Strain Fitness in Sphingobium sp. HT1-2 around GFF4569

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,560,432	-		GFF4568	0.21	-1.3
4,560,432	-		GFF4568	0.21	-0.2
4,560,441	-		GFF4568	0.22	+0.1
4,560,447	+		GFF4568	0.22	-1.2
4,560,458	+		GFF4568	0.23	+0.3
4,560,475	-		GFF4568	0.24	-0.7
4,560,479	+		GFF4568	0.25	-1.8
4,560,479	+		GFF4568	0.25	-0.3
4,560,479	+		GFF4568	0.25	-3.4
4,560,479	+		GFF4568	0.25	-0.1
4,560,479	+		GFF4568	0.25	-0.3
4,560,479	+		GFF4568	0.25	+0.8
4,560,479	+		GFF4568	0.25	-0.1
4,560,479	+		GFF4568	0.25	-0.8
4,560,484	+		GFF4568	0.25	-0.3
4,560,487	-		GFF4568	0.25	-1.4
4,560,487	-		GFF4568	0.25	-2.0
4,560,487	-		GFF4568	0.25	+0.3
4,560,487	-		GFF4568	0.25	-1.9
4,560,487	-		GFF4568	0.25	-0.4
4,560,487	-		GFF4568	0.25	-0.2
4,560,487	-		GFF4568	0.25	+0.3
4,560,489	+		GFF4568	0.26	-2.4
4,560,506	+		GFF4568	0.27	-1.3
4,560,517	+		GFF4568	0.28	-1.2
4,560,517	+		GFF4568	0.28	+0.1
4,560,525	-		GFF4568	0.29	-0.4
4,560,538	+		GFF4568	0.30	-0.4
4,560,538	+		GFF4568	0.30	-0.6
4,560,538	+		GFF4568	0.30	+0.0
4,560,538	+		GFF4568	0.30	+0.8
4,560,538	+		GFF4568	0.30	+0.3
4,560,538	+		GFF4568	0.30	+1.0
4,560,538	+		GFF4568	0.30	-0.3
4,560,538	+		GFF4568	0.30	-1.6
4,560,538	+		GFF4568	0.30	+0.0
4,560,538	+		GFF4568	0.30	+0.0
4,560,538	+		GFF4568	0.30	-0.0
4,560,538	+		GFF4568	0.30	-1.2
4,560,538	+		GFF4568	0.30	-1.8
4,560,538	+		GFF4568	0.30	+0.1
4,560,538	+		GFF4568	0.30	-1.2
4,560,538	+		GFF4568	0.30	-0.3
4,560,538	+		GFF4568	0.30	-0.2
4,560,538	+		GFF4568	0.30	-0.8
4,560,538	+		GFF4568	0.30	-0.1
4,560,538	+		GFF4568	0.30	-1.2
4,560,538	+		GFF4568	0.30	+0.9
4,560,538	+		GFF4568	0.30	-1.1
4,560,538	+		GFF4568	0.30	+0.6
4,560,538	+		GFF4568	0.30	+0.8
4,560,538	+		GFF4568	0.30	-0.6
4,560,538	+		GFF4568	0.30	+0.8
4,560,538	+		GFF4568	0.30	-0.5
4,560,538	+		GFF4568	0.30	+0.1
4,560,538	+		GFF4568	0.30	+0.5
4,560,538	+		GFF4568	0.30	-2.4
4,560,538	+		GFF4568	0.30	+1.0
4,560,538	+		GFF4568	0.30	+0.2
4,560,538	+		GFF4568	0.30	-0.4
4,560,538	+		GFF4568	0.30	+0.2
4,560,538	+		GFF4568	0.30	+0.1
4,560,538	+		GFF4568	0.30	-1.6
4,560,538	+		GFF4568	0.30	+0.3
4,560,544	+		GFF4568	0.30	-1.5
4,560,546	-		GFF4568	0.30	+0.3
4,560,546	-		GFF4568	0.30	-0.1
4,560,546	-		GFF4568	0.30	+0.3
4,560,546	-		GFF4568	0.30	+0.3
4,560,546	-		GFF4568	0.30	+0.3
4,560,546	-		GFF4568	0.30	+1.0
4,560,546	-		GFF4568	0.30	+0.0
4,560,546	-		GFF4568	0.30	-1.5
4,560,546	-		GFF4568	0.30	+0.8
4,560,546	-		GFF4568	0.30	+0.6
4,560,546	-		GFF4568	0.30	+0.2
4,560,546	-		GFF4568	0.30	-0.9
4,560,546	-		GFF4568	0.30	+0.2
4,560,546	-		GFF4568	0.30	+1.3
4,560,546	-		GFF4568	0.30	+0.8
4,560,546	-		GFF4568	0.30	+0.8
4,560,546	-		GFF4568	0.30	+1.5
4,560,546	-		GFF4568	0.30	+0.2
4,560,546	-		GFF4568	0.30	+0.0
4,560,546	-		GFF4568	0.30	+0.0
4,560,546	-		GFF4568	0.30	+0.6
4,560,546	-		GFF4568	0.30	-1.0
4,560,546	-		GFF4568	0.30	-0.4
4,560,546	-		GFF4568	0.30	+0.0
4,560,546	-		GFF4568	0.30	-0.5
4,560,546	-		GFF4568	0.30	-0.6
4,560,546	-		GFF4568	0.30	-1.7
4,560,546	-		GFF4568	0.30	-1.2
4,560,546	-		GFF4568	0.30	-0.8
4,560,549	+		GFF4568	0.31	-0.0
4,560,549	+		GFF4568	0.31	-1.4
4,560,549	+		GFF4568	0.31	+1.3
4,560,549	+		GFF4568	0.31	-0.2
4,560,549	+		GFF4568	0.31	-2.4
4,560,552	+		GFF4568	0.31	+0.3
4,560,557	-		GFF4568	0.31	-2.5
4,560,557	-		GFF4568	0.31	-0.0
4,560,557	-		GFF4568	0.31	+0.4
4,560,557	-		GFF4568	0.31	-2.0
4,560,557	-		GFF4568	0.31	-1.5
4,560,557	-		GFF4568	0.31	-1.7
4,560,559	+		GFF4568	0.31	-2.3
4,560,596	+		GFF4568	0.34	-1.4
4,560,596	+		GFF4568	0.34	+0.8
4,560,604	-		GFF4568	0.35	-1.3
4,560,620	+		GFF4568	0.36	-0.0
4,560,620	+		GFF4568	0.36	-0.0
4,560,626	+		GFF4568	0.37	+0.4
4,560,628	-		GFF4568	0.37	-0.0
4,560,628	-		GFF4568	0.37	+0.1
4,560,628	-		GFF4568	0.37	+0.9
4,560,629	-		GFF4568	0.37	-0.9
4,560,630	+		GFF4568	0.37	+1.6
4,560,630	+		GFF4568	0.37	-1.6
4,560,630	+		GFF4568	0.37	+0.1
4,560,630	+		GFF4568	0.37	-0.6
4,560,630	+		GFF4568	0.37	-0.6
4,560,638	-		GFF4568	0.38	-0.7
4,560,638	-		GFF4568	0.38	-0.2
4,560,638	-		GFF4568	0.38	-0.4
4,560,638	-		GFF4568	0.38	-2.2
4,560,639	+		GFF4568	0.38	-1.6
4,560,643	-		GFF4568	0.38	-1.2
4,560,644	+		GFF4568	0.38	-1.0
4,560,647	-		GFF4568	0.39	-0.8
4,560,651	+		GFF4568	0.39	-0.9
4,560,651	+		GFF4568	0.39	-0.1
4,560,656	+		GFF4568	0.39	-1.2
4,560,656	+		GFF4568	0.39	+0.2
4,560,656	+		GFF4568	0.39	-2.0
4,560,656	+		GFF4568	0.39	+0.1
4,560,656	+		GFF4568	0.39	-1.5
4,560,659	-		GFF4568	0.40	-0.3
4,560,661	+		GFF4568	0.40	+0.1
4,560,661	+		GFF4568	0.40	-0.8
4,560,661	+		GFF4568	0.40	-0.6
4,560,661	+		GFF4568	0.40	-2.2
4,560,661	+		GFF4568	0.40	+1.2
4,560,664	-		GFF4568	0.40	-0.6
4,560,664	-		GFF4568	0.40	-1.2
4,560,664	-		GFF4568	0.40	-2.9
4,560,664	-		GFF4568	0.40	+0.7
4,560,666	+		GFF4568	0.40	-0.2
4,560,666	+		GFF4568	0.40	-0.5
4,560,666	+		GFF4568	0.40	-1.1
4,560,666	+		GFF4568	0.40	-2.8
4,560,666	+		GFF4568	0.40	+0.0
4,560,666	+		GFF4568	0.40	-2.2
4,560,666	+		GFF4568	0.40	-1.0
4,560,666	+		GFF4568	0.40	-0.2
4,560,666	+		GFF4568	0.40	-0.7
4,560,666	+		GFF4568	0.40	-0.5
4,560,669	-		GFF4568	0.40	+0.2
4,560,669	-		GFF4568	0.40	-2.4
4,560,671	+		GFF4568	0.41	+0.5
4,560,671	+		GFF4568	0.41	-0.7
4,560,674	-		GFF4568	0.41	+0.4
4,560,674	-		GFF4568	0.41	-2.0
4,560,674	-		GFF4568	0.41	+0.3
4,560,674	-		GFF4568	0.41	-2.6
4,560,674	-		GFF4568	0.41	-0.5
4,560,674	-		GFF4568	0.41	+0.5
4,560,679	-		GFF4568	0.41	-2.4
4,560,679	-		GFF4568	0.41	-0.4
4,560,692	-		GFF4568	0.42	+0.3
4,560,701	+		GFF4568	0.43	+1.1
4,560,728	-		GFF4568	0.45	-0.1
4,560,736	+		GFF4568	0.46	-1.0
4,560,741	+		GFF4568	0.46	+0.0
4,560,749	-		GFF4568	0.47	+0.8
4,560,754	-		GFF4568	0.47	+0.9
4,560,756	+		GFF4568	0.48	-0.5
4,560,759	+		GFF4568	0.48	-2.4
4,560,763	+		GFF4568	0.48	-1.9
4,560,779	-		GFF4568	0.49	-2.5
4,560,780	+		GFF4568	0.49	+0.2
4,560,788	-		GFF4568	0.50	+0.7
4,560,790	+		GFF4568	0.50	-0.3
4,560,887	+		GFF4568	0.58	-1.7
4,560,902	-		GFF4568	0.59	-0.4
4,560,944	-		GFF4568	0.63	-1.7
4,560,955	+		GFF4568	0.64	-0.4
4,560,955	+		GFF4568	0.64	+0.2
4,560,960	+		GFF4568	0.64	-1.7
4,560,963	-		GFF4568	0.64	+0.6
4,560,963	-		GFF4568	0.64	-1.0
4,560,978	+		GFF4568	0.66	-0.1
4,560,979	-		GFF4568	0.66	-1.1
4,560,986	-		GFF4568	0.66	-0.1
4,560,996	-		GFF4568	0.67	-0.4
4,561,026	-		GFF4568	0.70	-0.4
4,561,037	-		GFF4568	0.71	-1.4
4,561,038	+		GFF4568	0.71	-0.7
4,561,046	-		GFF4568	0.71	-0.4
4,561,046	-		GFF4568	0.71	-0.3
4,561,048	+		GFF4568	0.71	+0.2
4,561,048	+		GFF4568	0.71	-0.3
4,561,049	+		GFF4568	0.71	-1.5
4,561,056	-		GFF4568	0.72	-0.6
4,561,056	-		GFF4568	0.72	-1.5
4,561,056	-		GFF4568	0.72	-2.3
4,561,056	-		GFF4568	0.72	-0.9
4,561,065	+		GFF4568	0.73	+0.6
4,561,073	-		GFF4568	0.73	+0.4
4,561,078	-		GFF4568	0.74	-0.5
4,561,080	+		GFF4568	0.74	-1.4
4,561,080	+		GFF4568	0.74	-0.7
4,561,080	+		GFF4568	0.74	-1.2
4,561,080	+		GFF4568	0.74	-1.2
4,561,098	-		GFF4568	0.76	-0.5
4,561,101	-		GFF4568	0.76	-0.5
4,561,108	+		GFF4568	0.76	-1.9
4,561,133	+		GFF4568	0.78	-1.1
4,561,148	-		GFF4568	0.80	-0.1
4,561,171	+		GFF4568	0.81	-0.6
4,561,171	+		GFF4568	0.81	+0.5
4,561,171	+		GFF4568	0.81	-0.2
4,561,179	-		GFF4568	0.82	+0.1
4,561,185	+		GFF4568	0.83	+0.2
4,561,185	+		GFF4568	0.83	-0.8
4,561,185	+		GFF4568	0.83	-0.0
4,561,193	-		GFF4568	0.83	-1.0
4,561,193	-		GFF4568	0.83	-0.7
4,561,193	-		GFF4568	0.83	-0.0
4,561,193	-		GFF4568	0.83	-0.6
4,561,195	+		GFF4568	0.83	+0.5
4,561,205	+		GFF4568	0.84	-0.8
4,561,205	+		GFF4568	0.84	-0.4
4,561,212	+		GFF4568	0.85	+0.0
4,561,213	-		GFF4568	0.85	+0.7
4,561,222	+		GFF4568	0.86	+0.3
4,561,225	-		GFF4568	0.86	-1.0
4,561,230	-		GFF4568	0.86	+0.3
4,561,240	-		GFF4568	0.87	-0.0
4,561,241	-		GFF4568	0.87	-3.3
4,561,269	+		GFF4568	0.90	-2.0
4,561,288	-				+0.5
4,561,307	+				-0.5
4,561,307	+				-2.1
4,561,307	+				-0.3
4,561,307	+				-1.7
4,561,307	+				-0.6
4,561,307	+				-0.9
4,561,307	+				+1.8
4,561,307	+				+0.1
4,561,307	+				+0.7
4,561,311	-				-0.6
4,561,312	+				-1.5
4,561,315	-				-0.3
4,561,315	-				+1.0
4,561,317	+				-0.3
4,561,317	+				-1.9
4,561,317	+				-1.2
4,561,317	+				-2.0
4,561,317	+				-2.3
4,561,317	+				-0.2
4,561,325	-				+0.0
4,561,325	-				-0.5
4,561,325	-				-0.7
4,561,325	-				+1.5
4,561,335	-				-1.9
4,561,344	-				-0.5
4,561,353	-				+0.7
4,561,367	+				+1.0
4,561,390	+				-0.4
4,561,398	-				-1.3
4,561,429	+				-0.2
4,561,446	+				+0.8
4,561,454	-				-0.3
4,561,455	+				+0.1
4,561,457	+				-0.3
4,561,457	+				+0.6
4,561,457	+				-0.1
4,561,465	+		GFF4569	0.11	+0.1
4,561,465	-		GFF4569	0.11	-1.1
4,561,468	-		GFF4569	0.12	+1.4
4,561,473	-		GFF4569	0.13	-1.5
4,561,495	-		GFF4569	0.17	+0.7
4,561,499	+		GFF4569	0.18	+0.7
4,561,499	+		GFF4569	0.18	-0.2
4,561,500	-		GFF4569	0.18	-0.3
4,561,504	-		GFF4569	0.19	-1.4
4,561,507	-		GFF4569	0.20	-1.4
4,561,507	-		GFF4569	0.20	-0.7
4,561,551	+		GFF4569	0.28	+0.3
4,561,572	+		GFF4569	0.33	-0.5
4,561,572	+		GFF4569	0.33	+1.7
4,561,577	+		GFF4569	0.34	-1.8
4,561,579	+		GFF4569	0.34	-0.6
4,561,580	-		GFF4569	0.34	-0.4
4,561,580	-		GFF4569	0.34	-0.4
4,561,582	+		GFF4569	0.35	-1.7
4,561,582	+		GFF4569	0.35	-0.5
4,561,587	+		GFF4569	0.36	-0.5
4,561,590	-		GFF4569	0.36	-2.2
4,561,596	+		GFF4569	0.38	-0.2
4,561,596	+		GFF4569	0.38	+0.2
4,561,598	+		GFF4569	0.38	-0.4
4,561,598	+		GFF4569	0.38	-2.4
4,561,603	+		GFF4569	0.39	+0.7
4,561,606	-		GFF4569	0.40	-0.7
4,561,646	+		GFF4569	0.48	+0.3
4,561,646	+		GFF4569	0.48	-0.3
4,561,646	+		GFF4569	0.48	-0.9
4,561,654	-		GFF4569	0.49	-1.5
4,561,661	+		GFF4569	0.51	-0.3
4,561,661	+		GFF4569	0.51	-0.6
4,561,661	+		GFF4569	0.51	-1.2
4,561,661	+		GFF4569	0.51	-0.6
4,561,661	+		GFF4569	0.51	+0.9
4,561,661	+		GFF4569	0.51	-0.0
4,561,661	+		GFF4569	0.51	-0.3
4,561,661	+		GFF4569	0.51	-0.6
4,561,661	+		GFF4569	0.51	-0.9
4,561,661	+		GFF4569	0.51	-1.5
4,561,661	+		GFF4569	0.51	-0.1
4,561,668	+		GFF4569	0.52	-0.9
4,561,669	+		GFF4569	0.52	-0.0
4,561,669	-		GFF4569	0.52	+0.6
4,561,669	-		GFF4569	0.52	+0.2
4,561,669	-		GFF4569	0.52	+1.5
4,561,675	-		GFF4569	0.54	-2.2
4,561,676	-		GFF4569	0.54	-0.6
4,561,676	-		GFF4569	0.54	-1.1
4,561,683	+		GFF4569	0.55	-0.4
4,561,711	-		GFF4569	0.61	-0.7
4,561,774	-		GFF4569	0.74	-0.4
4,561,774	-		GFF4569	0.74	-1.1
4,561,775	+		GFF4569	0.74	-0.1
4,561,785	+		GFF4569	0.76	-0.2
4,561,788	-		GFF4569	0.77	-1.1
4,561,804	-		GFF4569	0.80	-0.4
4,561,809	-		GFF4569	0.81	-0.9
4,561,822	+		GFF4569	0.84	+0.5
4,561,863	+				-0.2
4,561,864	+				-1.9
4,561,871	+				-1.7
4,561,872	-				-0.9
4,561,876	+				+1.1
4,561,879	-				+1.1
4,561,881	+				-0.1
4,561,889	-				+1.3
4,561,947	+		GFF4570	0.27	+0.6
4,561,947	+		GFF4570	0.27	-0.6
4,561,950	-		GFF4570	0.29	-0.4
4,561,952	+		GFF4570	0.30	-1.3
4,561,952	+		GFF4570	0.30	-2.2
4,561,954	+		GFF4570	0.31	+0.4
4,561,985	+		GFF4570	0.49	-3.3
4,561,991	+		GFF4570	0.52	-0.6
4,562,007	+		GFF4570	0.61	-1.5
4,562,022	-		GFF4570	0.69	-0.9
4,562,027	-		GFF4570	0.72	-0.0
4,562,050	-		GFF4570	0.85	+0.3
4,562,081	-				+0.1