Strain Fitness in Sphingobium sp. HT1-2 around GFF4415

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,411,747	+		GFF4414	0.30	+0.4
4,411,755	-		GFF4414	0.31	+0.7
4,411,763	+		GFF4414	0.32	-0.1
4,411,769	-		GFF4414	0.32	+0.4
4,411,769	-		GFF4414	0.32	+0.2
4,411,855	+		GFF4414	0.40	-0.8
4,411,855	+		GFF4414	0.40	-0.5
4,411,857	+		GFF4414	0.41	+0.8
4,411,868	+		GFF4414	0.42	-0.3
4,411,890	-		GFF4414	0.44	-0.7
4,411,936	-		GFF4414	0.48	+1.0
4,411,946	+		GFF4414	0.49	+0.6
4,411,949	-		GFF4414	0.49	-0.4
4,411,950	+		GFF4414	0.49	-0.9
4,411,950	+		GFF4414	0.49	-1.3
4,411,967	+		GFF4414	0.51	-1.3
4,411,985	-		GFF4414	0.52	-2.1
4,412,017	+		GFF4414	0.55	-0.8
4,412,017	+		GFF4414	0.55	+0.8
4,412,017	+		GFF4414	0.55	-2.1
4,412,017	+		GFF4414	0.55	-0.1
4,412,017	+		GFF4414	0.55	-1.0
4,412,017	+		GFF4414	0.55	-2.1
4,412,017	+		GFF4414	0.55	+0.3
4,412,017	+		GFF4414	0.55	-1.3
4,412,017	+		GFF4414	0.55	+0.7
4,412,025	-		GFF4414	0.56	-1.7
4,412,025	-		GFF4414	0.56	+0.1
4,412,025	-		GFF4414	0.56	+0.2
4,412,025	-		GFF4414	0.56	-0.8
4,412,025	-		GFF4414	0.56	-1.1
4,412,025	-		GFF4414	0.56	+0.5
4,412,025	-		GFF4414	0.56	-0.5
4,412,026	-		GFF4414	0.56	-1.4
4,412,039	+		GFF4414	0.57	-1.8
4,412,047	-		GFF4414	0.58	-0.9
4,412,076	-		GFF4414	0.61	+0.4
4,412,076	-		GFF4414	0.61	+0.0
4,412,076	-		GFF4414	0.61	+0.1
4,412,080	+		GFF4414	0.61	-0.0
4,412,088	+		GFF4414	0.62	+2.1
4,412,091	-		GFF4414	0.62	+0.2
4,412,095	+		GFF4414	0.63	+0.2
4,412,095	+		GFF4414	0.63	+0.1
4,412,095	+		GFF4414	0.63	-0.4
4,412,103	-		GFF4414	0.63	-0.3
4,412,104	-		GFF4414	0.64	-0.1
4,412,107	+		GFF4414	0.64	+0.8
4,412,107	+		GFF4414	0.64	-0.1
4,412,107	+		GFF4414	0.64	+0.4
4,412,107	+		GFF4414	0.64	-1.6
4,412,110	-		GFF4414	0.64	+0.1
4,412,115	-		GFF4414	0.65	+0.1
4,412,124	+		GFF4414	0.65	+2.1
4,412,139	-		GFF4414	0.67	+2.3
4,412,139	-		GFF4414	0.67	+0.6
4,412,186	+		GFF4414	0.71	-0.2
4,412,191	+		GFF4414	0.72	-1.5
4,412,191	+		GFF4414	0.72	+0.0
4,412,194	-		GFF4414	0.72	-1.2
4,412,199	-		GFF4414	0.72	-1.4
4,412,224	-		GFF4414	0.75	-0.7
4,412,224	-		GFF4414	0.75	+0.2
4,412,224	-		GFF4414	0.75	-0.9
4,412,224	-		GFF4414	0.75	+2.1
4,412,235	+		GFF4414	0.76	-0.2
4,412,235	+		GFF4414	0.76	+0.5
4,412,235	+		GFF4414	0.76	-1.8
4,412,249	+		GFF4414	0.77	+0.3
4,412,254	+		GFF4414	0.77	-1.4
4,412,254	+		GFF4414	0.77	+1.1
4,412,254	+		GFF4414	0.77	+0.3
4,412,254	+		GFF4414	0.77	-0.6
4,412,262	-		GFF4414	0.78	+0.7
4,412,262	-		GFF4414	0.78	+0.3
4,412,262	-		GFF4414	0.78	-0.3
4,412,277	-		GFF4414	0.80	-0.8
4,412,301	+		GFF4414	0.82	-0.5
4,412,301	+		GFF4414	0.82	+0.3
4,412,301	+		GFF4414	0.82	-0.3
4,412,301	+		GFF4414	0.82	+0.3
4,412,301	+		GFF4414	0.82	+0.5
4,412,304	-		GFF4414	0.82	-2.5
4,412,309	-		GFF4414	0.83	+0.7
4,412,309	-		GFF4414	0.83	-0.8
4,412,309	-		GFF4414	0.83	+1.6
4,412,309	-		GFF4414	0.83	-0.9
4,412,309	-		GFF4414	0.83	+0.5
4,412,324	+		GFF4414	0.84	-1.7
4,412,332	-		GFF4414	0.85	+1.0
4,412,332	-		GFF4414	0.85	-0.2
4,412,332	-		GFF4414	0.85	+0.4
4,412,338	-		GFF4414	0.85	-0.6
4,412,344	-		GFF4414	0.86	+0.0
4,412,383	-		GFF4414	0.89	-1.1
4,412,386	-		GFF4414	0.90	+0.4
4,412,388	-		GFF4414	0.90	+0.1
4,412,396	+				+0.1
4,412,406	+				-1.0
4,412,577	+				+0.1
4,412,635	-				-0.8
4,412,730	-				-0.8
4,412,735	-				-0.5
4,412,753	-				+0.0
4,412,753	-				-0.2
4,412,753	-				+0.2
4,412,753	-				-0.4
4,412,764	+		GFF4415	0.14	-0.3
4,412,772	-		GFF4415	0.16	-0.8
4,412,868	-		GFF4415	0.49	-2.1
4,412,870	+		GFF4415	0.50	+0.1
4,412,895	-		GFF4415	0.58	+0.4
4,412,913	-		GFF4415	0.64	+1.5
4,412,939	+		GFF4415	0.73	+0.4
4,412,952	+		GFF4415	0.78	-0.0
4,412,969	+		GFF4415	0.83	-1.1
4,412,974	+		GFF4415	0.85	-0.0
4,412,974	+		GFF4415	0.85	-0.2
4,412,977	-		GFF4415	0.86	+0.5
4,412,979	+		GFF4415	0.87	-0.1
4,412,979	+		GFF4415	0.87	-2.3
4,412,982	-		GFF4415	0.88	-0.7
4,412,982	-		GFF4415	0.88	+0.1
4,412,982	-		GFF4415	0.88	-0.8
4,412,987	-		GFF4415	0.89	-1.2
4,412,987	-		GFF4415	0.89	+2.1
4,412,987	-		GFF4415	0.89	+0.2
4,412,987	-		GFF4415	0.89	-0.6
4,412,987	-		GFF4415	0.89	+0.1
4,412,987	-		GFF4415	0.89	-1.9
4,412,987	-		GFF4415	0.89	-0.5
4,412,987	-		GFF4415	0.89	-0.1
4,412,987	-		GFF4415	0.89	+1.9
4,412,987	-		GFF4415	0.89	-0.7
4,412,987	-		GFF4415	0.89	-0.4
4,412,997	+				-0.7
4,413,005	-				-0.3
4,413,005	-				-2.0
4,413,005	-				+1.9
4,413,005	-				-0.2
4,413,031	+				+0.1
4,413,053	-				-0.1
4,413,054	-				-0.3
4,413,067	-				+0.0
4,413,067	-				-0.9
4,413,067	-				+0.8
4,413,080	+				-0.3
4,413,086	-				-0.4
4,413,119	-				-3.5
4,413,129	-				+1.2
4,413,215	+				+1.7
4,413,222	-				+0.4
4,413,254	-				-0.4
4,413,310	-				-1.1
4,413,313	+				-0.4
4,413,365	+				+1.4
4,413,407	-				+0.0
4,413,410	+				+0.1
4,413,421	+				-1.0
4,413,424	+				+0.4
4,413,429	-				-1.4
4,413,432	-		GFF4416	0.10	+0.5
4,413,432	-		GFF4416	0.10	+0.6
4,413,437	-		GFF4416	0.11	+1.1
4,413,437	-		GFF4416	0.11	+0.4
4,413,454	+		GFF4416	0.16	+1.1
4,413,510	+		GFF4416	0.31	+0.8
4,413,530	+		GFF4416	0.36	+0.6
4,413,573	+		GFF4416	0.48	-0.0
4,413,581	-		GFF4416	0.50	-0.9
4,413,581	-		GFF4416	0.50	+0.1
4,413,581	-		GFF4416	0.50	-0.2
4,413,586	-		GFF4416	0.51	+0.3
4,413,604	+		GFF4416	0.56	+0.2
4,413,658	-		GFF4416	0.70	-0.0
4,413,684	-		GFF4416	0.77	+0.2
4,413,709	+		GFF4416	0.84	+0.3
4,413,710	+		GFF4416	0.84	-0.5
4,413,717	-		GFF4416	0.86	+0.7
4,413,718	-		GFF4416	0.86	-1.2
4,413,718	-		GFF4416	0.86	-0.6
4,413,718	-		GFF4416	0.86	-0.8
4,413,730	+		GFF4416	0.90	+0.2
4,413,763	+				-0.1
4,413,784	+				-0.9
4,413,793	-				-0.3
4,413,805	+				+0.5
4,413,813	-				+0.9
4,413,823	+				+1.1
4,413,823	+				-0.8
4,413,831	-		GFF4417	0.11	-1.9
4,413,846	-		GFF4417	0.13	+1.1
4,413,850	+		GFF4417	0.14	+0.1
4,413,858	-		GFF4417	0.15	+0.5
4,413,858	-		GFF4417	0.15	+0.5
4,413,863	-		GFF4417	0.16	+0.2
4,413,865	-		GFF4417	0.16	+0.5
4,413,870	-		GFF4417	0.17	-0.5
4,413,896	-		GFF4417	0.21	+1.1
4,413,899	-		GFF4417	0.21	-1.0
4,413,920	+		GFF4417	0.25	-0.4
4,413,960	+		GFF4417	0.31	-1.5
4,413,961	+		GFF4417	0.31	+0.3
4,413,974	-		GFF4417	0.33	+0.7
4,413,995	-		GFF4417	0.37	+1.4
4,413,999	+		GFF4417	0.38	-0.9
4,414,004	+		GFF4417	0.38	-0.1
4,414,012	-		GFF4417	0.40	+2.1