1.2
4,749,179 - -0.2
4,749,318 + +0.3
4,749,353 - GFF4749 0.11 -0.7
4,749,353 - GFF4749 0.11 -0.7
4,749,353 - GFF4749 0.11 +1.1
4,749,381 + GFF4749 0.18 -0.7
4,749,446 - GFF4749 0.34 -1.1
4,749,446 - GFF4749 0.34 +0.6
4,749,446 - GFF4749 0.34 -0.6
4,749,446 - GFF4749 0.34 +0.2
4,749,451 - GFF4749 0.35 -0.4
4,749,499 + GFF4749 0.47 -1.0
4,749,514 + GFF4749 0.51 -0.2
4,749,514 + GFF4749 0.51 -1.4
4,749,587 + GFF4749 0.69 +1.1
4,749,600 - GFF4749 0.72 +0.0
4,749,600 - GFF4749 0.72 -0.9
4,749,600 - GFF4749 0.72 -1.3
4,749,606 + GFF4749 0.73 -0.2
4,749,611 + GFF4749 0.75 +1.8
4,749,621 + GFF4749 0.77 -0.1
4,749,653 + GFF4749 0.85 -0.8
4,749,667 - GFF4749 0.88 +0.2
4,749,667 - GFF4749 0.88 +1.9
4,749,676 - +1.1
4,749,680 + -0.9
4,749,692 + -0.2
4,749,722 - +0.6
4,749,758 - +0.7
4,749,905 + GFF4750 0.12 +0.5
4,749,913 - GFF4750 0.12 -0.1
4,749,916 + GFF4750 0.13 +0.8
4,749,937 + GFF4750 0.14 +1.5
4,749,971 + GFF4750 0.17 +0.9
4,749,972 - GFF4750 0.17 +0.4
4,749,978 + GFF4750 0.17 -1.2
4,749,978 + GFF4750 0.17 +0.2
4,749,978 - GFF4750 0.17 -0.4
4,749,986 - GFF4750 0.18 -0.6
4,750,032 - GFF4750 0.22 -0.5
4,750,071 + GFF4750 0.25 +0.6
4,750,079 - GFF4750 0.25 -1.2
4,750,079 - GFF4750 0.25 +0.6
4,750,079 - GFF4750 0.25 -0.5
4,750,079 - GFF4750 0.25 -2.1
4,750,094 + GFF4750 0.26 -1.5
4,750,094 + GFF4750 0.26 +2.3
4,750,102 - GFF4750 0.27 -0.5
4,750,140 + GFF4750 0.30 +0.4
4,750,163 + GFF4750 0.32 +1.3
4,750,171 - GFF4750 0.32 +0.4
4,750,195 + GFF4750 0.34 -1.5
4,750,197 + GFF4750 0.34 -0.4
4,750,205 + GFF4750 0.35 -0.1
4,750,207 + GFF4750 0.35 +1.0
4,750,207 + GFF4750 0.35 -0.3
4,750,207 + GFF4750 0.35 -0.2
4,750,207 + GFF4750 0.35 +0.5
4,750,215 - GFF4750 0.36 +0.1
4,750,215 - GFF4750 0.36 +0.3
4,750,215 - GFF4750 0.36 -0.7
4,750,215 - GFF4750 0.36 -1.4
4,750,215 - GFF4750 0.36 -0.4
4,750,285 - GFF4750 0.41 -0.5
4,750,368 + GFF4750 0.47 +1.0
4,750,397 + GFF4750 0.50 +0.0
4,750,400 - GFF4750 0.50 +0.8
4,750,405 - GFF4750 0.50 -1.9
4,750,463 - GFF4750 0.55 -0.6
4,750,526 + GFF4750 0.59 +2.3
4,750,601 + GFF4750 0.65 -0.1
4,750,605 + GFF4750 0.66 -1.1
4,750,606 + GFF4750 0.66 +0.6
4,750,611 + GFF4750 0.66 -0.5
4,750,619 - GFF4750 0.67 -0.0
4,750,636 - GFF4750 0.68 +0.1
4,750,637 + GFF4750 0.68 +0.3
4,750,664 + GFF4750 0.70 -0.6
4,750,672 - GFF4750 0.71 +1.4
4,750,672 - GFF4750 0.71 +0.0
4,750,715 + GFF4750 0.74 -0.9
4,750,715 + GFF4750 0.74 +0.6
4,750,751 + GFF4750 0.77 -0.1
4,750,752 + GFF4750 0.77 +1.4
4,750,752 + GFF4750 0.77 -0.3
4,750,756 + GFF4750 0.77 +0.1
4,750,756 + GFF4750 0.77 +1.9
4,750,756 + GFF4750 0.77 +0.0
4,750,756 + GFF4750 0.77 +0.5
4,750,756 + GFF4750 0.77 +0.4
4,750,756 + GFF4750 0.77 -0.3
4,750,756 + GFF4750 0.77 -1.1
4,750,757 + GFF4750 0.77 -0.1
4,750,764 - GFF4750 0.78 +0.9
4,750,766 + GFF4750 0.78 -0.1
4,750,786 + GFF4750 0.79 -1.1
4,750,821 + GFF4750 0.82 -0.2
4,750,826 + GFF4750 0.82 +1.1
4,750,898 - GFF4750 0.88 +0.2
4,750,915 - GFF4750 0.89 +0.3
4,750,960 - +0.9
4,751,024 - +1.2
4,751,111 + -0.9
4,751,135 - -0.3
4,751,160 + +0.7
4,751,160 + +1.1
4,751,168 - +0.2
4,751,168 - -0.2
4,751,168 - +1.4
4,751,168 - +1.2
4,751,168 - +1.1
4,751,199 + +2.1
4,751,199 + +1.0
4,751,207 + +0.6
4,751,207 - -0.9
4,751,207 - +0.6
4,751,221 + -1.2
4,751,227 + +1.2
4,751,235 + GFF4751 0.10 -2.5
4,751,258 + GFF4751 0.11 +0.8
4,751,268 + GFF4751 0.12 -2.2
4,751,268 + GFF4751 0.12 -0.2
4,751,268 + GFF4751 0.12 -0.4
4,751,268 + GFF4751 0.12 -0.6
4,751,268 + GFF4751 0.12 -0.5
4,751,268 + GFF4751 0.12 -0.6
4,751,268 + GFF4751 0.12 -2.2
4,751,276 - GFF4751 0.13 +0.2
4,751,276 - GFF4751 0.13 +0.1
4,751,276 - GFF4751 0.13 -1.1
4,751,276 - GFF4751 0.13 +0.2
4,751,287 + GFF4751 0.13 +0.9
4,751,288 + GFF4751 0.13 +0.2
4,751,295 - GFF4751 0.14 +0.0
4,751,296 - GFF4751 0.14 +0.2
4,751,300 - GFF4751 0.14 -0.6
4,751,304 - GFF4751 0.14 +1.7
4,751,333 - GFF4751 0.16 -1.4
4,751,353 + GFF4751 0.17 +0.9
4,751,371 - GFF4751 0.18 +0.6
4,751,373 + GFF4751 0.18 +0.6
4,751,373 + GFF4751 0.18 +0.1
4,751,381 - GFF4751 0.19 -1.2
4,751,381 - GFF4751 0.19 +0.5
4,751,381 - GFF4751 0.19 -0.5
4,751,442 - GFF4751 0.23 +0.8
4,751,444 - GFF4751 0.23 +0.7
4,751,472 - GFF4751 0.24 +0.2
4,751,493 + GFF4751 0.26 +1.6
4,751,493 + GFF4751 0.26 +0.9
4,751,501 - GFF4751 0.26 +0.3
4,751,501 - GFF4751 0.26 -0.3
4,751,501 - GFF4751 0.26 -0.4
4,751,501 - GFF4751 0.26 +0.5
4,751,527 - GFF4751 0.28 +1.1
4,751,532 - GFF4751 0.28 +0.1
4,751,532 - GFF4751 0.28 -0.1
4,751,532 - GFF4751 0.28 +0.7
4,751,542 + GFF4751 0.29 +0.6
4,751,542 + GFF4751 0.29 +0.1
4,751,550 - GFF4751 0.29 -0.8
4,751,557 - GFF4751 0.29 -0.6
4,751,658 - GFF4751 0.35 +0.4
4,751,663 - GFF4751 0.36 +2.2
4,751,695 + GFF4751 0.38 +0.5
4,751,709 + GFF4751 0.39 -0.5
4,751,710 + GFF4751 0.39 -0.2
4,751,717 + GFF4751 0.39 -1.0
4,751,717 + GFF4751 0.39 -1.2
4,751,722 + GFF4751 0.39 +0.3
4,751,722 + GFF4751 0.39 +0.1
4,751,722 + GFF4751 0.39 -0.9
4,751,779 + GFF4751 0.43 -0.8
4,751,780 + GFF4751 0.43 -0.4
4,751,791 + GFF4751 0.44 +0.2
4,751,793 + GFF4751 0.44 -2.2
4,751,799 - GFF4751 0.44 -0.6
4,751,804 - GFF4751 0.44 -0.3
4,751,804 - GFF4751 0.44 +1.3
4,751,856 - GFF4751 0.47 +0.4
4,751,957 - GFF4751 0.53 -0.0
4,751,957 - GFF4751 0.53 -0.6
4,751,967 + GFF4751 0.54 -1.1
4,751,972 + GFF4751 0.54 +0.5
4,751,972 + GFF4751 0.54 +0.1

Or see this region's nucleotide sequence