Strain Fitness in Sphingobium sp. HT1-2 around GFF462

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF461 and GFF462 are separated by 125 nucleotidesGFF462 and GFF463 overlap by 4 nucleotides GFF461 - Enoyl-CoA hydratase/isomerase, at 460,128 to 461,105 GFF461 GFF462 - Transcriptional regulator, AraC family, at 461,231 to 462,280 GFF462 GFF463 - Glycosyl transferase, group 1 family protein, at 462,277 to 463,374 GFF463 Position (kb) 461 462 463Strain fitness (log2 ratio) -2 -1 0 1 2 3at 460.235 kb on + strand, within GFF461at 460.260 kb on + strand, within GFF461at 460.266 kb on - strand, within GFF461at 460.291 kb on + strand, within GFF461at 460.335 kb on + strand, within GFF461at 460.446 kb on + strand, within GFF461at 460.463 kb on + strand, within GFF461at 460.480 kb on + strand, within GFF461at 460.562 kb on + strand, within GFF461at 460.657 kb on + strand, within GFF461at 460.717 kb on + strand, within GFF461at 460.717 kb on + strand, within GFF461at 460.717 kb on + strand, within GFF461at 460.717 kb on + strand, within GFF461at 460.768 kb on - strand, within GFF461at 460.790 kb on - strand, within GFF461at 460.802 kb on + strand, within GFF461at 460.848 kb on + strand, within GFF461at 460.975 kb on - strand, within GFF461at 460.987 kb on + strand, within GFF461at 460.995 kb on - strand, within GFF461at 460.995 kb on - strand, within GFF461at 460.995 kb on - strand, within GFF461at 460.995 kb on - strand, within GFF461at 461.006 kb on + strand, within GFF461at 461.068 kb on + strandat 461.082 kb on - strandat 461.090 kb on + strandat 461.090 kb on + strandat 461.098 kb on - strandat 461.100 kb on + strandat 461.108 kb on - strandat 461.123 kb on + strandat 461.131 kb on - strandat 461.187 kb on - strandat 461.229 kb on - strandat 461.346 kb on + strand, within GFF462at 461.351 kb on + strand, within GFF462at 461.374 kb on + strand, within GFF462at 461.379 kb on + strand, within GFF462at 461.393 kb on + strand, within GFF462at 461.402 kb on + strand, within GFF462at 461.479 kb on + strand, within GFF462at 461.484 kb on + strand, within GFF462at 461.527 kb on + strand, within GFF462at 461.529 kb on + strand, within GFF462at 461.550 kb on + strand, within GFF462at 461.550 kb on + strand, within GFF462at 461.555 kb on + strand, within GFF462at 461.558 kb on - strand, within GFF462at 461.629 kb on + strand, within GFF462at 461.629 kb on + strand, within GFF462at 461.646 kb on + strand, within GFF462at 461.646 kb on + strand, within GFF462at 461.646 kb on + strand, within GFF462at 461.654 kb on - strand, within GFF462at 461.654 kb on - strand, within GFF462at 461.656 kb on - strand, within GFF462at 461.695 kb on + strand, within GFF462at 461.747 kb on + strand, within GFF462at 461.787 kb on + strand, within GFF462at 461.795 kb on - strand, within GFF462at 461.811 kb on + strand, within GFF462at 461.814 kb on - strand, within GFF462at 461.814 kb on - strand, within GFF462at 461.819 kb on - strand, within GFF462at 461.819 kb on - strand, within GFF462at 461.822 kb on + strand, within GFF462at 461.827 kb on + strand, within GFF462at 461.835 kb on - strand, within GFF462at 461.854 kb on + strand, within GFF462at 461.854 kb on + strand, within GFF462at 461.862 kb on - strand, within GFF462at 461.927 kb on - strand, within GFF462at 461.947 kb on - strand, within GFF462at 461.999 kb on - strand, within GFF462at 462.032 kb on + strand, within GFF462at 462.032 kb on + strand, within GFF462at 462.037 kb on + strand, within GFF462at 462.051 kb on + strand, within GFF462at 462.101 kb on - strand, within GFF462at 462.137 kb on + strand, within GFF462at 462.155 kb on - strand, within GFF462at 462.185 kb on + strandat 462.204 kb on + strandat 462.204 kb on + strandat 462.204 kb on + strandat 462.207 kb on - strandat 462.212 kb on - strandat 462.212 kb on - strandat 462.212 kb on - strandat 462.212 kb on - strandat 462.212 kb on - strandat 462.214 kb on + strandat 462.238 kb on + strandat 462.238 kb on + strandat 462.263 kb on - strandat 462.275 kb on + strandat 462.275 kb on + strandat 462.275 kb on + strandat 462.275 kb on + strandat 462.275 kb on + strandat 462.275 kb on + strandat 462.366 kb on - strandat 462.389 kb on - strand, within GFF463at 462.410 kb on + strand, within GFF463at 462.422 kb on + strand, within GFF463at 462.430 kb on - strand, within GFF463at 462.437 kb on + strand, within GFF463at 462.447 kb on + strand, within GFF463at 462.447 kb on + strand, within GFF463at 462.456 kb on - strand, within GFF463at 462.459 kb on + strand, within GFF463at 462.490 kb on + strand, within GFF463at 462.490 kb on + strand, within GFF463at 462.497 kb on + strand, within GFF463at 462.524 kb on - strand, within GFF463at 462.536 kb on + strand, within GFF463at 462.541 kb on + strand, within GFF463at 462.546 kb on + strand, within GFF463at 462.546 kb on + strand, within GFF463at 462.547 kb on + strand, within GFF463at 462.555 kb on - strand, within GFF463at 462.555 kb on - strand, within GFF463at 462.568 kb on - strand, within GFF463at 462.582 kb on - strand, within GFF463at 462.582 kb on - strand, within GFF463at 462.582 kb on - strand, within GFF463at 462.593 kb on + strand, within GFF463at 462.593 kb on + strand, within GFF463at 462.601 kb on - strand, within GFF463at 462.601 kb on - strand, within GFF463at 462.601 kb on - strand, within GFF463at 462.717 kb on + strand, within GFF463at 462.717 kb on + strand, within GFF463at 462.778 kb on + strand, within GFF463at 462.813 kb on + strand, within GFF463at 462.818 kb on + strand, within GFF463at 462.993 kb on + strand, within GFF463at 462.993 kb on + strand, within GFF463at 462.993 kb on + strand, within GFF463at 462.993 kb on + strand, within GFF463at 462.993 kb on + strand, within GFF463at 462.993 kb on + strand, within GFF463at 462.993 kb on + strand, within GFF463at 463.001 kb on - strand, within GFF463at 463.019 kb on + strand, within GFF463at 463.027 kb on + strand, within GFF463at 463.069 kb on + strand, within GFF463at 463.069 kb on + strand, within GFF463at 463.075 kb on + strand, within GFF463at 463.077 kb on - strand, within GFF463at 463.083 kb on - strand, within GFF463at 463.087 kb on + strand, within GFF463at 463.088 kb on + strand, within GFF463at 463.101 kb on - strand, within GFF463at 463.139 kb on - strand, within GFF463at 463.140 kb on - strand, within GFF463at 463.183 kb on - strand, within GFF463at 463.203 kb on + strand, within GFF463at 463.248 kb on - strand, within GFF463at 463.248 kb on - strand, within GFF463at 463.248 kb on - strand, within GFF463at 463.253 kb on + strand, within GFF463at 463.261 kb on - strand, within GFF463at 463.261 kb on - strand, within GFF463

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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460,235 + GFF461 0.11 -1.4
460,260 + GFF461 0.13 -1.2
460,266 - GFF461 0.14 +0.1
460,291 + GFF461 0.17 +1.3
460,335 + GFF461 0.21 -0.8
460,446 + GFF461 0.33 -0.6
460,463 + GFF461 0.34 -0.6
460,480 + GFF461 0.36 +0.5
460,562 + GFF461 0.44 -0.2
460,657 + GFF461 0.54 +0.1
460,717 + GFF461 0.60 -0.0
460,717 + GFF461 0.60 -0.6
460,717 + GFF461 0.60 +0.2
460,717 + GFF461 0.60 +0.2
460,768 - GFF461 0.65 +1.5
460,790 - GFF461 0.68 +0.0
460,802 + GFF461 0.69 -0.1
460,848 + GFF461 0.74 +0.2
460,975 - GFF461 0.87 +0.6
460,987 + GFF461 0.88 -1.6
460,995 - GFF461 0.89 +0.2
460,995 - GFF461 0.89 +0.6
460,995 - GFF461 0.89 -1.2
460,995 - GFF461 0.89 -0.8
461,006 + GFF461 0.90 -1.2
461,068 + -0.4
461,082 - -0.1
461,090 + +0.4
461,090 + +0.2
461,098 - +0.1
461,100 + -0.2
461,108 - -0.2
461,123 + -0.8
461,131 - -0.1
461,187 - -1.7
461,229 - +0.2
461,346 + GFF462 0.11 -0.2
461,351 + GFF462 0.11 +0.5
461,374 + GFF462 0.14 -0.2
461,379 + GFF462 0.14 -0.6
461,393 + GFF462 0.15 +0.1
461,402 + GFF462 0.16 +0.2
461,479 + GFF462 0.24 +1.0
461,484 + GFF462 0.24 +0.5
461,527 + GFF462 0.28 +0.4
461,529 + GFF462 0.28 +1.4
461,550 + GFF462 0.30 +1.7
461,550 + GFF462 0.30 +0.6
461,555 + GFF462 0.31 -0.6
461,558 - GFF462 0.31 -0.2
461,629 + GFF462 0.38 +0.2
461,629 + GFF462 0.38 +0.5
461,646 + GFF462 0.40 +0.6
461,646 + GFF462 0.40 -0.0
461,646 + GFF462 0.40 -0.8
461,654 - GFF462 0.40 +0.0
461,654 - GFF462 0.40 -0.3
461,656 - GFF462 0.40 +0.1
461,695 + GFF462 0.44 -2.2
461,747 + GFF462 0.49 +1.3
461,787 + GFF462 0.53 -1.0
461,795 - GFF462 0.54 -0.4
461,811 + GFF462 0.55 +0.2
461,814 - GFF462 0.56 +0.6
461,814 - GFF462 0.56 +2.1
461,819 - GFF462 0.56 -0.7
461,819 - GFF462 0.56 +0.6
461,822 + GFF462 0.56 -2.4
461,827 + GFF462 0.57 -0.5
461,835 - GFF462 0.58 -1.8
461,854 + GFF462 0.59 +0.4
461,854 + GFF462 0.59 +0.4
461,862 - GFF462 0.60 -0.1
461,927 - GFF462 0.66 -0.7
461,947 - GFF462 0.68 -0.8
461,999 - GFF462 0.73 -0.3
462,032 + GFF462 0.76 +0.1
462,032 + GFF462 0.76 +0.4
462,037 + GFF462 0.77 -0.2
462,051 + GFF462 0.78 -0.6
462,101 - GFF462 0.83 +1.3
462,137 + GFF462 0.86 +0.4
462,155 - GFF462 0.88 +0.1
462,185 + -0.7
462,204 + -0.6
462,204 + -0.9
462,204 + +1.0
462,207 - +0.9
462,212 - -0.3
462,212 - +0.2
462,212 - -0.2
462,212 - -1.0
462,212 - -2.5
462,214 + +0.8
462,238 + +0.5
462,238 + -0.9
462,263 - -0.0
462,275 + -0.6
462,275 + +0.4
462,275 + -1.0
462,275 + +0.2
462,275 + -1.6
462,275 + +0.5
462,366 - -0.4
462,389 - GFF463 0.10 -0.9
462,410 + GFF463 0.12 +0.2
462,422 + GFF463 0.13 -0.4
462,430 - GFF463 0.14 +0.8
462,437 + GFF463 0.15 -0.6
462,447 + GFF463 0.15 -1.2
462,447 + GFF463 0.15 -0.2
462,456 - GFF463 0.16 -0.8
462,459 + GFF463 0.17 +0.3
462,490 + GFF463 0.19 +0.1
462,490 + GFF463 0.19 +0.5
462,497 + GFF463 0.20 +0.3
462,524 - GFF463 0.22 +0.4
462,536 + GFF463 0.24 -0.0
462,541 + GFF463 0.24 -1.0
462,546 + GFF463 0.24 -0.9
462,546 + GFF463 0.24 -0.0
462,547 + GFF463 0.25 +0.9
462,555 - GFF463 0.25 -0.5
462,555 - GFF463 0.25 -0.5
462,568 - GFF463 0.27 -1.4
462,582 - GFF463 0.28 -0.5
462,582 - GFF463 0.28 +0.4
462,582 - GFF463 0.28 +0.2
462,593 + GFF463 0.29 -0.9
462,593 + GFF463 0.29 -2.0
462,601 - GFF463 0.30 -1.2
462,601 - GFF463 0.30 -2.2
462,601 - GFF463 0.30 -1.9
462,717 + GFF463 0.40 +1.0
462,717 + GFF463 0.40 +0.9
462,778 + GFF463 0.46 +0.6
462,813 + GFF463 0.49 +0.2
462,818 + GFF463 0.49 +0.3
462,993 + GFF463 0.65 -0.8
462,993 + GFF463 0.65 -0.8
462,993 + GFF463 0.65 +0.3
462,993 + GFF463 0.65 +0.1
462,993 + GFF463 0.65 -1.0
462,993 + GFF463 0.65 -1.5
462,993 + GFF463 0.65 -0.1
463,001 - GFF463 0.66 +0.0
463,019 + GFF463 0.68 -1.9
463,027 + GFF463 0.68 -0.5
463,069 + GFF463 0.72 -0.7
463,069 + GFF463 0.72 -0.1
463,075 + GFF463 0.73 +0.5
463,077 - GFF463 0.73 +0.5
463,083 - GFF463 0.73 +1.4
463,087 + GFF463 0.74 -0.1
463,088 + GFF463 0.74 -0.9
463,101 - GFF463 0.75 +1.5
463,139 - GFF463 0.79 -1.5
463,140 - GFF463 0.79 +2.0
463,183 - GFF463 0.83 -0.1
463,203 + GFF463 0.84 +1.4
463,248 - GFF463 0.88 +0.1
463,248 - GFF463 0.88 -2.3
463,248 - GFF463 0.88 -0.7
463,253 + GFF463 0.89 -0.4
463,261 - GFF463 0.90 +2.8
463,261 - GFF463 0.90 -0.4

Or see this region's nucleotide sequence