Strain Fitness in Sphingobium sp. HT1-2 around GFF4643

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,642,186	-		GFF4641	0.38	-0.4
4,642,206	-		GFF4641	0.40	-0.8
4,642,206	-		GFF4641	0.40	-0.4
4,642,206	-		GFF4641	0.40	-0.1
4,642,231	+		GFF4641	0.43	-1.7
4,642,240	-		GFF4641	0.45	-0.4
4,642,276	-		GFF4641	0.49	-0.7
4,642,281	+		GFF4641	0.50	-0.6
4,642,281	+		GFF4641	0.50	-0.2
4,642,286	+		GFF4641	0.50	-0.4
4,642,294	-		GFF4641	0.51	+0.0
4,642,294	-		GFF4641	0.51	+1.5
4,642,299	-		GFF4641	0.52	+1.0
4,642,346	-		GFF4641	0.58	+1.1
4,642,346	-		GFF4641	0.58	-1.2
4,642,381	+		GFF4641	0.62	+1.4
4,642,381	+		GFF4641	0.62	-1.2
4,642,381	+		GFF4641	0.62	+0.5
4,642,382	-		GFF4641	0.63	-1.3
4,642,400	+		GFF4641	0.65	+0.7
4,642,458	+		GFF4641	0.72	-0.2
4,642,458	+		GFF4641	0.72	-1.5
4,642,458	+		GFF4641	0.72	+0.3
4,642,458	+		GFF4641	0.72	+0.6
4,642,463	+		GFF4641	0.73	+1.0
4,642,463	+		GFF4641	0.73	-0.3
4,642,463	+		GFF4641	0.73	-0.5
4,642,463	+		GFF4641	0.73	+0.1
4,642,463	+		GFF4641	0.73	-0.0
4,642,463	+		GFF4641	0.73	+1.0
4,642,463	+		GFF4641	0.73	-0.0
4,642,463	+		GFF4641	0.73	-1.8
4,642,463	+		GFF4641	0.73	+0.7
4,642,463	+		GFF4641	0.73	-0.7
4,642,463	+		GFF4641	0.73	-2.2
4,642,463	+		GFF4641	0.73	+0.1
4,642,463	+		GFF4641	0.73	+1.2
4,642,466	-		GFF4641	0.73	+0.4
4,642,468	+		GFF4641	0.74	-0.5
4,642,468	+		GFF4641	0.74	-0.4
4,642,471	-		GFF4641	0.74	-0.8
4,642,471	-		GFF4641	0.74	-1.6
4,642,471	-		GFF4641	0.74	-0.3
4,642,471	-		GFF4641	0.74	-0.4
4,642,471	-		GFF4641	0.74	-0.2
4,642,471	-		GFF4641	0.74	-1.9
4,642,471	-		GFF4641	0.74	-1.9
4,642,476	-		GFF4641	0.75	-1.0
4,642,478	+		GFF4641	0.75	+0.0
4,642,499	+		GFF4641	0.77	-0.8
4,642,499	+		GFF4641	0.77	+0.4
4,642,499	+		GFF4641	0.77	-1.3
4,642,499	+		GFF4641	0.77	-1.5
4,642,499	+		GFF4641	0.77	-0.6
4,642,499	+		GFF4641	0.77	-0.7
4,642,507	-		GFF4641	0.78	-2.6
4,642,507	-		GFF4641	0.78	-0.3
4,642,507	-		GFF4641	0.78	+1.4
4,642,507	-		GFF4641	0.78	-0.9
4,642,507	-		GFF4641	0.78	-1.8
4,642,509	+		GFF4641	0.79	+0.7
4,642,509	+		GFF4641	0.79	-0.7
4,642,509	+		GFF4641	0.79	+0.4
4,642,509	+		GFF4641	0.79	-0.3
4,642,509	+		GFF4641	0.79	-1.9
4,642,514	+		GFF4641	0.79	-0.6
4,642,524	-		GFF4641	0.81	-1.5
4,642,534	-		GFF4641	0.82	-1.4
4,642,537	-		GFF4641	0.82	-1.5
4,642,554	+		GFF4641	0.84	+0.0
4,642,556	+		GFF4641	0.85	-0.5
4,642,569	+		GFF4641	0.86	+0.9
4,642,572	+		GFF4641	0.87	-1.0
4,642,572	+		GFF4641	0.87	-0.5
4,642,591	+		GFF4641	0.89	-0.6
4,642,683	-				-2.0
4,642,688	+				-1.7
4,642,688	-				-1.5
4,642,705	+				-1.0
4,642,705	+				-0.7
4,642,705	+				-1.3
4,642,705	+				-1.7
4,642,705	+				+0.3
4,642,705	+				-0.5
4,642,705	+				+1.6
4,642,705	+				-0.7
4,642,705	+				-1.9
4,642,711	-				-0.3
4,642,711	-				-0.1
4,642,711	-				+0.1
4,642,711	-				-1.3
4,642,713	-				-2.0
4,642,713	-				+0.5
4,642,740	+				-2.1
4,642,780	+		GFF4642	0.19	+1.0
4,642,780	+		GFF4642	0.19	-0.6
4,642,780	+		GFF4642	0.19	+0.9
4,642,780	+		GFF4642	0.19	+0.3
4,642,780	+		GFF4642	0.19	-2.2
4,642,780	+		GFF4642	0.19	-1.8
4,642,781	-		GFF4642	0.19	-1.0
4,642,788	-		GFF4642	0.21	-1.7
4,642,793	-		GFF4642	0.22	+0.9
4,642,827	+		GFF4642	0.31	+0.1
4,642,850	+		GFF4642	0.36	+1.0
4,642,850	+		GFF4642	0.36	-1.8
4,642,863	-		GFF4642	0.40	+0.1
4,642,865	+		GFF4642	0.40	-0.8
4,642,865	+		GFF4642	0.40	-0.1
4,642,865	+		GFF4642	0.40	-0.5
4,642,865	+		GFF4642	0.40	+0.1
4,642,865	+		GFF4642	0.40	-0.8
4,642,865	+		GFF4642	0.40	+1.5
4,642,865	+		GFF4642	0.40	-1.8
4,642,865	+		GFF4642	0.40	-0.6
4,642,865	+		GFF4642	0.40	+0.4
4,642,865	+		GFF4642	0.40	-0.5
4,642,870	+		GFF4642	0.41	-1.5
4,642,870	+		GFF4642	0.41	+0.3
4,642,870	+		GFF4642	0.41	+1.7
4,642,870	+		GFF4642	0.41	+1.2
4,642,871	-		GFF4642	0.42	-0.5
4,642,873	-		GFF4642	0.42	-1.3
4,642,873	-		GFF4642	0.42	-1.8
4,642,873	-		GFF4642	0.42	+0.5
4,642,873	-		GFF4642	0.42	+0.7
4,642,891	+		GFF4642	0.47	+0.3
4,642,897	-		GFF4642	0.48	-1.2
4,642,899	+		GFF4642	0.49	+0.5
4,642,908	+		GFF4642	0.51	+0.5
4,642,908	+		GFF4642	0.51	+0.5
4,642,908	+		GFF4642	0.51	-1.7
4,642,916	-		GFF4642	0.53	-0.7
4,642,916	-		GFF4642	0.53	-1.3
4,642,916	-		GFF4642	0.53	-1.0
4,642,917	-		GFF4642	0.53	-1.5
4,642,918	+		GFF4642	0.54	-1.1
4,642,976	+		GFF4642	0.68	-1.6
4,642,986	+		GFF4642	0.71	-0.5
4,642,986	+		GFF4642	0.71	-0.9
4,642,989	-		GFF4642	0.72	-3.0
4,643,025	-		GFF4642	0.81	+0.2
4,643,029	+		GFF4642	0.82	-1.9
4,643,036	+		GFF4642	0.84	-1.6
4,643,049	+		GFF4642	0.87	+1.1
4,643,058	-		GFF4642	0.89	-1.0
4,643,069	+				-2.0
4,643,092	+				+0.1
4,643,092	+				-0.3
4,643,101	+				-0.3
4,643,101	+				+0.4
4,643,109	-				+0.0
4,643,118	+				-1.5
4,643,130	-				-1.5
4,643,138	-				-1.1
4,643,150	+				-0.2
4,643,158	-				-0.9
4,643,161	+				+1.0
4,643,173	-				-1.2
4,643,173	-				+0.7
4,643,173	-				-0.7
4,643,186	+				-0.3
4,643,194	-				-2.0
4,643,194	-				-2.0
4,643,196	-				+1.6
4,643,215	-				-0.0
4,643,216	+				+0.1
4,643,224	-				+0.3
4,643,260	+				-1.8
4,643,260	+				-1.3
4,643,260	+				-0.5
4,643,260	+				-2.7
4,643,260	+				-2.0
4,643,260	+				+0.7
4,643,260	+				-0.2
4,643,268	-				-0.6
4,643,268	-				+1.1
4,643,268	-				+1.4
4,643,270	+				+0.8
4,643,270	+				+0.1
4,643,270	+				+0.1
4,643,278	-		GFF4643	0.10	-0.0
4,643,278	-		GFF4643	0.10	+0.1
4,643,278	-		GFF4643	0.10	-0.7
4,643,289	-		GFF4643	0.11	-1.6
4,643,320	+		GFF4643	0.15	+0.5
4,643,321	-		GFF4643	0.15	+0.4
4,643,321	-		GFF4643	0.15	+0.1
4,643,321	-		GFF4643	0.15	-1.7
4,643,359	-		GFF4643	0.19	-0.4
4,643,405	+		GFF4643	0.24	-0.5
4,643,405	+		GFF4643	0.24	+0.0
4,643,413	-		GFF4643	0.25	-0.4
4,643,413	-		GFF4643	0.25	-0.1
4,643,418	+		GFF4643	0.26	-0.5
4,643,431	-		GFF4643	0.27	-1.7
4,643,438	+		GFF4643	0.28	-1.0
4,643,438	+		GFF4643	0.28	-0.0
4,643,443	+		GFF4643	0.28	+0.4
4,643,443	+		GFF4643	0.28	+0.3
4,643,446	-		GFF4643	0.29	-0.8
4,643,451	-		GFF4643	0.29	+0.3
4,643,451	-		GFF4643	0.29	-0.5
4,643,480	+		GFF4643	0.32	-0.3
4,643,502	+		GFF4643	0.35	+0.8
4,643,503	-		GFF4643	0.35	+0.4
4,643,531	-		GFF4643	0.38	-0.7
4,643,533	+		GFF4643	0.38	+1.0
4,643,545	+		GFF4643	0.39	+0.9
4,643,546	+		GFF4643	0.40	-0.3
4,643,551	-		GFF4643	0.40	+1.5
4,643,559	+		GFF4643	0.41	-2.3
4,643,626	-		GFF4643	0.48	-0.8
4,643,642	+		GFF4643	0.50	-0.7
4,643,642	+		GFF4643	0.50	+0.2
4,643,642	+		GFF4643	0.50	-0.8
4,643,642	+		GFF4643	0.50	-0.1
4,643,647	+		GFF4643	0.51	-0.3
4,643,650	-		GFF4643	0.51	-0.8
4,643,650	-		GFF4643	0.51	+0.4
4,643,650	-		GFF4643	0.51	+2.2
4,643,650	-		GFF4643	0.51	-1.3
4,643,650	-		GFF4643	0.51	-2.0
4,643,667	+		GFF4643	0.53	+0.5
4,643,748	+		GFF4643	0.62	+0.3
4,643,752	+		GFF4643	0.62	+0.5
4,643,754	-		GFF4643	0.62	+0.3
4,643,764	+		GFF4643	0.64	+0.2
4,643,774	+		GFF4643	0.65	-0.1
4,643,782	-		GFF4643	0.66	-0.1
4,643,814	+		GFF4643	0.69	+1.0
4,643,823	-		GFF4643	0.70	+0.8
4,643,845	-		GFF4643	0.72	+0.5
4,643,845	-		GFF4643	0.72	-0.3
4,643,847	-		GFF4643	0.73	-0.9
4,643,880	+		GFF4643	0.76	-0.0
4,643,893	+		GFF4643	0.78	-1.8
4,643,895	+		GFF4643	0.78	+0.1
4,643,901	-		GFF4643	0.79	-0.8
4,643,901	-		GFF4643	0.79	-0.7
4,643,901	-		GFF4643	0.79	-0.3
4,643,901	-		GFF4643	0.79	-0.5
4,643,903	-		GFF4643	0.79	-2.0
4,643,903	-		GFF4643	0.79	-1.3
4,643,903	-		GFF4643	0.79	-1.4
4,643,924	+		GFF4643	0.81	-0.2
4,643,967	+		GFF4643	0.86	-1.6
4,643,972	+		GFF4643	0.86	-0.1
4,643,972	+		GFF4643	0.86	-1.0
4,643,975	-		GFF4643	0.87	-1.8
4,643,975	-		GFF4643	0.87	-1.3
4,643,980	-		GFF4643	0.87	-0.1
4,643,986	+		GFF4643	0.88	-0.2
4,643,994	-		GFF4643	0.89	-0.8
4,643,994	-		GFF4643	0.89	-1.5
4,644,011	+				-1.0
4,644,024	-				+0.5
4,644,024	-				+0.3
4,644,031	+				-0.0
4,644,031	+				+0.2
4,644,032	+				+0.7
4,644,048	+				+0.1
4,644,056	+				-0.3
4,644,075	+				+0.2
4,644,083	-				+0.2
4,644,083	-				-0.1
4,644,085	+				+0.9
4,644,085	+				-1.0
4,644,085	+				-0.2
4,644,085	+				+0.6
4,644,085	+				+0.1
4,644,093	-				+0.5
4,644,093	-				+0.0
4,644,093	-				-0.5
4,644,093	-				-0.7
4,644,093	-				-0.9
4,644,093	-				+0.0
4,644,093	-				-2.5
4,644,095	+				+0.1
4,644,100	+				-0.6
4,644,105	+				-0.8
4,644,105	+				-2.0
4,644,105	+				-0.5
4,644,113	-				+0.7
4,644,125	+				-0.8
4,644,125	+				-0.3
4,644,130	+				+0.5
4,644,130	+				-1.2
4,644,131	+				-1.6
4,644,138	-				-0.1
4,644,152	+				-1.5
4,644,158	+				-0.3
4,644,207	+				-1.1
4,644,207	+				-1.1
4,644,209	+				-1.5
4,644,215	+				-1.6
4,644,218	-				+0.8
4,644,220	+				+0.6
4,644,220	+				-1.5
4,644,220	+				-1.0
4,644,220	+				+0.3
4,644,220	+				+0.2
4,644,220	+				-1.5
4,644,220	+				-1.1
4,644,220	+				-0.9
4,644,220	+				-1.1
4,644,220	+				+0.4
4,644,220	+				-0.5
4,644,220	+				-0.9
4,644,220	+				+0.3
4,644,223	-				+1.0
4,644,225	+				-2.2
4,644,225	+				+0.8
4,644,225	+				-0.7
4,644,225	+				+0.6
4,644,225	+				+0.4
4,644,225	+				+0.9
4,644,228	-				-0.6
4,644,228	-				-1.0
4,644,228	-				+0.0
4,644,228	-				-0.6
4,644,228	-				-0.6
4,644,228	-				-0.1
4,644,228	-				-0.9
4,644,228	-				-0.8
4,644,228	-				-0.6
4,644,228	-				-0.4
4,644,228	-				+1.0
4,644,228	-				-1.7
4,644,228	-				-0.3
4,644,228	-				+0.0
4,644,228	-				-1.0
4,644,228	-				+0.7
4,644,228	-				-0.9
4,644,230	+				-2.3
4,644,230	+				-0.5
4,644,230	+				-2.3
4,644,230	+				+0.2
4,644,230	+				-0.1
4,644,230	+				-0.7
4,644,230	+				+0.8
4,644,230	+				-0.6
4,644,230	+				-0.9
4,644,230	+				+0.4
4,644,230	+				-0.3
4,644,230	+				-1.1
4,644,230	+				+0.9
4,644,232	+				-1.8
4,644,233	-				-1.5
4,644,233	-				-0.4
4,644,233	-				-0.6
4,644,233	-				-0.3
4,644,233	-				-2.0
4,644,233	-				+0.8
4,644,233	-				-0.9
4,644,233	-				-0.0
4,644,237	+				-0.6
4,644,238	-				-1.2
4,644,238	-				+0.8
4,644,238	-				-0.9
4,644,238	-				+0.5
4,644,238	-				+0.6
4,644,238	-				-0.3
4,644,238	-				+0.4
4,644,238	-				-0.2
4,644,238	-				-1.9
4,644,238	-				+1.1
4,644,238	-				+0.4
4,644,240	-				+1.3
4,644,240	-				-1.6
4,644,240	-				+0.3
4,644,240	-				+0.6
4,644,240	-				+0.5
4,644,240	-				+0.9
4,644,240	-				+0.3
4,644,240	-				-0.0
4,644,242	+				-0.3
4,644,242	+				+1.2
4,644,242	+				-1.2
4,644,242	+				+0.2
4,644,242	+				+0.6
4,644,242	+				-0.6
4,644,242	+				-1.3
4,644,242	+				+0.3
4,644,242	+				+2.3
4,644,247	+				-1.5
4,644,250	-				-0.0
4,644,250	-				-2.4
4,644,250	-				-0.6
4,644,250	-				-1.3
4,644,250	-				-0.5
4,644,264	+				-0.5
4,644,267	-				-0.4
4,644,282	+				+0.5
4,644,282	+				-1.7
4,644,300	-				-1.5
4,644,355	-		GFF4644	0.14	+0.5
4,644,365	+		GFF4644	0.15	-2.1
4,644,365	-		GFF4644	0.15	+0.4
4,644,373	-		GFF4644	0.16	-0.2
4,644,373	-		GFF4644	0.16	-0.1
4,644,399	+		GFF4644	0.19	+0.9
4,644,399	+		GFF4644	0.19	-1.1
4,644,404	+		GFF4644	0.20	-0.5
4,644,405	-		GFF4644	0.20	-0.5
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