Strain Fitness in Sphingobium sp. HT1-2 around GFF4593

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,585,177	-				-1.4
4,585,177	-				+0.7
4,585,182	-				-1.6
4,585,201	-				-1.1
4,585,207	+				-0.6
4,585,207	+				+1.5
4,585,208	+				-1.4
4,585,208	+				-0.7
4,585,213	+				-0.8
4,585,213	+				-0.1
4,585,213	+				-0.4
4,585,213	+				+0.2
4,585,215	-				-1.2
4,585,216	-				-1.4
4,585,216	-				-1.6
4,585,216	-				-0.1
4,585,216	-				-0.4
4,585,226	+				-0.6
4,585,226	+				-1.1
4,585,226	+				-0.5
4,585,226	-				+1.5
4,585,226	-				-0.0
4,585,226	-				+0.6
4,585,234	+				-1.9
4,585,234	-				+1.1
4,585,234	-				-1.5
4,585,236	+				+0.1
4,585,246	+				+1.0
4,585,246	+				-0.1
4,585,246	+				+0.4
4,585,247	+				-0.6
4,585,249	-				-0.5
4,585,252	-				-2.4
4,585,253	-				-0.6
4,585,255	-				-2.8
4,585,255	-				+0.1
4,585,255	-				+0.9
4,585,255	-				-1.2
4,585,265	-				-2.0
4,585,319	-				+0.6
4,585,324	-				+0.7
4,585,330	+				-0.2
4,585,337	+		GFF4592	0.10	+0.3
4,585,353	-		GFF4592	0.13	-0.1
4,585,358	-		GFF4592	0.13	+0.0
4,585,365	+		GFF4592	0.14	-1.0
4,585,374	+		GFF4592	0.15	+0.2
4,585,382	-		GFF4592	0.16	-0.4
4,585,382	-		GFF4592	0.16	+0.3
4,585,382	-		GFF4592	0.16	-0.2
4,585,420	+		GFF4592	0.22	+1.3
4,585,447	-		GFF4592	0.25	-0.1
4,585,465	-		GFF4592	0.28	+0.8
4,585,467	+		GFF4592	0.28	-1.6
4,585,467	+		GFF4592	0.28	+0.8
4,585,471	+		GFF4592	0.28	-1.0
4,585,498	+		GFF4592	0.32	+0.7
4,585,498	+		GFF4592	0.32	-1.2
4,585,511	+		GFF4592	0.34	-0.7
4,585,511	+		GFF4592	0.34	-1.5
4,585,511	+		GFF4592	0.34	-0.4
4,585,519	-		GFF4592	0.35	-1.3
4,585,519	-		GFF4592	0.35	-0.8
4,585,556	-		GFF4592	0.40	-1.3
4,585,581	+		GFF4592	0.43	-0.0
4,585,589	-		GFF4592	0.44	-0.4
4,585,589	-		GFF4592	0.44	-1.6
4,585,608	-		GFF4592	0.47	-1.4
4,585,616	+		GFF4592	0.48	+0.6
4,585,618	+		GFF4592	0.48	+1.5
4,585,624	+		GFF4592	0.49	+0.8
4,585,626	-		GFF4592	0.49	+0.6
4,585,630	+		GFF4592	0.50	-1.7
4,585,630	+		GFF4592	0.50	+0.8
4,585,630	+		GFF4592	0.50	-0.1
4,585,630	+		GFF4592	0.50	-0.8
4,585,631	-		GFF4592	0.50	-0.1
4,585,632	-		GFF4592	0.50	-0.4
4,585,638	-		GFF4592	0.51	+0.9
4,585,638	-		GFF4592	0.51	-0.0
4,585,638	-		GFF4592	0.51	+0.7
4,585,638	-		GFF4592	0.51	-2.0
4,585,640	+		GFF4592	0.51	-1.6
4,585,640	+		GFF4592	0.51	-0.9
4,585,640	+		GFF4592	0.51	-0.8
4,585,648	-		GFF4592	0.52	-0.5
4,585,648	-		GFF4592	0.52	-0.7
4,585,674	+		GFF4592	0.56	+0.1
4,585,682	+		GFF4592	0.57	-0.3
4,585,714	-		GFF4592	0.61	-0.1
4,585,714	-		GFF4592	0.61	+1.1
4,585,735	-		GFF4592	0.64	+0.3
4,585,737	+		GFF4592	0.64	+0.6
4,585,738	+		GFF4592	0.65	-2.1
4,585,738	+		GFF4592	0.65	-0.8
4,585,738	-		GFF4592	0.65	+0.3
4,585,743	+		GFF4592	0.65	-0.3
4,585,743	+		GFF4592	0.65	+0.8
4,585,751	-		GFF4592	0.66	-0.5
4,585,751	-		GFF4592	0.66	-0.5
4,585,751	-		GFF4592	0.66	-0.1
4,585,751	-		GFF4592	0.66	-0.4
4,585,751	-		GFF4592	0.66	-1.1
4,585,753	+		GFF4592	0.67	-0.7
4,585,763	-		GFF4592	0.68	-2.2
4,585,765	-		GFF4592	0.68	-0.9
4,585,779	+		GFF4592	0.70	+0.8
4,585,793	-		GFF4592	0.72	-1.8
4,585,807	-		GFF4592	0.74	-0.3
4,585,826	-		GFF4592	0.76	-0.1
4,585,838	+		GFF4592	0.78	-2.5
4,585,838	+		GFF4592	0.78	+0.5
4,585,838	+		GFF4592	0.78	-0.8
4,585,844	+		GFF4592	0.79	-2.1
4,585,845	+		GFF4592	0.79	+0.0
4,585,845	+		GFF4592	0.79	-1.8
4,585,847	-		GFF4592	0.79	-0.2
4,585,852	-		GFF4592	0.80	-0.5
4,585,852	-		GFF4592	0.80	+1.0
4,585,852	-		GFF4592	0.80	-0.3
4,585,852	-		GFF4592	0.80	-0.1
4,585,853	-		GFF4592	0.80	-0.6
4,585,857	+		GFF4592	0.81	-0.1
4,585,887	-		GFF4592	0.85	+1.1
4,585,889	+		GFF4592	0.85	+0.1
4,585,889	+		GFF4592	0.85	-0.4
4,585,897	-		GFF4592	0.86	+0.4
4,585,897	-		GFF4592	0.86	-1.1
4,585,927	+				-1.6
4,585,927	+				-0.5
4,585,934	+				-1.0
4,585,935	-				-1.1
4,585,935	-				-2.5
4,585,942	+				+0.1
4,585,942	-				-0.5
4,585,975	-				-0.8
4,585,980	-				+0.2
4,585,980	-				-0.0
4,586,047	+				-1.0
4,586,106	+				-0.9
4,586,106	+				-1.7
4,586,108	+				-0.6
4,586,188	-				+0.8
4,586,220	+				-1.9
4,586,228	-				-0.0
4,586,258	-				-1.4
4,586,291	-				-2.5
4,586,293	-				-1.0
4,586,295	+				-3.1
4,586,295	+				+0.9
4,586,295	+				-0.2
4,586,295	+				-0.4
4,586,295	+				+0.2
4,586,295	+				-0.8
4,586,295	+				-2.2
4,586,295	+				-2.0
4,586,295	+				+0.2
4,586,295	+				+0.3
4,586,295	+				-1.3
4,586,295	+				+0.9
4,586,295	+				+0.3
4,586,295	+				-1.4
4,586,295	+				-0.6
4,586,295	+				-0.7
4,586,295	+				-0.9
4,586,295	+				-1.0
4,586,303	-				-0.6
4,586,303	-				-2.1
4,586,303	-				+0.2
4,586,303	-				+0.2
4,586,303	-				-0.4
4,586,303	-				-0.9
4,586,303	-				-0.9
4,586,303	-				-0.5
4,586,303	-				-1.9
4,586,303	-				+0.5
4,586,303	-				+0.5
4,586,303	-				+0.2
4,586,303	-				-0.9
4,586,303	-				-2.4
4,586,312	+		GFF4593	0.11	-1.0
4,586,312	+		GFF4593	0.11	+0.8
4,586,312	+		GFF4593	0.11	+0.3
4,586,317	+		GFF4593	0.11	-3.1
4,586,317	+		GFF4593	0.11	-0.2
4,586,343	+		GFF4593	0.13	-0.2
4,586,343	+		GFF4593	0.13	+0.1
4,586,343	+		GFF4593	0.13	-1.2
4,586,346	+		GFF4593	0.13	-1.2
4,586,351	-		GFF4593	0.14	-0.5
4,586,356	-		GFF4593	0.14	-1.7
4,586,369	-		GFF4593	0.15	-0.5
4,586,375	-		GFF4593	0.16	+0.4
4,586,382	+		GFF4593	0.16	+0.1
4,586,383	-		GFF4593	0.16	-1.9
4,586,384	-		GFF4593	0.16	-1.8
4,586,390	-		GFF4593	0.17	-0.4
4,586,390	-		GFF4593	0.17	-1.9
4,586,398	-		GFF4593	0.17	-1.9
4,586,430	+		GFF4593	0.20	+0.0
4,586,432	-		GFF4593	0.20	+0.2
4,586,432	-		GFF4593	0.20	+0.4
4,586,432	-		GFF4593	0.20	-0.1
4,586,432	-		GFF4593	0.20	-0.4
4,586,432	-		GFF4593	0.20	-0.1
4,586,432	-		GFF4593	0.20	+0.1
4,586,432	-		GFF4593	0.20	-0.1
4,586,452	+		GFF4593	0.22	-1.2
4,586,467	-		GFF4593	0.23	+0.9
4,586,482	+		GFF4593	0.24	+0.2
4,586,482	+		GFF4593	0.24	-0.6
4,586,490	-		GFF4593	0.25	+0.3
4,586,498	+		GFF4593	0.25	-0.5
4,586,507	-		GFF4593	0.26	+0.2
4,586,542	+		GFF4593	0.29	+0.5
4,586,542	+		GFF4593	0.29	-1.2
4,586,542	+		GFF4593	0.29	-2.5
4,586,542	+		GFF4593	0.29	-0.9
4,586,542	+		GFF4593	0.29	-0.5
4,586,550	-		GFF4593	0.29	-1.5
4,586,550	-		GFF4593	0.29	+0.1
4,586,550	-		GFF4593	0.29	+0.2
4,586,550	-		GFF4593	0.29	-0.1
4,586,570	+		GFF4593	0.31	-1.1
4,586,570	+		GFF4593	0.31	-0.8
4,586,578	-		GFF4593	0.31	-2.2
4,586,578	-		GFF4593	0.31	-1.7
4,586,598	+		GFF4593	0.33	-0.6
4,586,598	+		GFF4593	0.33	-0.2
4,586,603	+		GFF4593	0.33	+0.1
4,586,606	-		GFF4593	0.34	-0.2
4,586,606	-		GFF4593	0.34	-0.0
4,586,609	-		GFF4593	0.34	-0.5
4,586,611	-		GFF4593	0.34	-0.6
4,586,622	+		GFF4593	0.35	-0.2
4,586,627	+		GFF4593	0.35	-0.3
4,586,628	+		GFF4593	0.35	-0.2
4,586,630	-		GFF4593	0.35	-1.4
4,586,633	+		GFF4593	0.36	+1.0
4,586,635	-		GFF4593	0.36	-2.6
4,586,651	+		GFF4593	0.37	-0.1
4,586,681	+		GFF4593	0.39	-0.7
4,586,687	-		GFF4593	0.40	-0.4
4,586,709	+		GFF4593	0.42	+1.2
4,586,717	-		GFF4593	0.42	-0.4
4,586,717	-		GFF4593	0.42	+0.9
4,586,729	+		GFF4593	0.43	+0.1
4,586,729	+		GFF4593	0.43	-0.1
4,586,740	+		GFF4593	0.44	-0.3
4,586,747	+		GFF4593	0.45	+0.0
4,586,748	-		GFF4593	0.45	-0.2
4,586,748	-		GFF4593	0.45	-1.2
4,586,774	-		GFF4593	0.47	-1.2
4,586,778	+		GFF4593	0.47	+0.6
4,586,798	-		GFF4593	0.49	+0.1
4,586,798	-		GFF4593	0.49	-2.2
4,586,831	+		GFF4593	0.51	+0.5
4,586,836	+		GFF4593	0.52	-1.4
4,586,836	+		GFF4593	0.52	-0.3
4,586,836	+		GFF4593	0.52	-0.1
4,586,836	+		GFF4593	0.52	-0.3
4,586,836	+		GFF4593	0.52	-0.8
4,586,836	+		GFF4593	0.52	+0.4
4,586,836	+		GFF4593	0.52	+0.4
4,586,836	+		GFF4593	0.52	+0.4
4,586,844	-		GFF4593	0.52	-0.3
4,586,844	-		GFF4593	0.52	-1.2
4,586,844	-		GFF4593	0.52	-2.7
4,586,870	+		GFF4593	0.54	-1.2
4,586,870	-		GFF4593	0.54	-1.0
4,586,903	+		GFF4593	0.57	-0.3
4,586,903	+		GFF4593	0.57	-1.8
4,586,904	-		GFF4593	0.57	+1.0
4,586,911	-		GFF4593	0.57	+0.8
4,586,919	+		GFF4593	0.58	-0.5
4,586,921	-		GFF4593	0.58	-0.4
4,586,945	+		GFF4593	0.60	-2.8
4,586,955	+		GFF4593	0.61	-1.1
4,586,955	+		GFF4593	0.61	-0.8
4,586,963	-		GFF4593	0.61	-0.3
4,586,986	+		GFF4593	0.63	-1.1
4,587,011	-		GFF4593	0.65	-1.2
4,587,014	-		GFF4593	0.65	+0.1
4,587,036	+		GFF4593	0.67	+0.1
4,587,080	+		GFF4593	0.71	-1.9
4,587,087	-		GFF4593	0.71	-1.1
4,587,088	-		GFF4593	0.71	-0.7
4,587,095	+		GFF4593	0.72	-1.4
4,587,095	+		GFF4593	0.72	+0.1
4,587,095	+		GFF4593	0.72	-1.4
4,587,095	+		GFF4593	0.72	-1.0
4,587,103	-		GFF4593	0.72	+1.1
4,587,103	-		GFF4593	0.72	-1.8
4,587,113	-		GFF4593	0.73	-0.6
4,587,115	-		GFF4593	0.73	-0.2
4,587,127	+		GFF4593	0.74	+1.2
4,587,164	+		GFF4593	0.77	-1.2
4,587,164	+		GFF4593	0.77	+0.1
4,587,172	-		GFF4593	0.78	+0.4
4,587,172	-		GFF4593	0.78	-1.8
4,587,178	+		GFF4593	0.78	+0.6
4,587,220	+		GFF4593	0.81	-1.3
4,587,237	+		GFF4593	0.83	+0.2
4,587,237	+		GFF4593	0.83	-1.8
4,587,250	-		GFF4593	0.84	-0.1
4,587,252	+		GFF4593	0.84	-1.4
4,587,260	-		GFF4593	0.85	-0.2
4,587,265	-		GFF4593	0.85	-0.7
4,587,299	+		GFF4593	0.88	-1.2
4,587,307	-		GFF4593	0.88	-0.4
4,587,309	+		GFF4593	0.88	-0.9
4,587,316	+		GFF4593	0.89	-2.1
4,587,317	-		GFF4593	0.89	+0.7
4,587,318	+		GFF4593	0.89	-2.2
4,587,323	+		GFF4593	0.90	-0.2
4,587,346	+				+0.8
4,587,351	+				-2.4
4,587,351	+				+0.6
4,587,351	+				+0.1
4,587,351	+				+0.1
4,587,351	+				+0.1
4,587,352	+				-0.6
4,587,352	+				-0.2
4,587,354	-				-0.4
4,587,354	-				+0.7
4,587,359	-				-1.4
4,587,359	-				+0.0
4,587,359	-				-0.2
4,587,359	-				+0.9
4,587,379	-				-3.1
4,587,381	-				-2.2
4,587,381	-				-0.5
4,587,381	-				-1.1
4,587,381	-				-1.5
4,587,381	-				+0.6
4,587,392	-				-1.5
4,587,398	+				-0.6
4,587,399	+				+0.8
4,587,399	+				-0.5
4,587,407	-				-1.7
4,587,424	-				-0.1
4,587,449	+				-1.2
4,587,449	+				+0.6
4,587,451	+				-0.1
4,587,459	+				-1.9
4,587,508	-				-0.1
4,587,529	+				-0.7
4,587,530	+				-0.4
4,587,545	+				-1.5
4,587,545	+				+1.3
4,587,553	-				-0.5
4,587,558	-				-1.9
4,587,558	-				-1.1
4,587,560	+				+0.5
4,587,562	+				-0.4
4,587,562	+				-0.5
4,587,562	+				-0.1
4,587,568	-				-0.9
4,587,570	+				-0.8
4,587,570	-				-0.6
4,587,570	-				+0.5
4,587,570	-				-2.2
4,587,597	+				-1.0
4,587,597	+				+0.1
4,587,597	+				-0.7
4,587,597	+				-0.9
4,587,597	+				-2.0
4,587,597	+				-0.2
4,587,605	-				-0.3
4,587,605	-				+0.8
4,587,605	-				-0.3
4,587,605	-				-0.8
4,587,619	+				-0.9
4,587,619	+				-0.8
4,587,627	-				+0.6
4,587,628	-				-0.0
4,587,639	+				-0.8
4,587,639	+				-0.6
4,587,649	+				-0.3
4,587,657	-				-1.4
4,587,701	+				-0.2
4,587,701	+				-0.4
4,587,701	+				-0.8
4,587,701	+				-1.5
4,587,701	+				-0.2
4,587,701	+				-1.5
4,587,701	+				-0.2
4,587,709	-				-0.7
4,587,756	+				-0.7
4,587,771	+				-0.9
4,587,771	+				+0.1
4,587,771	+				+0.2
4,587,778	+				+0.1
4,587,779	-				-1.4
4,587,779	-				+0.1
4,587,779	-				-0.1
4,587,791	-				+0.5
4,587,797	+				+0.1
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