Strain Fitness in Sphingobium sp. HT1-2 around GFF4688

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,688,675	+				-1.6
4,688,675	+				-0.1
4,688,683	-				+0.6
4,688,683	-				+0.9
4,688,700	-				+0.0
4,688,700	-				-0.1
4,688,702	+				+0.7
4,688,702	+				+0.7
4,688,702	+				-0.1
4,688,702	+				+0.8
4,688,710	-				-0.9
4,688,710	-				+1.0
4,688,710	-				+0.7
4,688,710	-				+0.4
4,688,710	-				+1.1
4,688,719	+				-0.9
4,688,719	+				+0.5
4,688,719	+				+0.0
4,688,727	-		GFF4687	0.10	+0.7
4,688,727	-		GFF4687	0.10	+1.1
4,688,727	-		GFF4687	0.10	+0.0
4,688,735	-		GFF4687	0.11	+0.4
4,688,749	+		GFF4687	0.12	+0.6
4,688,755	+		GFF4687	0.13	+0.1
4,688,760	+		GFF4687	0.13	+0.2
4,688,760	+		GFF4687	0.13	+0.6
4,688,768	-		GFF4687	0.14	-1.6
4,688,783	-		GFF4687	0.16	-0.0
4,688,792	+		GFF4687	0.16	+0.7
4,688,794	-		GFF4687	0.17	+0.6
4,688,800	-		GFF4687	0.17	-1.2
4,688,817	-		GFF4687	0.19	+1.6
4,688,828	-		GFF4687	0.20	+0.2
4,688,832	-		GFF4687	0.20	-0.8
4,688,853	+		GFF4687	0.22	+0.1
4,688,885	+		GFF4687	0.25	+1.4
4,688,885	+		GFF4687	0.25	-1.1
4,688,921	+		GFF4687	0.29	+0.6
4,688,929	-		GFF4687	0.30	+0.7
4,688,929	-		GFF4687	0.30	-0.6
4,688,940	-		GFF4687	0.31	-0.1
4,688,950	+		GFF4687	0.32	-1.9
4,688,950	+		GFF4687	0.32	+0.3
4,688,950	-		GFF4687	0.32	-0.6
4,688,958	-		GFF4687	0.32	+0.5
4,688,971	-		GFF4687	0.34	+0.7
4,688,975	+		GFF4687	0.34	+0.4
4,688,982	-		GFF4687	0.35	-1.4
4,688,994	+		GFF4687	0.36	-0.5
4,689,018	+		GFF4687	0.38	-0.2
4,689,077	+		GFF4687	0.44	+0.1
4,689,077	+		GFF4687	0.44	-0.2
4,689,077	+		GFF4687	0.44	-2.2
4,689,077	+		GFF4687	0.44	-1.4
4,689,077	+		GFF4687	0.44	-0.4
4,689,077	+		GFF4687	0.44	+0.0
4,689,077	+		GFF4687	0.44	-0.1
4,689,077	+		GFF4687	0.44	+1.7
4,689,077	+		GFF4687	0.44	-0.2
4,689,077	+		GFF4687	0.44	+0.5
4,689,077	+		GFF4687	0.44	+0.3
4,689,085	-		GFF4687	0.45	+0.8
4,689,085	-		GFF4687	0.45	+0.1
4,689,085	-		GFF4687	0.45	+1.7
4,689,085	-		GFF4687	0.45	-0.4
4,689,096	-		GFF4687	0.46	-0.5
4,689,106	-		GFF4687	0.47	+0.4
4,689,142	+		GFF4687	0.50	+0.1
4,689,155	-		GFF4687	0.51	-0.4
4,689,171	+		GFF4687	0.53	+0.7
4,689,179	-		GFF4687	0.54	-0.2
4,689,198	-		GFF4687	0.55	+0.6
4,689,230	+		GFF4687	0.59	+1.1
4,689,230	+		GFF4687	0.59	+0.2
4,689,230	+		GFF4687	0.59	-0.5
4,689,238	-		GFF4687	0.59	+1.5
4,689,238	-		GFF4687	0.59	+0.9
4,689,243	-		GFF4687	0.60	+2.0
4,689,264	-		GFF4687	0.62	+0.2
4,689,271	+		GFF4687	0.63	+0.4
4,689,273	+		GFF4687	0.63	-2.2
4,689,273	+		GFF4687	0.63	+0.2
4,689,273	+		GFF4687	0.63	+0.6
4,689,274	+		GFF4687	0.63	+0.7
4,689,278	+		GFF4687	0.63	+0.3
4,689,280	-		GFF4687	0.63	-0.7
4,689,281	-		GFF4687	0.63	+0.3
4,689,286	-		GFF4687	0.64	-0.3
4,689,287	+		GFF4687	0.64	-2.0
4,689,287	+		GFF4687	0.64	-0.1
4,689,287	+		GFF4687	0.64	+1.4
4,689,295	-		GFF4687	0.65	-0.0
4,689,316	-		GFF4687	0.67	+0.5
4,689,318	+		GFF4687	0.67	-0.5
4,689,321	+		GFF4687	0.67	+0.1
4,689,323	+		GFF4687	0.68	-0.6
4,689,323	+		GFF4687	0.68	-1.4
4,689,323	+		GFF4687	0.68	+0.6
4,689,326	-		GFF4687	0.68	+0.5
4,689,326	-		GFF4687	0.68	-1.4
4,689,331	+		GFF4687	0.68	-1.0
4,689,331	+		GFF4687	0.68	-0.4
4,689,333	+		GFF4687	0.68	+1.6
4,689,333	+		GFF4687	0.68	+1.2
4,689,333	+		GFF4687	0.68	+1.0
4,689,333	+		GFF4687	0.68	-0.2
4,689,333	+		GFF4687	0.68	-1.5
4,689,339	-		GFF4687	0.69	-0.3
4,689,339	-		GFF4687	0.69	-1.7
4,689,341	-		GFF4687	0.69	+0.4
4,689,346	+		GFF4687	0.70	+0.1
4,689,346	+		GFF4687	0.70	+1.5
4,689,346	+		GFF4687	0.70	+0.1
4,689,346	+		GFF4687	0.70	+0.9
4,689,351	+		GFF4687	0.70	+0.1
4,689,354	-		GFF4687	0.71	+0.5
4,689,354	-		GFF4687	0.71	+1.1
4,689,354	-		GFF4687	0.71	-1.0
4,689,356	-		GFF4687	0.71	+0.3
4,689,358	+		GFF4687	0.71	+1.5
4,689,358	+		GFF4687	0.71	-0.6
4,689,366	-		GFF4687	0.72	-0.0
4,689,371	-		GFF4687	0.72	+0.5
4,689,379	-		GFF4687	0.73	+0.3
4,689,397	+		GFF4687	0.75	+0.6
4,689,401	-		GFF4687	0.75	-2.2
4,689,414	-		GFF4687	0.76	-0.0
4,689,422	+		GFF4687	0.77	-0.6
4,689,424	+		GFF4687	0.77	-0.2
4,689,424	+		GFF4687	0.77	-0.0
4,689,424	+		GFF4687	0.77	+1.8
4,689,430	+		GFF4687	0.78	+0.2
4,689,445	+		GFF4687	0.79	-0.3
4,689,445	-		GFF4687	0.79	+1.0
4,689,453	-		GFF4687	0.80	+0.4
4,689,453	-		GFF4687	0.80	+1.3
4,689,453	-		GFF4687	0.80	+1.1
4,689,455	+		GFF4687	0.80	+1.7
4,689,460	+		GFF4687	0.81	+0.1
4,689,460	+		GFF4687	0.81	+0.5
4,689,463	-		GFF4687	0.81	+1.5
4,689,468	-		GFF4687	0.82	-0.5
4,689,468	-		GFF4687	0.82	+0.2
4,689,497	-		GFF4687	0.84	-0.5
4,689,502	+		GFF4687	0.85	-0.5
4,689,514	-		GFF4687	0.86	-0.4
4,689,519	-		GFF4687	0.86	-0.3
4,689,555	+		GFF4687	0.90	-0.9
4,689,560	+				-0.9
4,689,560	+				-1.1
4,689,560	+				-0.3
4,689,563	-				-0.6
4,689,563	-				+0.9
4,689,565	+				+0.5
4,689,565	+				+0.1
4,689,568	-				+0.8
4,689,568	-				-0.7
4,689,568	-				-0.1
4,689,568	-				-0.0
4,689,568	-				+0.3
4,689,568	-				+1.2
4,689,573	-				+0.2
4,689,573	-				+1.1
4,689,573	-				-0.4
4,689,573	-				+1.3
4,689,670	-				-0.5
4,689,692	-				+1.0
4,689,697	-				-2.3
4,689,704	-				+0.4
4,689,709	-				+0.2
4,689,733	+				-1.3
4,689,733	+				+0.2
4,689,734	+				-0.8
4,689,734	+				-0.6
4,689,734	+				-0.6
4,689,741	-				-0.4
4,689,741	-				-2.3
4,689,742	-				-0.8
4,689,742	-				-0.2
4,689,742	-				+0.0
4,689,742	-				+0.7
4,689,749	+				+1.2
4,689,752	-				+0.2
4,689,757	-				+0.1
4,689,759	+				+0.6
4,689,759	+				+0.2
4,689,767	-		GFF4688	0.10	-0.3
4,689,767	-		GFF4688	0.10	-1.7
4,689,767	-		GFF4688	0.10	+1.1
4,689,767	-		GFF4688	0.10	-1.7
4,689,767	-		GFF4688	0.10	-0.4
4,689,767	-		GFF4688	0.10	+1.0
4,689,767	-		GFF4688	0.10	-2.4
4,689,767	-		GFF4688	0.10	+0.6
4,689,769	+		GFF4688	0.10	+0.4
4,689,777	-		GFF4688	0.11	+0.3
4,689,777	-		GFF4688	0.11	-0.6
4,689,793	+		GFF4688	0.13	+0.1
4,689,814	-		GFF4688	0.15	+0.6
4,689,818	-		GFF4688	0.15	+1.0
4,689,869	+		GFF4688	0.21	-0.0
4,689,869	+		GFF4688	0.21	+0.3
4,689,926	-		GFF4688	0.26	+0.2
4,689,941	-		GFF4688	0.28	+1.1
4,689,948	-		GFF4688	0.28	-0.5
4,689,958	-		GFF4688	0.30	-0.5
4,690,002	+		GFF4688	0.34	+0.8
4,690,003	-		GFF4688	0.34	+1.4
4,690,009	-		GFF4688	0.35	-0.7
4,690,009	-		GFF4688	0.35	-0.6
4,690,022	+		GFF4688	0.36	-0.4
4,690,022	+		GFF4688	0.36	+0.3
4,690,022	+		GFF4688	0.36	+0.8
4,690,022	+		GFF4688	0.36	-0.2
4,690,028	-		GFF4688	0.37	-0.4
4,690,028	-		GFF4688	0.37	+0.7
4,690,030	-		GFF4688	0.37	-1.5
4,690,030	-		GFF4688	0.37	+1.2
4,690,033	+		GFF4688	0.37	-0.2
4,690,041	-		GFF4688	0.38	-0.6
4,690,047	+		GFF4688	0.38	+0.3
4,690,055	-		GFF4688	0.39	-1.5
4,690,065	+		GFF4688	0.40	-0.1
4,690,065	+		GFF4688	0.40	+0.2
4,690,065	+		GFF4688	0.40	-1.8
4,690,065	+		GFF4688	0.40	+0.9
4,690,065	+		GFF4688	0.40	-0.7
4,690,073	-		GFF4688	0.41	+0.1
4,690,075	+		GFF4688	0.41	-0.7
4,690,088	-		GFF4688	0.43	-2.1
4,690,100	+		GFF4688	0.44	-1.0
4,690,108	-		GFF4688	0.45	-1.5
4,690,108	-		GFF4688	0.45	+0.6
4,690,111	+		GFF4688	0.45	+1.0
4,690,111	+		GFF4688	0.45	+1.6
4,690,111	+		GFF4688	0.45	+1.3
4,690,113	-		GFF4688	0.45	-0.1
4,690,119	-		GFF4688	0.46	+1.5
4,690,121	+		GFF4688	0.46	+0.9
4,690,139	+		GFF4688	0.48	+0.9
4,690,139	+		GFF4688	0.48	+0.6
4,690,139	+		GFF4688	0.48	-0.7
4,690,144	+		GFF4688	0.48	+0.0
4,690,144	+		GFF4688	0.48	+0.4
4,690,147	-		GFF4688	0.49	+1.0
4,690,147	-		GFF4688	0.49	+0.5
4,690,147	-		GFF4688	0.49	-1.4
4,690,152	-		GFF4688	0.49	+1.8
4,690,152	-		GFF4688	0.49	-2.6
4,690,177	-		GFF4688	0.52	-3.0
4,690,193	-		GFF4688	0.53	-0.2
4,690,193	-		GFF4688	0.53	+0.0
4,690,196	+		GFF4688	0.53	-0.3
4,690,210	-		GFF4688	0.55	+1.9
4,690,227	+		GFF4688	0.57	+0.4
4,690,248	+		GFF4688	0.59	-0.3
4,690,248	+		GFF4688	0.59	+0.5
4,690,248	+		GFF4688	0.59	+1.1
4,690,248	+		GFF4688	0.59	+0.8
4,690,250	-		GFF4688	0.59	-0.7
4,690,250	-		GFF4688	0.59	+0.4
4,690,256	-		GFF4688	0.60	-0.4
4,690,262	-		GFF4688	0.60	+1.0
4,690,262	-		GFF4688	0.60	+0.1
4,690,281	-		GFF4688	0.62	-0.4
4,690,281	-		GFF4688	0.62	-1.0
4,690,292	-		GFF4688	0.63	-0.4
4,690,350	-		GFF4688	0.69	+0.3
4,690,361	+		GFF4688	0.70	-0.1
4,690,369	-		GFF4688	0.71	+0.3
4,690,369	-		GFF4688	0.71	+0.8
4,690,369	-		GFF4688	0.71	+1.3
4,690,373	-		GFF4688	0.71	-0.1
4,690,383	+		GFF4688	0.72	-1.9
4,690,383	+		GFF4688	0.72	-0.3
4,690,391	-		GFF4688	0.73	-0.6
4,690,408	+		GFF4688	0.75	+1.2
4,690,408	+		GFF4688	0.75	+0.1
4,690,408	+		GFF4688	0.75	-0.2
4,690,408	+		GFF4688	0.75	+0.3
4,690,416	-		GFF4688	0.76	+0.3
4,690,416	-		GFF4688	0.76	-1.1
4,690,416	-		GFF4688	0.76	-1.5
4,690,421	+		GFF4688	0.76	+1.3
4,690,424	-		GFF4688	0.76	-1.8
4,690,424	-		GFF4688	0.76	-1.6
4,690,443	-		GFF4688	0.78	+0.1
4,690,444	+		GFF4688	0.78	+0.1
4,690,444	+		GFF4688	0.78	+1.3
4,690,444	+		GFF4688	0.78	+0.9
4,690,444	+		GFF4688	0.78	+1.2
4,690,444	+		GFF4688	0.78	+0.0
4,690,448	-		GFF4688	0.79	-1.2
4,690,448	-		GFF4688	0.79	-0.4
4,690,448	-		GFF4688	0.79	+1.0
4,690,452	-		GFF4688	0.79	-2.0
4,690,452	-		GFF4688	0.79	+1.0
4,690,452	-		GFF4688	0.79	+0.6
4,690,458	-		GFF4688	0.80	+0.0
4,690,467	+		GFF4688	0.81	+0.1
4,690,467	+		GFF4688	0.81	-0.8
4,690,467	+		GFF4688	0.81	+0.4
4,690,467	+		GFF4688	0.81	-0.4
4,690,467	+		GFF4688	0.81	+1.9
4,690,467	+		GFF4688	0.81	+1.5
4,690,467	+		GFF4688	0.81	+0.8
4,690,492	+		GFF4688	0.83	-1.0
4,690,497	+		GFF4688	0.84	+0.9
4,690,497	+		GFF4688	0.84	+0.5
4,690,505	-		GFF4688	0.85	+0.3
4,690,519	+		GFF4688	0.86	+1.1
4,690,527	-		GFF4688	0.87	-0.8
4,690,553	+		GFF4688	0.89	+0.2
4,690,592	-				+0.1
4,690,599	+				-0.0
4,690,604	-				-1.4
4,690,616	+				+0.2
4,690,616	+				-0.1
4,690,616	+				+0.3
4,690,618	+				-0.0
4,690,618	+				+0.4
4,690,618	+				+0.6
4,690,624	-				-0.5
4,690,624	-				-0.6
4,690,626	-				+0.0
4,690,644	+				+0.4
4,690,658	+				-0.4
4,690,674	-				+1.1
4,690,735	-				+1.0
4,690,735	-				+1.3
4,690,744	-				-0.6
4,690,746	+				+0.3
4,690,746	+				-0.6
4,690,751	+				+0.4
4,690,751	+				-0.8
4,690,751	+				+0.4
4,690,751	+				-2.5
4,690,751	+				-0.4
4,690,751	+				+0.8
4,690,751	+				+1.7
4,690,751	+				+1.0
4,690,751	+				+0.1
4,690,751	+				-1.5
4,690,754	-				+0.4
4,690,759	-				-0.2
4,690,759	-				+0.2
4,690,759	-				-0.1
4,690,759	-				+0.3
4,690,759	-				+1.1
4,690,759	-				+0.2
4,690,775	+				+0.9
4,690,782	-				+0.7
4,690,794	+		GFF4689	0.10	+0.2
4,690,794	+		GFF4689	0.10	+0.5
4,690,794	+		GFF4689	0.10	+0.8
4,690,802	-		GFF4689	0.11	+0.3
4,690,802	-		GFF4689	0.11	+0.1
4,690,802	-		GFF4689	0.11	-2.0
4,690,825	+		GFF4689	0.13	-0.3
4,690,854	+		GFF4689	0.15	+0.8
4,690,863	+		GFF4689	0.16	-1.1
4,690,863	+		GFF4689	0.16	-1.5
4,690,863	+		GFF4689	0.16	-0.5
4,690,871	-		GFF4689	0.17	+1.2
4,690,875	-		GFF4689	0.17	-0.2
4,690,883	+		GFF4689	0.18	+0.1
4,690,896	-		GFF4689	0.19	+0.2
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4,691,017	+		GFF4689	0.28	-1.0
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4,691,025	-		GFF4689	0.29	-1.9
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4,691,375	+		GFF4689	0.57	-1.7
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4,691,618	+		GFF4689	0.77	-0.7
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4,691,647	+		GFF4689	0.79	+0.0
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