Strain Fitness in Sphingobium sp. HT1-2 around GFF4259

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,273,883	-		GFF4257	0.55	-0.5
4,274,055	+				-0.1
4,274,055	+				-0.0
4,274,055	+				-2.0
4,274,055	+				-0.4
4,274,055	+				-0.9
4,274,055	+				-1.6
4,274,055	+				-1.0
4,274,055	+				-2.8
4,274,055	+				+0.2
4,274,055	+				-2.7
4,274,055	+				-1.9
4,274,055	+				-0.5
4,274,055	+				+0.3
4,274,055	+				-0.8
4,274,055	+				+1.4
4,274,055	+				+0.1
4,274,055	+				-1.2
4,274,065	+				+0.0
4,274,091	+				-1.1
4,274,100	-				-1.6
4,274,106	+				+0.1
4,274,146	+				+0.8
4,274,150	-				-0.2
4,274,156	+				-0.1
4,274,156	+				+0.2
4,274,490	-		GFF4258	0.79	+0.6
4,274,518	+		GFF4258	0.88	-0.2
4,274,518	+		GFF4258	0.88	+0.0
4,274,526	-				-0.5
4,274,526	-				+0.6
4,274,535	-				-0.8
4,274,537	-				-2.0
4,274,537	-				+0.8
4,274,552	+				+0.8
4,274,558	+				+0.9
4,274,560	+				-0.5
4,274,566	-				-0.9
4,274,578	+				+0.6
4,274,578	+				-0.5
4,274,578	+				-1.4
4,274,578	+				-0.6
4,274,578	+				-1.4
4,274,578	+				-0.6
4,274,578	+				-0.5
4,274,578	-				+0.1
4,274,584	+				-2.4
4,274,584	-				-1.4
4,274,586	-				-0.6
4,274,586	-				-1.2
4,274,586	-				-1.5
4,274,586	-				+0.6
4,274,612	-				-1.4
4,274,613	+				-0.2
4,274,613	-				-2.0
4,274,613	-				-0.0
4,274,626	+				-2.8
4,274,630	+				+0.2
4,274,630	+				-1.0
4,274,630	+				+1.1
4,274,631	+				-0.9
4,274,636	-				-0.5
4,274,636	-				+1.2
4,274,638	-				-0.4
4,274,639	-				+0.2
4,274,656	-				+0.0
4,274,664	+				-0.7
4,274,674	+				-1.4
4,274,686	+				+1.6
4,274,693	+				-0.4
4,274,694	-				+0.7
4,274,701	-				+0.2
4,274,701	-				-1.1
4,274,718	+				-0.7
4,274,718	+				-1.6
4,274,719	+				-0.7
4,274,727	-				+0.3
4,274,727	-				+1.3
4,274,727	-				-0.4
4,274,727	-				-0.2
4,274,737	+				+0.3
4,274,745	-				-0.3
4,274,745	-				-0.1
4,274,745	-				-0.6
4,274,745	-				-1.1
4,274,752	-				+1.2
4,274,766	+				+0.5
4,274,767	-				-0.7
4,274,774	-				-0.3
4,274,774	-				+0.3
4,274,774	-				-0.1
4,274,774	-				-0.9
4,274,800	-				-1.4
4,274,808	+				-2.3
4,274,808	+				-0.7
4,274,808	+				+1.3
4,274,816	-				+0.1
4,274,816	-				-0.4
4,274,848	+				+0.1
4,274,848	+				-1.4
4,274,851	-				+0.3
4,274,851	-				-0.7
4,274,856	-				-0.7
4,274,856	-				-0.4
4,274,856	-				-0.8
4,274,858	-				-1.8
4,274,878	+				-1.6
4,274,911	-				+0.6
4,274,912	+				+0.1
4,274,912	+				-1.0
4,274,912	+				-1.4
4,274,912	+				+0.4
4,274,912	+				-0.5
4,274,912	+				-0.1
4,274,912	+				-3.2
4,274,912	+				+0.4
4,274,912	+				-3.2
4,274,913	-				+0.2
4,274,913	-				-1.2
4,274,913	-				+1.3
4,274,920	-				-1.2
4,274,920	-				-0.5
4,274,943	-				-1.0
4,274,956	-		GFF4259	0.10	-0.7
4,274,981	-		GFF4259	0.14	-0.8
4,274,988	+		GFF4259	0.14	-0.7
4,275,007	+		GFF4259	0.17	+0.0
4,275,007	+		GFF4259	0.17	-2.1
4,275,007	+		GFF4259	0.17	+0.5
4,275,007	+		GFF4259	0.17	+0.5
4,275,015	-		GFF4259	0.18	+0.4
4,275,017	-		GFF4259	0.18	+0.6
4,275,037	-		GFF4259	0.21	-0.9
4,275,053	+		GFF4259	0.23	-0.4
4,275,053	+		GFF4259	0.23	-0.9
4,275,054	+		GFF4259	0.23	-0.4
4,275,061	-		GFF4259	0.24	-0.9
4,275,061	-		GFF4259	0.24	-0.7
4,275,064	+		GFF4259	0.25	-0.7
4,275,084	-		GFF4259	0.27	-1.6
4,275,087	+		GFF4259	0.28	+0.8
4,275,096	-		GFF4259	0.29	+0.2
4,275,096	-		GFF4259	0.29	-0.2
4,275,098	+		GFF4259	0.29	-1.5
4,275,106	-		GFF4259	0.30	-1.1
4,275,110	+		GFF4259	0.31	+0.3
4,275,120	+		GFF4259	0.32	-0.1
4,275,120	+		GFF4259	0.32	+0.7
4,275,120	+		GFF4259	0.32	+1.7
4,275,120	+		GFF4259	0.32	+0.5
4,275,120	+		GFF4259	0.32	+0.4
4,275,128	-		GFF4259	0.33	+0.3
4,275,128	-		GFF4259	0.33	+0.9
4,275,128	-		GFF4259	0.33	+1.3
4,275,128	-		GFF4259	0.33	-0.4
4,275,128	-		GFF4259	0.33	+0.9
4,275,128	-		GFF4259	0.33	-0.9
4,275,128	-		GFF4259	0.33	-2.7
4,275,128	-		GFF4259	0.33	+0.4
4,275,128	-		GFF4259	0.33	-1.4
4,275,128	-		GFF4259	0.33	-0.2
4,275,149	-		GFF4259	0.36	+0.3
4,275,177	-		GFF4259	0.40	+1.7
4,275,205	+		GFF4259	0.44	+0.5
4,275,205	+		GFF4259	0.44	-0.1
4,275,205	+		GFF4259	0.44	+0.1
4,275,205	+		GFF4259	0.44	+0.4
4,275,205	+		GFF4259	0.44	-0.8
4,275,213	+		GFF4259	0.45	-0.3
4,275,213	-		GFF4259	0.45	+0.3
4,275,213	-		GFF4259	0.45	+0.3
4,275,228	+		GFF4259	0.47	+0.5
4,275,228	+		GFF4259	0.47	-1.1
4,275,228	+		GFF4259	0.47	-1.3
4,275,228	+		GFF4259	0.47	+0.1
4,275,233	+		GFF4259	0.47	-2.3
4,275,233	+		GFF4259	0.47	-0.0
4,275,233	+		GFF4259	0.47	-0.3
4,275,236	-		GFF4259	0.48	+0.6
4,275,236	-		GFF4259	0.48	+0.5
4,275,236	-		GFF4259	0.48	+0.4
4,275,236	-		GFF4259	0.48	+0.4
4,275,238	+		GFF4259	0.48	-0.3
4,275,238	+		GFF4259	0.48	-0.7
4,275,241	-		GFF4259	0.48	-0.6
4,275,246	-		GFF4259	0.49	-0.2
4,275,246	-		GFF4259	0.49	-1.3
4,275,246	-		GFF4259	0.49	-2.8
4,275,246	-		GFF4259	0.49	-0.4
4,275,248	+		GFF4259	0.49	-0.9
4,275,248	+		GFF4259	0.49	-0.7
4,275,251	-		GFF4259	0.50	+0.9
4,275,256	-		GFF4259	0.50	-0.0
4,275,256	-		GFF4259	0.50	-1.5
4,275,256	-		GFF4259	0.50	+0.6
4,275,265	-		GFF4259	0.52	+0.1
4,275,267	+		GFF4259	0.52	+0.5
4,275,290	+		GFF4259	0.55	+0.9
4,275,292	+		GFF4259	0.55	-1.2
4,275,300	-		GFF4259	0.56	+0.1
4,275,303	-		GFF4259	0.57	-0.1
4,275,308	-		GFF4259	0.57	-2.5
4,275,329	+		GFF4259	0.60	-2.7
4,275,344	+		GFF4259	0.62	-0.3
4,275,349	+		GFF4259	0.63	-0.6
4,275,359	+		GFF4259	0.64	-1.6
4,275,361	+		GFF4259	0.64	-1.4
4,275,361	+		GFF4259	0.64	-1.3
4,275,361	+		GFF4259	0.64	-1.3
4,275,369	-		GFF4259	0.65	-0.7
4,275,369	-		GFF4259	0.65	-0.4
4,275,377	+		GFF4259	0.67	+0.3
4,275,385	-		GFF4259	0.68	-0.5
4,275,385	-		GFF4259	0.68	+0.4
4,275,417	+		GFF4259	0.72	-0.4
4,275,430	+		GFF4259	0.74	+0.6
4,275,440	+		GFF4259	0.75	+0.9
4,275,440	+		GFF4259	0.75	-1.6
4,275,440	+		GFF4259	0.75	-1.1
4,275,440	+		GFF4259	0.75	-0.1
4,275,447	+		GFF4259	0.76	-0.3
4,275,447	+		GFF4259	0.76	+1.6
4,275,447	+		GFF4259	0.76	+0.1
4,275,447	+		GFF4259	0.76	+0.8
4,275,448	-		GFF4259	0.76	+0.8
4,275,449	-		GFF4259	0.76	+0.3
4,275,455	-		GFF4259	0.77	-2.0
4,275,455	-		GFF4259	0.77	-1.0
4,275,455	-		GFF4259	0.77	-0.0
4,275,455	-		GFF4259	0.77	+0.4
4,275,460	-		GFF4259	0.78	+0.1
4,275,465	-		GFF4259	0.78	-0.5
4,275,470	-		GFF4259	0.79	+0.4
4,275,475	+		GFF4259	0.80	+0.2
4,275,503	-		GFF4259	0.83	-2.1
4,275,509	+		GFF4259	0.84	+0.5
4,275,517	-		GFF4259	0.85	-2.1
4,275,548	+		GFF4259	0.89	-1.5
4,275,548	+		GFF4259	0.89	-1.0
4,275,556	-				+0.4
4,275,557	+				-0.1
4,275,565	-				+1.8
4,275,565	-				+0.6
4,275,570	-				+2.0
4,275,578	+				+0.3
4,275,590	+				-0.6
4,275,590	+				+0.5
4,275,590	+				+0.2
4,275,590	+				-0.0
4,275,590	+				-2.0
4,275,590	+				-0.6
4,275,590	+				-1.3
4,275,590	+				+0.1
4,275,590	+				+0.5
4,275,595	+				-0.4
4,275,595	+				-1.9
4,275,598	-				-0.1
4,275,598	-				-1.7
4,275,598	-				-2.1
4,275,598	-				-2.5
4,275,598	-				+0.2
4,275,598	-				-0.1
4,275,598	-				-0.2
4,275,598	-				-0.7
4,275,598	-				+0.7
4,275,598	-				-0.7
4,275,598	-				-0.7
4,275,603	-				+0.4
4,275,625	+				-1.9
4,275,632	-				+0.5
4,275,644	-				+0.9
4,275,651	+				+0.4
4,275,654	-				-1.8
4,275,659	-				-0.1
4,275,681	+		GFF4260	0.11	+0.5
4,275,681	+		GFF4260	0.11	-1.6
4,275,681	+		GFF4260	0.11	-1.7
4,275,681	+		GFF4260	0.11	-0.7
4,275,681	+		GFF4260	0.11	-0.4
4,275,681	+		GFF4260	0.11	-1.5
4,275,681	+		GFF4260	0.11	-0.2
4,275,681	+		GFF4260	0.11	-0.7
4,275,681	+		GFF4260	0.11	+0.3
4,275,681	+		GFF4260	0.11	+0.3
4,275,681	+		GFF4260	0.11	+1.2
4,275,681	+		GFF4260	0.11	-0.7
4,275,681	+		GFF4260	0.11	-0.0
4,275,681	+		GFF4260	0.11	+0.0
4,275,681	+		GFF4260	0.11	-1.1
4,275,681	+		GFF4260	0.11	-0.2
4,275,681	+		GFF4260	0.11	+0.1
4,275,681	+		GFF4260	0.11	-0.1
4,275,681	+		GFF4260	0.11	-1.4
4,275,689	-		GFF4260	0.13	-0.5
4,275,689	-		GFF4260	0.13	-0.2
4,275,689	-		GFF4260	0.13	-0.5
4,275,689	-		GFF4260	0.13	-0.7
4,275,689	-		GFF4260	0.13	-0.5
4,275,689	-		GFF4260	0.13	+0.9
4,275,689	-		GFF4260	0.13	+0.4
4,275,689	-		GFF4260	0.13	+0.1
4,275,689	-		GFF4260	0.13	-0.1
4,275,689	-		GFF4260	0.13	+0.4
4,275,689	-		GFF4260	0.13	-0.3
4,275,689	-		GFF4260	0.13	-0.0
4,275,689	-		GFF4260	0.13	+0.3
4,275,689	-		GFF4260	0.13	-0.5
4,275,689	-		GFF4260	0.13	+0.1
4,275,689	-		GFF4260	0.13	-0.6
4,275,689	-		GFF4260	0.13	-0.5
4,275,689	-		GFF4260	0.13	-0.4
4,275,689	-		GFF4260	0.13	+0.0
4,275,689	-		GFF4260	0.13	-0.0
4,275,689	-		GFF4260	0.13	+1.1
4,275,696	+		GFF4260	0.15	-0.1
4,275,699	-		GFF4260	0.16	+0.5
4,275,752	-		GFF4260	0.32	+0.1
4,275,754	+		GFF4260	0.32	+0.6
4,275,754	+		GFF4260	0.32	-0.3
4,275,754	+		GFF4260	0.32	+0.0
4,275,754	+		GFF4260	0.32	-0.9
4,275,759	-		GFF4260	0.34	-0.6
4,275,762	-		GFF4260	0.35	-0.8
4,275,762	-		GFF4260	0.35	-0.2
4,275,762	-		GFF4260	0.35	+0.8
4,275,769	+		GFF4260	0.37	+1.3
4,275,772	+		GFF4260	0.38	-0.2
4,275,772	-		GFF4260	0.38	-1.6
4,275,778	+		GFF4260	0.40	-0.2
4,275,778	+		GFF4260	0.40	+0.2
4,275,779	+		GFF4260	0.40	-0.2
4,275,779	+		GFF4260	0.40	+0.8
4,275,779	+		GFF4260	0.40	-0.6
4,275,787	-		GFF4260	0.42	-2.2
4,275,813	+		GFF4260	0.50	+0.3
4,275,814	+		GFF4260	0.50	-0.6
4,275,814	+		GFF4260	0.50	-2.4
4,275,814	-		GFF4260	0.50	+0.6
4,275,822	-		GFF4260	0.53	+0.4
4,275,822	-		GFF4260	0.53	-0.3
4,275,836	+		GFF4260	0.57	+0.4
4,275,836	+		GFF4260	0.57	+0.6
4,275,841	+		GFF4260	0.58	+0.1
4,275,842	+		GFF4260	0.58	+0.5
4,275,849	-		GFF4260	0.60	-1.0
4,275,887	+		GFF4260	0.72	-1.6
4,275,898	+		GFF4260	0.75	-1.6
4,275,901	+		GFF4260	0.76	+0.1
4,275,901	+		GFF4260	0.76	-0.2
4,275,901	+		GFF4260	0.76	-0.3
4,275,901	+		GFF4260	0.76	-1.8
4,275,901	+		GFF4260	0.76	-1.2
4,275,904	+		GFF4260	0.77	+0.1
4,275,909	-		GFF4260	0.78	-0.3
4,275,909	-		GFF4260	0.78	+0.5
4,275,910	-		GFF4260	0.78	-1.4
4,275,920	+		GFF4260	0.81	+0.5
4,275,931	-		GFF4260	0.85	-1.5
4,275,938	+		GFF4260	0.87	-0.1
4,275,945	+		GFF4260	0.89	-0.4
4,275,971	+				-0.0
4,275,971	+				+0.0
4,275,971	+				-0.5
4,275,971	+				-0.1
4,275,979	-				-1.7
4,275,979	-				-1.5
4,275,979	-				-0.7
4,275,981	+				+0.1
4,275,981	+				+0.4
4,275,986	+				+0.3
4,275,996	+				-1.9
4,275,996	+				+0.2
4,276,004	-				+0.1
4,276,004	-				+0.6
4,276,011	+				-1.3
4,276,019	-				-0.4
4,276,019	-				-0.8
4,276,022	+				-0.9
4,276,028	+				+1.4
4,276,028	+				-0.1
4,276,041	-				-0.0
4,276,065	-				-0.2
4,276,076	+				+0.9
4,276,099	-				-0.9
4,276,117	+				+0.4
4,276,117	+				-0.9
4,276,117	+				-0.0
4,276,117	+				-2.8
4,276,117	+				-0.6
4,276,117	+				+0.1
4,276,144	-				-1.1
4,276,144	-				-1.0
4,276,188	+				+0.5
4,276,196	-				+0.3
4,276,238	+				+0.3
4,276,271	-				+0.0
4,276,276	-				+0.2
4,276,281	+				+0.1
4,276,290	+				+0.4
4,276,290	+				-2.8
4,276,298	-				-0.5
4,276,299	-				-0.8
4,276,315	-				+0.3
4,276,350	-				+0.3
4,276,351	-				+0.9
4,276,353	+				+0.1
4,276,353	+				-0.7
4,276,353	+				+0.2
4,276,361	-				-1.1
4,276,361	-				-1.5
4,276,361	-				-1.6
4,276,361	-				-0.9
4,276,368	+				-0.4
4,276,368	+				-0.2
4,276,368	+				-0.3
4,276,387	+				-0.3
4,276,387	+				+0.1
4,276,391	-				-1.9
4,276,489	-				-1.5
4,276,495	+				-1.3
4,276,503	-				+0.8
4,276,536	+		GFF4261	0.15	-1.9
4,276,538	-		GFF4261	0.15	-0.4
4,276,539	-		GFF4261	0.16	-0.6
4,276,548	+		GFF4261	0.17	-0.1
4,276,561	+		GFF4261	0.19	+1.1
4,276,561	+		GFF4261	0.19	-0.3
4,276,561	+		GFF4261	0.19	-1.6
4,276,569	-		GFF4261	0.21	+0.1
4,276,569	-		GFF4261	0.21	+1.1
4,276,598	-		GFF4261	0.26	+0.1
4,276,598	-		GFF4261	0.26	+0.1