Strain Fitness in Sphingobium sp. HT1-2 around GFF4706

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,706,851	+		GFF4705	0.41	+0.1
4,706,865	-		GFF4705	0.43	+0.1
4,706,865	-		GFF4705	0.43	+0.5
4,706,874	+		GFF4705	0.44	+0.4
4,706,875	-		GFF4705	0.45	-0.2
4,706,877	-		GFF4705	0.45	+0.4
4,706,887	-		GFF4705	0.46	+0.8
4,706,948	+		GFF4705	0.55	+0.4
4,706,973	-		GFF4705	0.58	+0.2
4,706,978	+		GFF4705	0.59	-0.1
4,707,026	+		GFF4705	0.66	-0.6
4,707,026	+		GFF4705	0.66	-0.9
4,707,026	+		GFF4705	0.66	+0.2
4,707,027	+		GFF4705	0.66	-2.1
4,707,034	-		GFF4705	0.67	-0.9
4,707,034	-		GFF4705	0.67	-0.4
4,707,040	+		GFF4705	0.68	-1.6
4,707,049	+		GFF4705	0.69	+1.5
4,707,051	+		GFF4705	0.69	-0.1
4,707,057	-		GFF4705	0.70	+0.7
4,707,057	-		GFF4705	0.70	+0.9
4,707,059	+		GFF4705	0.70	-2.3
4,707,066	+		GFF4705	0.71	-0.8
4,707,080	+		GFF4705	0.73	+0.8
4,707,080	+		GFF4705	0.73	-1.2
4,707,085	+		GFF4705	0.74	-1.2
4,707,085	+		GFF4705	0.74	-0.6
4,707,085	+		GFF4705	0.74	-1.0
4,707,085	+		GFF4705	0.74	+0.4
4,707,106	+		GFF4705	0.77	-0.7
4,707,180	-		GFF4705	0.87	+1.9
4,707,190	-		GFF4705	0.88	+0.0
4,707,190	-		GFF4705	0.88	+2.0
4,707,216	+				+1.2
4,707,216	+				-1.4
4,707,216	+				-0.6
4,707,225	-				-0.3
4,707,241	+				+1.3
4,707,249	-				-1.0
4,707,298	+				+1.0
4,707,322	+				-2.7
4,707,336	+				-1.1
4,707,343	-				-1.8
4,707,351	-				+1.5
4,707,357	+				+2.0
4,707,357	+				+1.1
4,707,357	+				-2.0
4,707,364	+				-0.7
4,707,364	+				+0.7
4,707,364	+				-0.1
4,707,365	-				+0.7
4,707,383	+				+0.0
4,707,414	-				-1.8
4,707,438	+				-1.4
4,707,438	+				-1.4
4,707,438	+				+0.8
4,707,438	+				-0.7
4,707,438	+				+0.4
4,707,446	-				+0.9
4,707,455	+				+0.5
4,707,455	+				+0.7
4,707,455	+				+0.0
4,707,463	-				+0.8
4,707,463	-				-0.4
4,707,487	+				-1.2
4,707,495	-				-0.6
4,707,495	-				-0.5
4,707,503	-				-0.9
4,707,507	+				+1.0
4,707,512	+				+0.7
4,707,525	-				-0.7
4,707,535	-				-0.1
4,707,535	-				+0.3
4,707,612	+				+0.0
4,707,617	-				+0.3
4,707,620	-				+0.6
4,707,628	+				+0.6
4,707,653	-				+1.0
4,707,655	+				+0.5
4,707,663	-				-1.1
4,707,703	+				-0.4
4,707,711	-				+1.1
4,707,711	-				-0.4
4,707,728	-				+1.6
4,707,728	-				+1.0
4,707,742	-				-0.4
4,707,747	+				-0.8
4,707,766	+				-1.0
4,707,768	+				-0.1
4,707,768	+				-0.1
4,707,768	+				+0.3
4,707,773	+				-0.6
4,707,773	+				+0.1
4,707,773	+				+0.1
4,707,773	+				-1.5
4,707,773	+				-0.9
4,707,773	+				+0.5
4,707,776	-				+0.7
4,707,776	-				-0.2
4,707,776	-				+0.4
4,707,781	-				+0.6
4,707,781	-				+0.3
4,707,781	-				+1.1
4,707,781	-				-0.1
4,707,781	-				+0.3
4,707,781	-				+0.9
4,707,781	-				-1.7
4,707,781	-				-0.6
4,707,781	-				+1.2
4,707,781	-				-0.6
4,707,781	-				-0.1
4,707,847	+				-1.4
4,707,854	-				+0.6
4,707,856	+				+1.1
4,707,890	-				-0.7
4,707,895	-				-0.6
4,707,896	+				-2.7
4,707,903	-				+1.2
4,707,937	-				+1.6
4,707,939	+				+2.0
4,707,979	-		GFF4706	0.14	-0.4
4,707,995	-		GFF4706	0.16	+0.8
4,708,039	-		GFF4706	0.21	-0.1
4,708,040	+		GFF4706	0.21	-0.4
4,708,050	-		GFF4706	0.22	+0.2
4,708,081	-		GFF4706	0.25	-0.8
4,708,094	+		GFF4706	0.26	+0.7
4,708,099	-		GFF4706	0.27	+0.3
4,708,119	+		GFF4706	0.29	+0.5
4,708,122	-		GFF4706	0.29	+0.9
4,708,126	-		GFF4706	0.30	+0.5
4,708,126	-		GFF4706	0.30	+0.8
4,708,159	+		GFF4706	0.33	-0.6
4,708,162	-		GFF4706	0.34	+0.5
4,708,162	-		GFF4706	0.34	-2.3
4,708,162	-		GFF4706	0.34	-0.0
4,708,162	-		GFF4706	0.34	-0.9
4,708,162	-		GFF4706	0.34	-0.1
4,708,186	+		GFF4706	0.36	-1.7
4,708,195	-		GFF4706	0.37	-0.6
4,708,218	+		GFF4706	0.40	-1.6
4,708,226	-		GFF4706	0.41	-0.6
4,708,232	+		GFF4706	0.41	-0.3
4,708,240	-		GFF4706	0.42	-1.5
4,708,243	+		GFF4706	0.42	-1.6
4,708,251	-		GFF4706	0.43	+0.4
4,708,258	+		GFF4706	0.44	+0.3
4,708,282	+		GFF4706	0.47	-0.1
4,708,282	+		GFF4706	0.47	+0.9
4,708,290	-		GFF4706	0.48	-0.3
4,708,381	+		GFF4706	0.57	+1.1
4,708,392	+		GFF4706	0.58	+0.5
4,708,395	-		GFF4706	0.59	+1.1
4,708,399	+		GFF4706	0.59	-1.3
4,708,400	-		GFF4706	0.59	+0.1
4,708,400	-		GFF4706	0.59	+0.6
4,708,404	+		GFF4706	0.60	-0.3
4,708,407	-		GFF4706	0.60	-1.1
4,708,429	+		GFF4706	0.62	-0.3
4,708,437	-		GFF4706	0.63	-0.7
4,708,437	-		GFF4706	0.63	-0.0
4,708,452	-		GFF4706	0.65	-0.9
4,708,468	+		GFF4706	0.67	-0.4
4,708,475	+		GFF4706	0.67	-1.0
4,708,487	+		GFF4706	0.69	+0.1
4,708,500	-		GFF4706	0.70	+1.0
4,708,517	-		GFF4706	0.72	+0.3
4,708,528	+		GFF4706	0.73	-0.6
4,708,528	+		GFF4706	0.73	+1.0
4,708,536	-		GFF4706	0.74	-0.1
4,708,536	-		GFF4706	0.74	-1.3
4,708,567	+		GFF4706	0.77	-0.7
4,708,576	+		GFF4706	0.78	+0.9
4,708,578	+		GFF4706	0.78	+0.9
4,708,624	+		GFF4706	0.83	+0.2
4,708,624	+		GFF4706	0.83	+0.0
4,708,624	+		GFF4706	0.83	-0.6
4,708,624	+		GFF4706	0.83	-0.2
4,708,624	+		GFF4706	0.83	-0.6
4,708,632	-		GFF4706	0.84	+1.1
4,708,632	-		GFF4706	0.84	+0.5
4,708,644	-		GFF4706	0.86	-0.3
4,708,655	+		GFF4706	0.87	-0.6
4,708,655	+		GFF4706	0.87	-0.4
4,708,698	+				-0.4
4,708,704	+				+0.7
4,708,734	+				+0.6
4,708,736	+				+1.1
4,708,736	+				-0.5
4,708,744	-				+0.3
4,708,744	-				-1.7
4,708,850	-				-0.9
4,708,850	-				+1.6
4,708,874	-				+0.7
4,708,912	+				+0.8
4,708,917	+				+1.4
4,708,920	-				-0.1
4,708,920	-				-0.2
4,708,925	-				+0.6
4,708,935	-				-0.3
4,708,943	+				+0.1
4,708,959	-				+0.6
4,708,962	+				+0.4
4,708,963	+				-0.1
4,708,968	+				-0.8
4,708,968	+				-0.3
4,708,968	+				-0.2
4,708,971	-		GFF4707	0.10	+1.0
4,708,971	-		GFF4707	0.10	-2.1
4,708,976	-		GFF4707	0.11	+1.1
4,708,976	-		GFF4707	0.11	-0.6
4,708,976	-		GFF4707	0.11	-0.9
4,708,976	-		GFF4707	0.11	+0.6
4,709,001	-		GFF4707	0.13	+1.0
4,709,001	-		GFF4707	0.13	-1.4
4,709,001	-		GFF4707	0.13	-1.4
4,709,001	-		GFF4707	0.13	+0.9
4,709,006	+		GFF4707	0.14	+1.1
4,709,016	+		GFF4707	0.14	-0.2
4,709,083	+		GFF4707	0.21	-0.3
4,709,083	+		GFF4707	0.21	+0.1
4,709,083	+		GFF4707	0.21	+0.2
4,709,083	+		GFF4707	0.21	+0.5
4,709,088	+		GFF4707	0.22	+0.7
4,709,091	-		GFF4707	0.22	-0.3
4,709,091	-		GFF4707	0.22	-1.8
4,709,096	-		GFF4707	0.22	+1.2
4,709,101	-		GFF4707	0.23	-1.4
4,709,129	-		GFF4707	0.26	+0.4
4,709,131	+		GFF4707	0.26	+0.9
4,709,151	+		GFF4707	0.28	-1.4
4,709,151	+		GFF4707	0.28	+1.4
4,709,158	-		GFF4707	0.29	+0.8
4,709,158	-		GFF4707	0.29	+0.6
4,709,159	-		GFF4707	0.29	+0.6
4,709,198	+		GFF4707	0.32	+0.7
4,709,198	+		GFF4707	0.32	-1.6
4,709,199	+		GFF4707	0.33	+0.9
4,709,203	+		GFF4707	0.33	+0.6
4,709,206	-		GFF4707	0.33	+1.6
4,709,280	-		GFF4707	0.41	+0.2
4,709,291	+		GFF4707	0.42	+0.2
4,709,299	-		GFF4707	0.42	+0.5
4,709,306	-		GFF4707	0.43	-0.3
4,709,325	-		GFF4707	0.45	-0.8
4,709,333	+		GFF4707	0.46	-1.0
4,709,350	+		GFF4707	0.47	+0.0
4,709,350	+		GFF4707	0.47	-1.7
4,709,358	-		GFF4707	0.48	+0.1
4,709,358	-		GFF4707	0.48	-0.9
4,709,364	-		GFF4707	0.49	+0.1
4,709,396	-		GFF4707	0.52	-0.3
4,709,415	+		GFF4707	0.54	-1.6
4,709,420	+		GFF4707	0.54	+0.2
4,709,423	-		GFF4707	0.55	-0.9
4,709,436	-		GFF4707	0.56	-0.7
4,709,442	+		GFF4707	0.57	+0.1
4,709,444	+		GFF4707	0.57	-1.5
4,709,444	+		GFF4707	0.57	-0.7
4,709,444	+		GFF4707	0.57	+0.9
4,709,444	+		GFF4707	0.57	-0.8
4,709,444	+		GFF4707	0.57	+0.6
4,709,452	-		GFF4707	0.57	+0.7
4,709,452	-		GFF4707	0.57	+0.0
4,709,452	-		GFF4707	0.57	+0.1
4,709,452	-		GFF4707	0.57	+0.5
4,709,452	-		GFF4707	0.57	+0.9
4,709,452	-		GFF4707	0.57	+0.1
4,709,477	+		GFF4707	0.60	+0.5
4,709,498	-		GFF4707	0.62	+1.3
4,709,509	+		GFF4707	0.63	+0.0
4,709,509	+		GFF4707	0.63	+0.5
4,709,517	-		GFF4707	0.64	+0.4
4,709,539	-		GFF4707	0.66	+0.6
4,709,584	-		GFF4707	0.71	+0.3
4,709,610	-		GFF4707	0.73	+0.2
4,709,628	-		GFF4707	0.75	+1.4
4,709,628	-		GFF4707	0.75	+0.3
4,709,637	+		GFF4707	0.76	-0.8
4,709,638	-		GFF4707	0.76	-1.4
4,709,646	-		GFF4707	0.77	+1.0
4,709,663	-		GFF4707	0.78	+0.0
4,709,665	+		GFF4707	0.79	+0.1
4,709,670	+		GFF4707	0.79	-0.9
4,709,690	-		GFF4707	0.81	+0.4
4,709,701	-		GFF4707	0.82	+0.4
4,709,701	-		GFF4707	0.82	+0.9
4,709,703	-		GFF4707	0.82	-0.2
4,709,703	-		GFF4707	0.82	-0.9
4,709,712	+		GFF4707	0.83	+0.3
4,709,712	+		GFF4707	0.83	-0.8
4,709,712	+		GFF4707	0.83	-0.7
4,709,720	-		GFF4707	0.84	+0.9
4,709,720	-		GFF4707	0.84	-0.1
4,709,720	-		GFF4707	0.84	-2.7
4,709,720	-		GFF4707	0.84	+1.3
4,709,736	+		GFF4707	0.86	+0.5
4,709,739	-		GFF4707	0.86	+0.8
4,709,739	-		GFF4707	0.86	-0.4
4,709,741	+		GFF4707	0.86	+0.3
4,709,749	-		GFF4707	0.87	-0.7