Strain Fitness in Sphingobium sp. HT1-2 around GFF4618

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,611,954	-		GFF4616	0.83	-1.0
4,611,965	+		GFF4616	0.84	-0.4
4,611,965	-		GFF4616	0.84	+0.5
4,611,973	-		GFF4616	0.84	-0.2
4,611,995	-		GFF4616	0.86	+0.8
4,611,996	-		GFF4616	0.86	-0.7
4,612,002	-		GFF4616	0.87	-2.6
4,612,053	+				-0.4
4,612,061	-				-0.8
4,612,073	+				+0.4
4,612,101	+				-0.3
4,612,124	+				+0.3
4,612,132	-				-0.8
4,612,154	+				-0.1
4,612,168	+				-0.4
4,612,265	+		GFF4617	0.11	-1.2
4,612,273	-		GFF4617	0.12	-0.8
4,612,275	+		GFF4617	0.12	+0.6
4,612,275	-		GFF4617	0.12	-2.1
4,612,296	-		GFF4617	0.15	-0.3
4,612,334	+		GFF4617	0.20	-0.3
4,612,367	-		GFF4617	0.24	+0.1
4,612,409	-		GFF4617	0.30	-1.1
4,612,430	-		GFF4617	0.33	+0.3
4,612,430	-		GFF4617	0.33	-1.5
4,612,430	-		GFF4617	0.33	-0.4
4,612,430	-		GFF4617	0.33	-0.6
4,612,442	+		GFF4617	0.34	+0.5
4,612,446	-		GFF4617	0.35	-0.1
4,612,448	+		GFF4617	0.35	-0.0
4,612,465	-		GFF4617	0.37	-0.1
4,612,498	-		GFF4617	0.41	-2.7
4,612,513	+		GFF4617	0.43	+0.4
4,612,513	+		GFF4617	0.43	-0.2
4,612,521	-		GFF4617	0.44	+0.7
4,612,531	-		GFF4617	0.46	-0.1
4,612,531	-		GFF4617	0.46	+0.5
4,612,531	-		GFF4617	0.46	-0.3
4,612,561	+		GFF4617	0.50	+0.5
4,612,567	-		GFF4617	0.51	+0.4
4,612,580	+		GFF4617	0.52	-2.1
4,612,580	+		GFF4617	0.52	+0.5
4,612,586	-		GFF4617	0.53	-0.7
4,612,588	-		GFF4617	0.53	-2.5
4,612,610	-		GFF4617	0.56	-2.0
4,612,612	-		GFF4617	0.56	-1.1
4,612,670	+		GFF4617	0.64	-0.4
4,612,672	-		GFF4617	0.64	+0.4
4,612,684	+		GFF4617	0.66	+0.7
4,612,684	+		GFF4617	0.66	+0.1
4,612,684	+		GFF4617	0.66	+0.9
4,612,684	+		GFF4617	0.66	-2.3
4,612,692	-		GFF4617	0.67	-0.9
4,612,692	-		GFF4617	0.67	-2.0
4,612,692	-		GFF4617	0.67	+0.7
4,612,692	-		GFF4617	0.67	-1.6
4,612,708	+		GFF4617	0.69	+0.6
4,612,758	-		GFF4617	0.76	+0.1
4,612,778	-		GFF4617	0.78	+1.4
4,612,781	+		GFF4617	0.79	-1.5
4,612,783	-		GFF4617	0.79	+0.9
4,612,824	-		GFF4617	0.84	-0.5
4,612,826	-		GFF4617	0.85	-1.6
4,612,829	-		GFF4617	0.85	+0.2
4,612,843	-		GFF4617	0.87	-2.2
4,612,852	+		GFF4617	0.88	-0.5
4,612,857	-		GFF4617	0.89	+0.2
4,612,890	-				-0.7
4,612,921	-				-2.8
4,612,925	+				-1.4
4,612,932	+				-0.9
4,612,937	+				-0.6
4,612,937	+				-1.5
4,612,945	-				-2.1
4,612,945	-				-3.0
4,612,945	-				-0.6
4,612,945	-				+0.9
4,612,949	+				-0.7
4,612,967	+				-0.4
4,612,991	+				-0.3
4,613,013	-				+0.2
4,613,054	+		GFF4618	0.14	+0.2
4,613,056	+		GFF4618	0.14	+0.7
4,613,085	+		GFF4618	0.18	+0.4
4,613,095	+		GFF4618	0.19	-1.0
4,613,095	+		GFF4618	0.19	+0.4
4,613,100	+		GFF4618	0.20	-0.1
4,613,100	+		GFF4618	0.20	+0.3
4,613,100	+		GFF4618	0.20	-0.8
4,613,100	+		GFF4618	0.20	-0.6
4,613,100	+		GFF4618	0.20	+0.1
4,613,100	+		GFF4618	0.20	-0.4
4,613,105	+		GFF4618	0.20	-0.9
4,613,108	-		GFF4618	0.21	-0.6
4,613,108	-		GFF4618	0.21	+0.6
4,613,123	+		GFF4618	0.23	-0.7
4,613,128	+		GFF4618	0.23	+0.7
4,613,128	+		GFF4618	0.23	-1.5
4,613,128	+		GFF4618	0.23	+1.3
4,613,128	+		GFF4618	0.23	-1.4
4,613,128	+		GFF4618	0.23	-0.6
4,613,128	+		GFF4618	0.23	-1.2
4,613,128	+		GFF4618	0.23	-2.8
4,613,128	+		GFF4618	0.23	-1.6
4,613,136	-		GFF4618	0.24	-1.2
4,613,155	+		GFF4618	0.27	+1.0
4,613,163	+		GFF4618	0.28	+0.8
4,613,163	-		GFF4618	0.28	-1.1
4,613,169	+		GFF4618	0.29	-0.7
4,613,176	+		GFF4618	0.29	-0.1
4,613,176	+		GFF4618	0.29	-1.5
4,613,176	+		GFF4618	0.29	-0.4
4,613,176	+		GFF4618	0.29	-0.4
4,613,176	+		GFF4618	0.29	-0.4
4,613,176	+		GFF4618	0.29	+1.2
4,613,176	+		GFF4618	0.29	-1.0
4,613,176	+		GFF4618	0.29	+0.8
4,613,176	+		GFF4618	0.29	-1.1
4,613,176	+		GFF4618	0.29	+0.1
4,613,176	+		GFF4618	0.29	-1.0
4,613,176	+		GFF4618	0.29	-0.6
4,613,176	+		GFF4618	0.29	-0.4
4,613,176	+		GFF4618	0.29	+0.6
4,613,177	-		GFF4618	0.30	-1.1
4,613,184	-		GFF4618	0.30	-1.1
4,613,184	-		GFF4618	0.30	-0.8
4,613,184	-		GFF4618	0.30	-0.7
4,613,184	-		GFF4618	0.30	+0.8
4,613,207	+		GFF4618	0.33	+0.4
4,613,209	+		GFF4618	0.34	-1.4
4,613,215	-		GFF4618	0.34	-1.1
4,613,242	+		GFF4618	0.38	-0.5
4,613,251	+		GFF4618	0.39	+0.0
4,613,256	+		GFF4618	0.40	+0.7
4,613,279	-		GFF4618	0.42	-0.3
4,613,279	-		GFF4618	0.42	+0.6
4,613,296	-		GFF4618	0.45	-2.5
4,613,308	+		GFF4618	0.46	+0.9
4,613,313	+		GFF4618	0.47	-0.8
4,613,313	+		GFF4618	0.47	-1.6
4,613,315	+		GFF4618	0.47	+1.1
4,613,321	-		GFF4618	0.48	+0.3
4,613,321	-		GFF4618	0.48	+1.6
4,613,321	-		GFF4618	0.48	-0.2
4,613,323	-		GFF4618	0.48	+0.5
4,613,336	+		GFF4618	0.50	-0.1
4,613,336	+		GFF4618	0.50	-1.8
4,613,344	-		GFF4618	0.51	-0.4
4,613,344	-		GFF4618	0.51	+0.5
4,613,347	-		GFF4618	0.51	-2.3
4,613,384	+		GFF4618	0.56	-0.8
4,613,384	+		GFF4618	0.56	-2.3
4,613,409	+		GFF4618	0.59	-0.0
4,613,409	+		GFF4618	0.59	-0.3
4,613,409	+		GFF4618	0.59	+0.2
4,613,409	+		GFF4618	0.59	-0.6
4,613,409	+		GFF4618	0.59	+0.2
4,613,414	+		GFF4618	0.59	-1.5
4,613,414	+		GFF4618	0.59	+0.1
4,613,414	+		GFF4618	0.59	-1.2
4,613,414	+		GFF4618	0.59	-0.1
4,613,414	+		GFF4618	0.59	+1.3
4,613,417	-		GFF4618	0.60	+0.5
4,613,417	-		GFF4618	0.60	-2.1
4,613,417	-		GFF4618	0.60	+1.3
4,613,417	-		GFF4618	0.60	-0.8
4,613,417	-		GFF4618	0.60	-0.7
4,613,417	-		GFF4618	0.60	-0.7
4,613,417	-		GFF4618	0.60	-0.6
4,613,417	-		GFF4618	0.60	-1.7
4,613,417	-		GFF4618	0.60	+1.8
4,613,417	-		GFF4618	0.60	+0.7
4,613,417	-		GFF4618	0.60	-0.4
4,613,419	+		GFF4618	0.60	-0.8
4,613,422	-		GFF4618	0.60	-0.2
4,613,422	-		GFF4618	0.60	+0.5
4,613,455	+		GFF4618	0.65	-1.9
4,613,455	+		GFF4618	0.65	-0.4
4,613,463	-		GFF4618	0.66	-0.7
4,613,508	-		GFF4618	0.71	-2.0
4,613,523	+		GFF4618	0.73	+0.5
4,613,523	+		GFF4618	0.73	-1.5
4,613,530	-		GFF4618	0.74	+0.4
4,613,570	+		GFF4618	0.79	-0.2
4,613,572	+		GFF4618	0.79	-1.7
4,613,582	+		GFF4618	0.81	+0.1
4,613,583	+		GFF4618	0.81	-1.3
4,613,590	-		GFF4618	0.82	-1.0
4,613,624	+		GFF4618	0.86	-0.4
4,613,627	+		GFF4618	0.86	-0.7
4,613,667	+				-0.4
4,613,684	+				-0.4
4,613,686	-				+0.5
4,613,728	+				+0.6
4,613,728	+				-1.2
4,613,728	+				-0.2
4,613,728	+				-0.8
4,613,729	+				+0.2
4,613,729	+				-0.4
4,613,729	+				-1.6
4,613,729	+				-1.5
4,613,736	-				-0.9
4,613,736	-				-0.8
4,613,737	-				-2.9
4,613,737	-				-1.4
4,613,741	+				-0.0
4,613,751	+				+1.3
4,613,753	+				-2.3
4,613,774	+				-0.5
4,613,789	+				-0.7
4,613,808	+				-1.9
4,613,840	-				-0.5
4,613,896	-		GFF4619	0.14	-2.3
4,613,904	+		GFF4619	0.14	-0.7
4,613,912	-		GFF4619	0.15	-1.6
4,613,926	-		GFF4619	0.16	-0.5
4,613,958	+		GFF4619	0.19	-1.8
4,613,958	+		GFF4619	0.19	-0.4
4,613,958	+		GFF4619	0.19	-0.4
4,613,958	+		GFF4619	0.19	-1.2
4,613,958	+		GFF4619	0.19	-1.4
4,613,958	+		GFF4619	0.19	-2.0
4,613,958	+		GFF4619	0.19	-0.1
4,613,966	-		GFF4619	0.20	+0.2
4,613,966	-		GFF4619	0.20	-0.4
4,613,966	-		GFF4619	0.20	-0.9
4,613,966	-		GFF4619	0.20	-0.1
4,613,966	-		GFF4619	0.20	-1.7
4,613,966	-		GFF4619	0.20	+0.5
4,613,966	-		GFF4619	0.20	+0.3
4,613,966	-		GFF4619	0.20	-1.3
4,613,966	-		GFF4619	0.20	-0.3
4,613,966	-		GFF4619	0.20	-1.8
4,613,966	-		GFF4619	0.20	-2.4
4,613,968	+		GFF4619	0.20	-0.4
4,613,968	+		GFF4619	0.20	+1.2
4,613,976	-		GFF4619	0.20	+0.3
4,614,009	+		GFF4619	0.23	-2.7
4,614,012	-		GFF4619	0.24	-1.8
4,614,036	-		GFF4619	0.26	+0.2
4,614,043	+		GFF4619	0.26	+0.2
4,614,060	+		GFF4619	0.28	-0.7
4,614,064	+		GFF4619	0.28	-0.3
4,614,072	-		GFF4619	0.29	-0.9
4,614,073	-		GFF4619	0.29	-0.8
4,614,092	+		GFF4619	0.30	+0.1
4,614,127	+		GFF4619	0.33	-0.2
4,614,146	-		GFF4619	0.35	+0.4
4,614,148	+		GFF4619	0.35	-1.2
4,614,158	-		GFF4619	0.36	+0.6
4,614,163	+		GFF4619	0.37	+0.7
4,614,163	+		GFF4619	0.37	-0.9
4,614,163	+		GFF4619	0.37	-1.4
4,614,170	-		GFF4619	0.37	-0.2
4,614,171	-		GFF4619	0.37	-1.9
4,614,171	-		GFF4619	0.37	+0.4
4,614,171	-		GFF4619	0.37	+0.3
4,614,206	-		GFF4619	0.40	-0.3
4,614,208	+		GFF4619	0.40	-1.6
4,614,208	+		GFF4619	0.40	+1.4
4,614,208	+		GFF4619	0.40	+0.1
4,614,208	+		GFF4619	0.40	+0.7
4,614,216	-		GFF4619	0.41	+0.4
4,614,216	-		GFF4619	0.41	-0.2
4,614,216	-		GFF4619	0.41	-2.2
4,614,216	-		GFF4619	0.41	-0.5
4,614,226	-		GFF4619	0.42	-1.7
4,614,267	+		GFF4619	0.45	-2.1
4,614,267	+		GFF4619	0.45	-1.3
4,614,272	+		GFF4619	0.46	+1.4
4,614,280	-		GFF4619	0.47	-0.1
4,614,294	-		GFF4619	0.48	-1.1
4,614,423	-		GFF4619	0.59	-0.4
4,614,425	+		GFF4619	0.59	-0.4
4,614,431	-		GFF4619	0.60	-0.6
4,614,433	+		GFF4619	0.60	-0.5
4,614,488	+		GFF4619	0.64	-0.8
4,614,497	-		GFF4619	0.65	+0.3
4,614,504	-		GFF4619	0.66	-1.0
4,614,519	+		GFF4619	0.67	+0.1
4,614,546	+		GFF4619	0.69	+0.4
4,614,572	+		GFF4619	0.72	-1.3
4,614,593	+		GFF4619	0.73	+0.2
4,614,597	-		GFF4619	0.74	-0.6
4,614,601	-		GFF4619	0.74	-0.1
4,614,601	-		GFF4619	0.74	+0.7
4,614,610	+		GFF4619	0.75	-0.6
4,614,617	-		GFF4619	0.76	-1.6
4,614,632	+		GFF4619	0.77	-0.4
4,614,648	+		GFF4619	0.78	-0.6
4,614,648	+		GFF4619	0.78	-2.2
4,614,648	+		GFF4619	0.78	-0.3
4,614,656	-		GFF4619	0.79	-0.2
4,614,656	-		GFF4619	0.79	-0.5
4,614,657	+		GFF4619	0.79	-0.9
4,614,657	+		GFF4619	0.79	-0.3
4,614,665	-		GFF4619	0.80	-0.6
4,614,666	-		GFF4619	0.80	-0.6
4,614,675	-		GFF4619	0.80	-0.2
4,614,675	-		GFF4619	0.80	-2.1
4,614,682	-		GFF4619	0.81	-0.8
4,614,689	+		GFF4619	0.82	-0.4
4,614,697	-		GFF4619	0.82	+0.9
4,614,697	-		GFF4619	0.82	-2.1
4,614,699	+		GFF4619	0.83	+0.7
4,614,699	+		GFF4619	0.83	-1.1
4,614,699	+		GFF4619	0.83	-1.6
4,614,699	+		GFF4619	0.83	-0.1
4,614,700	+		GFF4619	0.83	+0.0
4,614,700	+		GFF4619	0.83	-0.3
4,614,707	-		GFF4619	0.83	-0.6
4,614,707	-		GFF4619	0.83	-0.8
4,614,707	-		GFF4619	0.83	-0.1
4,614,714	+		GFF4619	0.84	-0.4
4,614,719	+		GFF4619	0.84	+0.4
4,614,719	+		GFF4619	0.84	-0.7
4,614,722	-		GFF4619	0.85	-0.5
4,614,722	-		GFF4619	0.85	-0.6
4,614,727	-		GFF4619	0.85	-1.8
4,614,729	+		GFF4619	0.85	+1.1
4,614,730	+		GFF4619	0.85	+0.2