Strain Fitness in Sphingobium sp. HT1-2 around GFF4272

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,286,974	-		GFF4270	0.15	-0.6
4,286,975	+		GFF4270	0.16	-1.4
4,286,998	-		GFF4270	0.25	-0.4
4,287,000	-		GFF4270	0.26	-0.1
4,287,010	+		GFF4270	0.30	+0.3
4,287,010	+		GFF4270	0.30	-2.0
4,287,010	+		GFF4270	0.30	-0.0
4,287,012	+		GFF4270	0.31	+0.5
4,287,012	+		GFF4270	0.31	+0.5
4,287,012	+		GFF4270	0.31	+0.7
4,287,012	+		GFF4270	0.31	-1.8
4,287,018	-		GFF4270	0.33	-0.5
4,287,019	-		GFF4270	0.33	-1.0
4,287,020	-		GFF4270	0.34	-0.0
4,287,020	-		GFF4270	0.34	+0.2
4,287,020	-		GFF4270	0.34	+0.6
4,287,020	-		GFF4270	0.34	-0.0
4,287,025	-		GFF4270	0.36	-0.0
4,287,032	-		GFF4270	0.39	-1.4
4,287,042	-		GFF4270	0.43	-1.0
4,287,042	-		GFF4270	0.43	+0.2
4,287,048	-		GFF4270	0.45	-0.3
4,287,048	-		GFF4270	0.45	-1.0
4,287,048	-		GFF4270	0.45	-2.3
4,287,050	+		GFF4270	0.46	+0.5
4,287,050	+		GFF4270	0.46	+0.3
4,287,054	-		GFF4270	0.47	-2.2
4,287,058	-		GFF4270	0.49	-1.3
4,287,066	+		GFF4270	0.52	+0.1
4,287,072	+		GFF4270	0.55	-0.6
4,287,074	-		GFF4270	0.55	+1.3
4,287,074	-		GFF4270	0.55	+0.3
4,287,100	+		GFF4270	0.66	-1.2
4,287,100	+		GFF4270	0.66	+0.6
4,287,100	+		GFF4270	0.66	+0.4
4,287,104	-		GFF4270	0.67	+0.4
4,287,108	-		GFF4270	0.69	-0.8
4,287,108	-		GFF4270	0.69	-1.1
4,287,111	+		GFF4270	0.70	-0.7
4,287,112	+		GFF4270	0.71	-1.3
4,287,149	+		GFF4270	0.86	-0.3
4,287,149	+		GFF4270	0.86	+0.9
4,287,149	+		GFF4270	0.86	+0.8
4,287,149	+		GFF4270	0.86	-3.0
4,287,149	+		GFF4270	0.86	-0.5
4,287,149	+		GFF4270	0.86	-1.0
4,287,157	-		GFF4270	0.89	+0.6
4,287,157	-		GFF4270	0.89	-3.4
4,287,157	-		GFF4270	0.89	-0.2
4,287,163	-				-0.2
4,287,164	+				-0.6
4,287,172	-				-0.9
4,287,205	-				-1.5
4,287,209	+				+0.1
4,287,228	+				-0.7
4,287,228	+				-2.1
4,287,230	+				-0.7
4,287,230	+				+0.2
4,287,238	-				+0.2
4,287,238	-				-0.6
4,287,241	+				-0.3
4,287,246	+				-0.5
4,287,246	+				+0.2
4,287,246	+				-0.3
4,287,246	+				-0.4
4,287,253	-				-0.1
4,287,254	-				+0.1
4,287,254	-				-0.8
4,287,254	-				-1.1
4,287,254	-				+0.2
4,287,254	-				+1.8
4,287,254	-				-0.2
4,287,269	+		GFF4271	0.12	-0.1
4,287,269	+		GFF4271	0.12	-0.6
4,287,277	-		GFF4271	0.13	+0.9
4,287,277	-		GFF4271	0.13	-0.2
4,287,277	-		GFF4271	0.13	+0.8
4,287,277	-		GFF4271	0.13	-0.3
4,287,277	-		GFF4271	0.13	-0.1
4,287,279	+		GFF4271	0.13	-1.4
4,287,279	+		GFF4271	0.13	-0.3
4,287,279	+		GFF4271	0.13	-0.3
4,287,279	+		GFF4271	0.13	+0.3
4,287,287	-		GFF4271	0.14	+0.3
4,287,287	-		GFF4271	0.14	-2.6
4,287,287	-		GFF4271	0.14	-0.4
4,287,287	-		GFF4271	0.14	-0.6
4,287,287	-		GFF4271	0.14	-0.3
4,287,287	-		GFF4271	0.14	+1.2
4,287,304	+		GFF4271	0.16	+0.7
4,287,309	+		GFF4271	0.17	-0.2
4,287,317	-		GFF4271	0.18	-0.8
4,287,350	+		GFF4271	0.22	+0.4
4,287,353	-		GFF4271	0.22	-0.3
4,287,355	+		GFF4271	0.23	-0.1
4,287,358	-		GFF4271	0.23	+0.5
4,287,360	+		GFF4271	0.23	+0.7
4,287,360	+		GFF4271	0.23	-1.8
4,287,360	+		GFF4271	0.23	-1.5
4,287,360	+		GFF4271	0.23	+0.1
4,287,360	+		GFF4271	0.23	-0.4
4,287,363	-		GFF4271	0.24	-0.6
4,287,368	-		GFF4271	0.24	-0.1
4,287,368	-		GFF4271	0.24	-0.6
4,287,368	-		GFF4271	0.24	+0.4
4,287,368	-		GFF4271	0.24	-0.9
4,287,368	-		GFF4271	0.24	+0.3
4,287,368	-		GFF4271	0.24	-0.4
4,287,378	-		GFF4271	0.25	-0.1
4,287,414	+		GFF4271	0.30	+0.7
4,287,415	+		GFF4271	0.30	+1.3
4,287,426	-		GFF4271	0.31	+0.2
4,287,443	+		GFF4271	0.33	-0.6
4,287,452	+		GFF4271	0.35	+0.6
4,287,452	+		GFF4271	0.35	-0.3
4,287,460	-		GFF4271	0.36	-0.7
4,287,469	+		GFF4271	0.37	-0.5
4,287,469	+		GFF4271	0.37	+0.6
4,287,469	+		GFF4271	0.37	-0.0
4,287,474	+		GFF4271	0.37	-0.7
4,287,474	+		GFF4271	0.37	-0.2
4,287,474	+		GFF4271	0.37	-0.2
4,287,474	+		GFF4271	0.37	-1.9
4,287,474	+		GFF4271	0.37	-1.0
4,287,474	+		GFF4271	0.37	-0.4
4,287,474	+		GFF4271	0.37	-1.2
4,287,474	+		GFF4271	0.37	+0.9
4,287,474	+		GFF4271	0.37	+0.0
4,287,474	+		GFF4271	0.37	-1.1
4,287,474	+		GFF4271	0.37	+1.4
4,287,474	+		GFF4271	0.37	-0.4
4,287,474	+		GFF4271	0.37	-2.6
4,287,474	+		GFF4271	0.37	+0.5
4,287,474	+		GFF4271	0.37	-1.9
4,287,477	-		GFF4271	0.38	-1.8
4,287,477	-		GFF4271	0.38	+0.1
4,287,481	+		GFF4271	0.38	+0.3
4,287,482	-		GFF4271	0.38	+0.3
4,287,482	-		GFF4271	0.38	-1.7
4,287,482	-		GFF4271	0.38	-0.3
4,287,482	-		GFF4271	0.38	-1.2
4,287,482	-		GFF4271	0.38	-0.0
4,287,482	-		GFF4271	0.38	+0.2
4,287,482	-		GFF4271	0.38	-1.3
4,287,482	-		GFF4271	0.38	-1.1
4,287,482	-		GFF4271	0.38	-1.2
4,287,482	-		GFF4271	0.38	+0.6
4,287,482	-		GFF4271	0.38	+0.4
4,287,482	-		GFF4271	0.38	+0.2
4,287,482	-		GFF4271	0.38	-1.6
4,287,482	-		GFF4271	0.38	-0.3
4,287,482	-		GFF4271	0.38	-0.4
4,287,482	-		GFF4271	0.38	+0.3
4,287,482	-		GFF4271	0.38	-0.2
4,287,482	-		GFF4271	0.38	-0.6
4,287,482	-		GFF4271	0.38	+0.8
4,287,482	-		GFF4271	0.38	-0.9
4,287,482	-		GFF4271	0.38	-0.4
4,287,482	-		GFF4271	0.38	+1.1
4,287,482	-		GFF4271	0.38	+0.0
4,287,482	-		GFF4271	0.38	-0.1
4,287,482	-		GFF4271	0.38	-0.1
4,287,482	-		GFF4271	0.38	+1.2
4,287,487	-		GFF4271	0.39	+1.2
4,287,496	+		GFF4271	0.40	-0.6
4,287,498	+		GFF4271	0.40	-1.3
4,287,498	+		GFF4271	0.40	-0.3
4,287,498	+		GFF4271	0.40	-0.5
4,287,498	+		GFF4271	0.40	+0.7
4,287,498	+		GFF4271	0.40	+0.4
4,287,498	+		GFF4271	0.40	-2.0
4,287,498	+		GFF4271	0.40	-1.5
4,287,500	-		GFF4271	0.41	+0.7
4,287,503	+		GFF4271	0.41	+0.1
4,287,506	-		GFF4271	0.41	+0.2
4,287,506	-		GFF4271	0.41	+0.8
4,287,506	-		GFF4271	0.41	+1.5
4,287,506	-		GFF4271	0.41	+0.1
4,287,506	-		GFF4271	0.41	+0.0
4,287,511	+		GFF4271	0.42	+0.3
4,287,511	+		GFF4271	0.42	-1.2
4,287,519	-		GFF4271	0.43	+0.3
4,287,523	-		GFF4271	0.43	+1.2
4,287,545	-		GFF4271	0.46	-1.5
4,287,547	+		GFF4271	0.46	+1.4
4,287,548	+		GFF4271	0.47	+1.3
4,287,553	-		GFF4271	0.47	-0.4
4,287,555	-		GFF4271	0.47	+1.3
4,287,566	+		GFF4271	0.49	-1.3
4,287,568	+		GFF4271	0.49	-0.1
4,287,570	-		GFF4271	0.49	+0.5
4,287,576	+		GFF4271	0.50	-0.7
4,287,576	+		GFF4271	0.50	+0.6
4,287,584	-		GFF4271	0.51	-1.3
4,287,584	-		GFF4271	0.51	+0.2
4,287,614	-		GFF4271	0.55	+0.6
4,287,614	-		GFF4271	0.55	-2.5
4,287,624	+		GFF4271	0.56	-0.3
4,287,633	+		GFF4271	0.57	-1.0
4,287,633	-		GFF4271	0.57	+0.1
4,287,635	+		GFF4271	0.57	-0.2
4,287,640	+		GFF4271	0.58	+0.1
4,287,643	+		GFF4271	0.58	+0.6
4,287,643	-		GFF4271	0.58	-0.0
4,287,643	-		GFF4271	0.58	+0.8
4,287,645	-		GFF4271	0.59	+0.0
4,287,649	-		GFF4271	0.59	-1.9
4,287,649	-		GFF4271	0.59	-2.8
4,287,655	+		GFF4271	0.60	-1.0
4,287,660	+		GFF4271	0.60	-0.8
4,287,660	+		GFF4271	0.60	+0.0
4,287,709	+		GFF4271	0.67	-0.7
4,287,724	+		GFF4271	0.68	+1.4
4,287,732	-		GFF4271	0.69	+0.6
4,287,740	+		GFF4271	0.70	-0.9
4,287,752	+		GFF4271	0.72	-0.5
4,287,808	+		GFF4271	0.79	-1.5
4,287,808	+		GFF4271	0.79	-1.5
4,287,808	+		GFF4271	0.79	-0.2
4,287,816	-		GFF4271	0.80	+0.6
4,287,816	-		GFF4271	0.80	+0.1
4,287,826	+		GFF4271	0.81	-2.5
4,287,826	+		GFF4271	0.81	+0.1
4,287,826	+		GFF4271	0.81	-1.1
4,287,834	-		GFF4271	0.82	+0.9
4,287,834	-		GFF4271	0.82	+0.2
4,287,834	-		GFF4271	0.82	+0.9
4,287,860	-		GFF4271	0.85	+0.8
4,287,862	-		GFF4271	0.86	-0.6
4,287,874	+		GFF4271	0.87	-0.3
4,287,892	-		GFF4271	0.89	-0.7
4,287,907	+				+0.2
4,287,908	-				-0.1
4,287,915	-				-0.9
4,287,915	-				+1.9
4,287,919	+				-1.2
4,287,919	+				-1.2
4,287,923	+				-1.0
4,287,924	+				+0.0
4,287,934	+				-0.1
4,287,942	-				-0.7
4,287,944	+				-0.1
4,287,959	+				-0.3
4,287,959	+				-1.9
4,288,018	+		GFF4272	0.21	+0.1
4,288,026	-		GFF4272	0.25	-1.6
4,288,050	-		GFF4272	0.36	-0.6
4,288,051	-		GFF4272	0.37	+0.5
4,288,057	-		GFF4272	0.40	+1.1
4,288,058	-		GFF4272	0.40	-1.9
4,288,067	+		GFF4272	0.44	+0.5
4,288,075	-		GFF4272	0.48	-0.9
4,288,086	+		GFF4272	0.53	-1.4
4,288,092	-		GFF4272	0.56	-0.8
4,288,094	-		GFF4272	0.57	+0.1
4,288,095	-		GFF4272	0.58	-2.1
4,288,100	-		GFF4272	0.60	+0.1
4,288,100	-		GFF4272	0.60	-0.4
4,288,106	+		GFF4272	0.63	-0.7
4,288,113	+		GFF4272	0.66	-0.1
4,288,118	+		GFF4272	0.69	+1.6
4,288,121	-		GFF4272	0.70	+1.7
4,288,126	-		GFF4272	0.72	+0.2
4,288,126	-		GFF4272	0.72	-0.5
4,288,130	+		GFF4272	0.74	-0.1
4,288,139	-		GFF4272	0.79	+0.2
4,288,194	+				+0.0
4,288,194	+				-0.6
4,288,199	+				+0.2
4,288,202	-				-0.1
4,288,205	-				-1.9
4,288,206	+				+0.1
4,288,238	+				+0.6
4,288,248	-		GFF4273	0.11	-0.7
4,288,248	-		GFF4273	0.11	+1.3
4,288,267	+		GFF4273	0.17	+0.6
4,288,267	-		GFF4273	0.17	+0.4
4,288,317	+		GFF4273	0.32	-0.4
4,288,321	+		GFF4273	0.33	-1.2
4,288,321	+		GFF4273	0.33	-0.6
4,288,321	+		GFF4273	0.33	-0.3
4,288,321	+		GFF4273	0.33	-1.7
4,288,325	+		GFF4273	0.34	+0.2
4,288,329	-		GFF4273	0.35	-0.6
4,288,329	-		GFF4273	0.35	-1.3
4,288,329	-		GFF4273	0.35	-1.8
4,288,329	-		GFF4273	0.35	-0.8
4,288,329	-		GFF4273	0.35	-0.0
4,288,337	-		GFF4273	0.38	+0.6
4,288,356	-		GFF4273	0.44	-0.3
4,288,358	-		GFF4273	0.44	-0.4
4,288,398	+		GFF4273	0.56	+1.8
4,288,406	-		GFF4273	0.59	-0.7
4,288,406	-		GFF4273	0.59	-0.5
4,288,409	+		GFF4273	0.60	+0.5
4,288,411	-		GFF4273	0.60	-1.9
4,288,415	+		GFF4273	0.62	-1.7
4,288,417	-		GFF4273	0.62	-0.3
4,288,418	-		GFF4273	0.62	+0.6
4,288,423	-		GFF4273	0.64	-2.5
4,288,437	-		GFF4273	0.68	+0.2
4,288,443	+		GFF4273	0.70	-1.7
4,288,451	-		GFF4273	0.72	-0.5
4,288,474	+		GFF4273	0.79	-1.6
4,288,482	-		GFF4273	0.82	+0.1
4,288,482	-		GFF4273	0.82	+0.4
4,288,484	-		GFF4273	0.82	-0.1
4,288,486	-		GFF4273	0.83	-2.2
4,288,493	+		GFF4273	0.85	-0.4
4,288,503	+		GFF4273	0.88	+0.9
4,288,503	+		GFF4273	0.88	-0.5
4,288,503	+		GFF4273	0.88	+0.5
4,288,503	+		GFF4273	0.88	-0.0
4,288,503	+		GFF4273	0.88	-2.1
4,288,503	+		GFF4273	0.88	-2.2
4,288,503	+		GFF4273	0.88	-0.3
4,288,503	+		GFF4273	0.88	-1.1
4,288,503	+		GFF4273	0.88	-0.8
4,288,503	+		GFF4273	0.88	-0.1
4,288,503	+		GFF4273	0.88	-1.3
4,288,503	+		GFF4273	0.88	+1.6
4,288,503	+		GFF4273	0.88	-0.1
4,288,503	+		GFF4273	0.88	+0.6
4,288,503	+		GFF4273	0.88	+0.1
4,288,503	+		GFF4273	0.88	-1.2
4,288,504	-		GFF4273	0.88	+0.4
4,288,511	-				-0.4
4,288,511	-				+0.5
4,288,511	-				+0.1
4,288,511	-				-0.7
4,288,511	-				-1.1
4,288,511	-				+1.3
4,288,511	-				+0.1
4,288,511	-				-0.1
4,288,511	-				+1.3
4,288,517	-				+0.2
4,288,523	+				-1.1
4,288,523	+				+0.1
4,288,523	+				-1.0
4,288,523	+				-1.3
4,288,529	+				-1.2
4,288,531	-				+0.1
4,288,531	-				-1.0
4,288,537	-				-0.8
4,288,537	-				-1.5
4,288,580	+				-0.6
4,288,581	+				+0.4
4,288,596	-				-2.4
4,288,610	+		GFF4274	0.12	+0.9
4,288,618	-		GFF4274	0.13	+0.8
4,288,618	-		GFF4274	0.13	+0.4
4,288,618	-		GFF4274	0.13	-1.4
4,288,618	-		GFF4274	0.13	+0.3
4,288,620	+		GFF4274	0.13	+1.6
4,288,620	+		GFF4274	0.13	-0.3
4,288,620	+		GFF4274	0.13	+1.2
4,288,620	+		GFF4274	0.13	-0.2
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