Strain Fitness in Sphingobium sp. HT1-2 around GFF4246

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,265,236	+		GFF4244	0.71	-2.5
4,265,236	+		GFF4244	0.71	+0.0
4,265,236	+		GFF4244	0.71	-0.6
4,265,241	+		GFF4244	0.72	-1.6
4,265,244	-		GFF4244	0.72	-0.2
4,265,244	-		GFF4244	0.72	+0.1
4,265,254	-		GFF4244	0.73	+0.2
4,265,254	-		GFF4244	0.73	+0.0
4,265,267	+		GFF4244	0.74	-0.4
4,265,291	+		GFF4244	0.76	+0.3
4,265,299	-		GFF4244	0.76	-0.6
4,265,299	-		GFF4244	0.76	-1.4
4,265,299	-		GFF4244	0.76	+1.0
4,265,299	-		GFF4244	0.76	+0.2
4,265,299	-		GFF4244	0.76	-0.6
4,265,299	-		GFF4244	0.76	+0.0
4,265,304	-		GFF4244	0.76	-0.5
4,265,315	+		GFF4244	0.77	-1.7
4,265,322	-		GFF4244	0.78	+0.0
4,265,361	+		GFF4244	0.81	-0.8
4,265,392	+		GFF4244	0.83	-0.8
4,265,400	+		GFF4244	0.84	-1.4
4,265,413	+		GFF4244	0.85	+0.2
4,265,433	+		GFF4244	0.86	+0.5
4,265,433	+		GFF4244	0.86	-1.2
4,265,441	-		GFF4244	0.87	+0.9
4,265,456	+		GFF4244	0.88	-1.1
4,265,461	+		GFF4244	0.88	+1.8
4,265,464	-		GFF4244	0.88	-1.4
4,265,466	+		GFF4244	0.88	-1.4
4,265,472	+		GFF4244	0.89	-0.0
4,265,472	+		GFF4244	0.89	+0.7
4,265,479	-		GFF4244	0.89	+1.2
4,265,480	-		GFF4244	0.90	-0.1
4,265,480	-		GFF4244	0.90	+0.8
4,265,493	-				+0.5
4,265,571	+				-0.3
4,265,571	+				-0.3
4,265,588	+				-0.5
4,265,588	+				-0.1
4,265,588	+				-0.7
4,265,619	-				+0.4
4,265,636	+				+0.1
4,265,644	-				-2.7
4,265,644	-				-0.5
4,265,686	+				-0.4
4,265,688	-				-1.4
4,265,692	+				-0.8
4,265,692	+				-0.6
4,265,692	+				-0.3
4,265,700	-				-0.3
4,265,700	-				-0.8
4,265,700	-				+0.1
4,265,700	-				+0.2
4,265,783	-				-0.2
4,265,788	+				-1.4
4,265,789	+				+0.3
4,265,791	+				-0.7
4,265,796	-				-1.4
4,265,813	+				-1.0
4,265,818	+				-0.1
4,265,831	-				-1.6
4,265,835	+		GFF4245	0.11	+0.7
4,265,840	+		GFF4245	0.12	+0.1
4,265,841	-		GFF4245	0.12	+1.4
4,265,853	-		GFF4245	0.16	-0.8
4,265,854	-		GFF4245	0.16	+0.7
4,265,868	-		GFF4245	0.20	-0.4
4,265,868	-		GFF4245	0.20	+1.0
4,265,882	+		GFF4245	0.24	+0.1
4,265,887	+		GFF4245	0.25	-1.9
4,265,889	+		GFF4245	0.26	-0.5
4,265,890	+		GFF4245	0.26	+0.4
4,265,890	-		GFF4245	0.26	+0.3
4,265,895	-		GFF4245	0.27	-0.2
4,265,895	-		GFF4245	0.27	+0.6
4,265,897	-		GFF4245	0.28	-2.1
4,265,897	-		GFF4245	0.28	+1.1
4,265,905	+		GFF4245	0.30	-0.2
4,265,905	+		GFF4245	0.30	+0.3
4,265,905	+		GFF4245	0.30	-2.4
4,265,905	+		GFF4245	0.30	-0.4
4,265,913	+		GFF4245	0.32	+1.3
4,265,913	-		GFF4245	0.32	-2.1
4,265,913	-		GFF4245	0.32	+0.8
4,265,918	+		GFF4245	0.34	-0.1
4,265,952	+		GFF4245	0.43	-0.4
4,265,957	-		GFF4245	0.45	-1.7
4,265,973	+		GFF4245	0.49	-0.3
4,265,982	+		GFF4245	0.52	-1.2
4,265,993	+		GFF4245	0.55	+0.1
4,266,009	-		GFF4245	0.59	+0.1
4,266,030	+		GFF4245	0.65	-0.4
4,266,094	-		GFF4245	0.83	+0.4
4,266,104	-		GFF4245	0.86	+0.1
4,266,115	+		GFF4245	0.89	-1.4
4,266,115	+		GFF4245	0.89	+1.2
4,266,123	-				-2.7
4,266,123	-				-0.2
4,266,128	+				+0.5
4,266,131	-				+0.1
4,266,175	-				-1.9
4,266,190	-				-0.4
4,266,193	+				-0.6
4,266,193	+				-0.0
4,266,193	+				-0.1
4,266,193	+				-2.6
4,266,201	-				-2.1
4,266,201	-				-0.5
4,266,201	-				-0.2
4,266,201	-				-0.7
4,266,201	-				+0.1
4,266,222	+				-1.2
4,266,229	+				-0.8
4,266,230	+				-0.0
4,266,230	+				+0.0
4,266,230	+				+1.5
4,266,230	+				+1.3
4,266,230	+				-0.5
4,266,230	+				-1.6
4,266,238	-		GFF4246	0.12	+0.2
4,266,238	-		GFF4246	0.12	+0.1
4,266,238	-		GFF4246	0.12	-0.9
4,266,238	-		GFF4246	0.12	-1.0
4,266,238	-		GFF4246	0.12	-0.5
4,266,238	-		GFF4246	0.12	-0.2
4,266,262	+		GFF4246	0.18	+0.2
4,266,262	+		GFF4246	0.18	-0.2
4,266,262	+		GFF4246	0.18	+0.3
4,266,280	-		GFF4246	0.23	+0.6
4,266,292	+		GFF4246	0.27	-0.6
4,266,300	-		GFF4246	0.29	-0.1
4,266,311	-		GFF4246	0.32	-0.8
4,266,340	-		GFF4246	0.40	-0.2
4,266,351	+		GFF4246	0.43	-2.7
4,266,351	+		GFF4246	0.43	-0.4
4,266,351	+		GFF4246	0.43	+1.2
4,266,351	+		GFF4246	0.43	-0.4
4,266,359	-		GFF4246	0.45	+0.4
4,266,360	+		GFF4246	0.46	+0.8
4,266,360	+		GFF4246	0.46	+0.6
4,266,360	+		GFF4246	0.46	+1.0
4,266,360	+		GFF4246	0.46	+0.6
4,266,360	+		GFF4246	0.46	+0.8
4,266,360	+		GFF4246	0.46	-0.5
4,266,361	-		GFF4246	0.46	-0.0
4,266,362	+		GFF4246	0.46	+0.2
4,266,364	-		GFF4246	0.47	+0.7
4,266,367	+		GFF4246	0.47	+0.6
4,266,368	-		GFF4246	0.48	+0.1
4,266,368	-		GFF4246	0.48	-0.7
4,266,368	-		GFF4246	0.48	+0.7
4,266,368	-		GFF4246	0.48	-1.2
4,266,368	-		GFF4246	0.48	-0.1
4,266,368	-		GFF4246	0.48	-0.5
4,266,368	-		GFF4246	0.48	+1.1
4,266,370	+		GFF4246	0.48	-0.5
4,266,375	-		GFF4246	0.50	-0.2
4,266,383	+		GFF4246	0.52	+0.4
4,266,391	-		GFF4246	0.54	+0.5
4,266,395	+		GFF4246	0.55	-0.5
4,266,427	-		GFF4246	0.64	-0.7
4,266,427	-		GFF4246	0.64	-0.4
4,266,474	+		GFF4246	0.77	+0.5
4,266,475	+		GFF4246	0.78	-0.6
4,266,505	-		GFF4246	0.86	-0.4
4,266,511	+		GFF4246	0.88	+0.2
4,266,530	+				-0.2
4,266,530	+				-0.2
4,266,530	+				-2.1
4,266,547	+				-0.4
4,266,547	+				-1.8
4,266,547	+				-1.2
4,266,555	-				+1.3
4,266,576	-				-2.3
4,266,581	-				-0.6
4,266,586	-				+0.5
4,266,595	+				+0.9
4,266,595	+				+0.0
4,266,603	-				-0.1
4,266,608	-				-0.6
4,266,608	-				+0.6
4,266,613	+				-0.1
4,266,613	+				+0.2
4,266,613	+				+0.7
4,266,623	+				-0.0
4,266,623	+				-0.9
4,266,623	+				-1.9
4,266,623	-				-0.7
4,266,623	-				-1.3
4,266,623	-				-1.1
4,266,631	-				-0.2
4,266,631	-				-0.6
4,266,631	-				-1.0
4,266,631	-				-0.9
4,266,633	+				-0.1
4,266,633	+				-0.5
4,266,633	+				-0.3
4,266,633	+				-2.1
4,266,638	+				-0.8
4,266,641	-				+1.0
4,266,641	-				-0.5
4,266,641	-				-0.6
4,266,641	-				-0.2
4,266,641	-				+0.5
4,266,641	-				+0.2
4,266,672	+		GFF4247	0.12	+0.3
4,266,691	+		GFF4247	0.14	+0.4
4,266,692	+		GFF4247	0.14	-1.1
4,266,692	-		GFF4247	0.14	+0.2
4,266,699	-		GFF4247	0.14	+0.7
4,266,699	-		GFF4247	0.14	+0.0
4,266,705	+		GFF4247	0.15	-0.4
4,266,706	+		GFF4247	0.15	+1.1
4,266,711	+		GFF4247	0.15	-2.3
4,266,759	+		GFF4247	0.20	+0.2
4,266,759	+		GFF4247	0.20	+0.1
4,266,759	+		GFF4247	0.20	+0.5
4,266,759	+		GFF4247	0.20	-1.7
4,266,759	+		GFF4247	0.20	-0.4
4,266,759	+		GFF4247	0.20	+0.4
4,266,759	+		GFF4247	0.20	-0.9
4,266,764	+		GFF4247	0.21	+1.1
4,266,766	+		GFF4247	0.21	-1.3
4,266,767	-		GFF4247	0.21	-1.3
4,266,767	-		GFF4247	0.21	+1.0
4,266,767	-		GFF4247	0.21	-0.6
4,266,767	-		GFF4247	0.21	-1.3
4,266,774	-		GFF4247	0.22	-0.7
4,266,774	-		GFF4247	0.22	-1.2
4,266,774	-		GFF4247	0.22	+0.3
4,266,797	-		GFF4247	0.24	+0.4
4,266,819	-		GFF4247	0.26	-0.6
4,266,823	-		GFF4247	0.26	-1.5
4,266,826	+		GFF4247	0.27	-0.3
4,266,827	+		GFF4247	0.27	-1.3
4,266,827	+		GFF4247	0.27	-1.4
4,266,827	+		GFF4247	0.27	+1.1
4,266,828	+		GFF4247	0.27	-0.9
4,266,835	-		GFF4247	0.28	-0.0
4,266,835	-		GFF4247	0.28	-1.2
4,266,836	-		GFF4247	0.28	+0.6
4,266,840	-		GFF4247	0.28	-0.4
4,266,840	-		GFF4247	0.28	+0.2
4,266,840	-		GFF4247	0.28	+0.3
4,266,844	+		GFF4247	0.28	-2.0
4,266,856	-		GFF4247	0.30	+0.7
4,266,863	-		GFF4247	0.30	-1.5
4,266,890	-		GFF4247	0.33	+0.3
4,266,900	+		GFF4247	0.34	+0.7
4,266,900	+		GFF4247	0.34	+1.2
4,266,900	+		GFF4247	0.34	-0.5
4,266,900	+		GFF4247	0.34	+0.5
4,266,900	+		GFF4247	0.34	-0.4
4,266,908	-		GFF4247	0.35	-0.0
4,266,908	-		GFF4247	0.35	-0.4
4,266,908	-		GFF4247	0.35	-1.0
4,266,908	-		GFF4247	0.35	-0.9
4,266,908	-		GFF4247	0.35	-0.4
4,266,932	-		GFF4247	0.37	+0.2
4,266,932	-		GFF4247	0.37	+0.2
4,266,988	+		GFF4247	0.42	-3.1
4,267,023	-		GFF4247	0.46	-0.7
4,267,095	-		GFF4247	0.53	-1.2
4,267,116	-		GFF4247	0.55	+1.1
4,267,116	-		GFF4247	0.55	-1.6
4,267,116	-		GFF4247	0.55	+0.4
4,267,116	-		GFF4247	0.55	-0.5
4,267,141	+		GFF4247	0.57	-0.8
4,267,141	+		GFF4247	0.57	+1.2
4,267,141	+		GFF4247	0.57	-0.5
4,267,141	+		GFF4247	0.57	-0.1
4,267,141	+		GFF4247	0.57	-0.2
4,267,141	+		GFF4247	0.57	-0.0
4,267,141	+		GFF4247	0.57	-0.2
4,267,141	+		GFF4247	0.57	-1.6
4,267,141	+		GFF4247	0.57	-0.6
4,267,141	+		GFF4247	0.57	+0.2
4,267,141	+		GFF4247	0.57	+0.3
4,267,141	+		GFF4247	0.57	-1.8
4,267,141	+		GFF4247	0.57	+0.9
4,267,141	+		GFF4247	0.57	-2.0
4,267,141	+		GFF4247	0.57	+0.3
4,267,141	+		GFF4247	0.57	-0.7
4,267,144	-		GFF4247	0.58	-1.3
4,267,145	+		GFF4247	0.58	-0.9
4,267,148	-		GFF4247	0.58	+1.1
4,267,149	-		GFF4247	0.58	-0.9
4,267,149	-		GFF4247	0.58	-1.9
4,267,149	-		GFF4247	0.58	-0.1
4,267,149	-		GFF4247	0.58	-2.6
4,267,149	-		GFF4247	0.58	+0.7
4,267,149	-		GFF4247	0.58	-0.6
4,267,149	-		GFF4247	0.58	-0.4
4,267,149	-		GFF4247	0.58	-0.5
4,267,149	-		GFF4247	0.58	-0.3
4,267,149	-		GFF4247	0.58	-1.4
4,267,149	-		GFF4247	0.58	+0.0
4,267,149	-		GFF4247	0.58	+0.2
4,267,153	-		GFF4247	0.58	-0.7
4,267,165	+		GFF4247	0.60	+0.5
4,267,170	+		GFF4247	0.60	-1.7
4,267,175	-		GFF4247	0.61	+0.4
4,267,181	+		GFF4247	0.61	-0.7
4,267,182	+		GFF4247	0.61	-0.0
4,267,183	-		GFF4247	0.61	+0.2
4,267,187	+		GFF4247	0.62	-1.4
4,267,189	-		GFF4247	0.62	-0.3
4,267,194	+		GFF4247	0.62	-1.2
4,267,199	+		GFF4247	0.63	+0.5
4,267,199	+		GFF4247	0.63	-1.1
4,267,199	+		GFF4247	0.63	-0.7
4,267,199	+		GFF4247	0.63	-0.3
4,267,199	+		GFF4247	0.63	-0.4
4,267,199	+		GFF4247	0.63	-0.5
4,267,199	+		GFF4247	0.63	-0.9
4,267,199	+		GFF4247	0.63	-2.5
4,267,199	+		GFF4247	0.63	-0.6
4,267,199	+		GFF4247	0.63	+0.9
4,267,199	+		GFF4247	0.63	-0.8
4,267,199	+		GFF4247	0.63	+1.5
4,267,199	+		GFF4247	0.63	-1.2
4,267,199	+		GFF4247	0.63	-0.3
4,267,204	+		GFF4247	0.63	-0.2
4,267,204	+		GFF4247	0.63	-0.7
4,267,205	-		GFF4247	0.63	-0.5
4,267,206	+		GFF4247	0.64	-1.4
4,267,207	-		GFF4247	0.64	-0.2
4,267,207	-		GFF4247	0.64	-0.2
4,267,207	-		GFF4247	0.64	-0.6
4,267,207	-		GFF4247	0.64	+1.3
4,267,207	-		GFF4247	0.64	+0.7
4,267,207	-		GFF4247	0.64	+0.4
4,267,207	-		GFF4247	0.64	-0.5
4,267,207	-		GFF4247	0.64	+0.4
4,267,207	-		GFF4247	0.64	-0.7
4,267,207	-		GFF4247	0.64	+0.0
4,267,207	-		GFF4247	0.64	-1.0
4,267,207	-		GFF4247	0.64	-2.6
4,267,207	-		GFF4247	0.64	-1.4
4,267,207	-		GFF4247	0.64	+0.5
4,267,207	-		GFF4247	0.64	-0.6
4,267,207	-		GFF4247	0.64	+0.8
4,267,207	-		GFF4247	0.64	-0.0
4,267,207	-		GFF4247	0.64	-1.4
4,267,207	-		GFF4247	0.64	+0.6
4,267,225	+		GFF4247	0.65	-0.5
4,267,225	+		GFF4247	0.65	+0.5
4,267,225	+		GFF4247	0.65	-1.4
4,267,225	+		GFF4247	0.65	+0.5
4,267,225	+		GFF4247	0.65	-0.1
4,267,225	+		GFF4247	0.65	+1.2
4,267,233	-		GFF4247	0.66	-0.9
4,267,233	-		GFF4247	0.66	+0.3
4,267,233	-		GFF4247	0.66	-0.2
4,267,243	+		GFF4247	0.67	+1.4
4,267,256	-		GFF4247	0.68	-1.5
4,267,261	-		GFF4247	0.69	-0.0
4,267,270	+		GFF4247	0.70	-0.7
4,267,270	+		GFF4247	0.70	+0.1
4,267,270	+		GFF4247	0.70	-2.0
4,267,270	+		GFF4247	0.70	-1.3
4,267,270	+		GFF4247	0.70	-0.3
4,267,271	-		GFF4247	0.70	-0.3
4,267,271	-		GFF4247	0.70	+1.1
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