Strain Fitness in Sphingobium sp. HT1-2 around GFF4230

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,246,212	-		GFF4229	0.53	-0.6
4,246,230	+		GFF4229	0.54	+0.3
4,246,238	-		GFF4229	0.55	+0.5
4,246,240	-		GFF4229	0.55	-0.3
4,246,245	+		GFF4229	0.55	+0.6
4,246,255	-		GFF4229	0.56	+0.1
4,246,286	-		GFF4229	0.58	-1.3
4,246,306	-		GFF4229	0.59	-1.9
4,246,327	-		GFF4229	0.61	-0.4
4,246,361	+		GFF4229	0.63	-0.8
4,246,364	-		GFF4229	0.63	-0.2
4,246,364	-		GFF4229	0.63	+0.5
4,246,366	+		GFF4229	0.63	+0.1
4,246,395	+		GFF4229	0.65	-0.8
4,246,413	-		GFF4229	0.66	-0.0
4,246,427	-		GFF4229	0.67	-0.5
4,246,432	+		GFF4229	0.67	+0.5
4,246,432	+		GFF4229	0.67	+0.4
4,246,438	-		GFF4229	0.68	+0.1
4,246,438	-		GFF4229	0.68	+0.7
4,246,440	-		GFF4229	0.68	+0.0
4,246,440	-		GFF4229	0.68	+0.6
4,246,440	-		GFF4229	0.68	-1.8
4,246,440	-		GFF4229	0.68	-0.5
4,246,455	+		GFF4229	0.69	+1.1
4,246,466	-		GFF4229	0.69	+0.3
4,246,469	-		GFF4229	0.70	-0.6
4,246,469	-		GFF4229	0.70	-2.2
4,246,471	+		GFF4229	0.70	-0.0
4,246,471	-		GFF4229	0.70	+0.0
4,246,481	+		GFF4229	0.70	+1.2
4,246,486	+		GFF4229	0.71	+0.9
4,246,488	+		GFF4229	0.71	-1.7
4,246,488	+		GFF4229	0.71	-1.4
4,246,489	-		GFF4229	0.71	-1.2
4,246,504	+		GFF4229	0.72	-3.2
4,246,541	+		GFF4229	0.74	+0.1
4,246,564	+		GFF4229	0.76	+0.6
4,246,572	-		GFF4229	0.76	-1.8
4,246,615	-		GFF4229	0.79	+1.0
4,246,621	+		GFF4229	0.79	-1.3
4,246,638	+		GFF4229	0.80	+0.1
4,246,642	+		GFF4229	0.81	-0.7
4,246,645	-		GFF4229	0.81	+1.6
4,246,648	+		GFF4229	0.81	-1.3
4,246,648	+		GFF4229	0.81	-1.0
4,246,648	+		GFF4229	0.81	-1.5
4,246,650	-		GFF4229	0.81	+1.0
4,246,656	-		GFF4229	0.82	+1.1
4,246,656	-		GFF4229	0.82	+0.5
4,246,656	-		GFF4229	0.82	-0.5
4,246,656	-		GFF4229	0.82	+0.0
4,246,656	-		GFF4229	0.82	-1.6
4,246,673	-		GFF4229	0.83	+0.7
4,246,673	-		GFF4229	0.83	+0.5
4,246,678	+		GFF4229	0.83	-0.8
4,246,680	+		GFF4229	0.83	+0.6
4,246,685	+		GFF4229	0.83	+0.6
4,246,688	-		GFF4229	0.84	-2.6
4,246,690	+		GFF4229	0.84	-1.8
4,246,690	+		GFF4229	0.84	-1.9
4,246,693	-		GFF4229	0.84	+0.8
4,246,695	+		GFF4229	0.84	-0.8
4,246,695	+		GFF4229	0.84	-0.5
4,246,698	-		GFF4229	0.84	-1.0
4,246,698	-		GFF4229	0.84	-1.2
4,246,698	-		GFF4229	0.84	+0.8
4,246,733	-		GFF4229	0.86	-1.9
4,246,737	-		GFF4229	0.87	-1.4
4,246,770	-		GFF4229	0.89	-0.7
4,246,770	-		GFF4229	0.89	-0.6
4,246,794	-				-0.5
4,246,806	-				+0.3
4,246,818	-				+0.3
4,246,840	-				-0.3
4,246,840	-				+0.2
4,246,840	-				-1.5
4,246,850	-				+0.2
4,246,850	-				-0.3
4,246,856	-				-0.2
4,246,861	+				-1.9
4,246,862	+				-1.7
4,246,867	-				+0.6
4,246,870	-				-0.1
4,246,870	-				-2.8
4,246,913	-				-1.0
4,246,913	-				-1.9
4,246,915	+				-0.7
4,246,915	+				-2.6
4,246,915	+				-1.0
4,246,926	+				+0.4
4,246,934	+				-0.2
4,246,934	+				-0.2
4,246,936	+				+0.1
4,246,942	-				-2.2
4,246,944	-				+0.2
4,246,948	+				-0.3
4,246,981	+				+0.3
4,246,993	+				+0.0
4,246,994	-				-0.7
4,246,998	+				-0.5
4,246,998	+				-2.4
4,246,998	+				+0.5
4,247,003	+				-1.0
4,247,006	-				-0.0
4,247,006	-				+0.4
4,247,006	-				+0.9
4,247,006	-				-1.7
4,247,006	-				-0.0
4,247,020	-				-2.0
4,247,034	-				-0.4
4,247,063	-				-1.8
4,247,113	+				+0.8
4,247,113	+				-0.5
4,247,153	-		GFF4230	0.13	-1.4
4,247,231	+		GFF4230	0.19	-2.8
4,247,244	+		GFF4230	0.20	-1.4
4,247,290	-		GFF4230	0.23	-1.6
4,247,297	+		GFF4230	0.24	+0.5
4,247,301	+		GFF4230	0.24	-1.4
4,247,306	+		GFF4230	0.24	-1.7
4,247,309	-		GFF4230	0.25	-2.1
4,247,309	-		GFF4230	0.25	-2.1
4,247,309	-		GFF4230	0.25	-1.8
4,247,309	-		GFF4230	0.25	-0.5
4,247,309	-		GFF4230	0.25	+0.3
4,247,365	-		GFF4230	0.29	-0.9
4,247,402	+		GFF4230	0.32	+1.0
4,247,420	+		GFF4230	0.33	-2.3
4,247,470	+		GFF4230	0.37	-1.9
4,247,500	+		GFF4230	0.39	-1.4
4,247,500	+		GFF4230	0.39	-1.4
4,247,500	+		GFF4230	0.39	-1.7
4,247,500	+		GFF4230	0.39	-0.7
4,247,500	+		GFF4230	0.39	-1.4
4,247,508	-		GFF4230	0.40	-0.9
4,247,508	-		GFF4230	0.40	+1.0
4,247,508	-		GFF4230	0.40	+1.0
4,247,508	-		GFF4230	0.40	-1.5
4,247,508	-		GFF4230	0.40	-2.2
4,247,508	-		GFF4230	0.40	-0.2
4,247,508	-		GFF4230	0.40	-0.7
4,247,521	+		GFF4230	0.41	-1.5
4,247,521	+		GFF4230	0.41	-0.9
4,247,521	+		GFF4230	0.41	-1.1
4,247,521	+		GFF4230	0.41	-0.1
4,247,529	-		GFF4230	0.42	-0.8
4,247,529	-		GFF4230	0.42	-0.2
4,247,529	-		GFF4230	0.42	-1.4
4,247,529	-		GFF4230	0.42	-0.2
4,247,533	-		GFF4230	0.42	-0.0
4,247,544	+		GFF4230	0.43	+1.1
4,247,546	+		GFF4230	0.43	+0.6
4,247,566	-		GFF4230	0.44	-1.8
4,247,615	+		GFF4230	0.48	-1.4
4,247,623	+		GFF4230	0.49	-1.8
4,247,628	+		GFF4230	0.49	-1.3
4,247,631	-		GFF4230	0.49	-0.9
4,247,679	-		GFF4230	0.53	-1.4
4,247,683	-		GFF4230	0.53	-0.3
4,247,742	-		GFF4230	0.58	-2.1
4,247,770	+		GFF4230	0.60	-1.6
4,247,832	+		GFF4230	0.65	-1.4
4,247,840	-		GFF4230	0.65	-1.8
4,247,840	-		GFF4230	0.65	-1.9
4,247,840	-		GFF4230	0.65	-0.0
4,247,894	-		GFF4230	0.70	-1.4
4,247,920	+		GFF4230	0.72	-2.0
4,248,000	-		GFF4230	0.78	+0.2
4,248,001	-		GFF4230	0.78	+0.1
4,248,002	-		GFF4230	0.78	-1.6
4,248,010	+		GFF4230	0.78	-2.9
4,248,010	+		GFF4230	0.78	-2.3
4,248,015	+		GFF4230	0.79	-0.0
4,248,015	+		GFF4230	0.79	-1.5
4,248,018	-		GFF4230	0.79	-0.6
4,248,018	-		GFF4230	0.79	-1.4
4,248,018	-		GFF4230	0.79	+0.3
4,248,020	+		GFF4230	0.79	-1.8
4,248,023	+		GFF4230	0.79	-1.0
4,248,025	+		GFF4230	0.80	-1.7
4,248,025	+		GFF4230	0.80	-0.8
4,248,025	+		GFF4230	0.80	-1.1
4,248,065	-		GFF4230	0.83	+0.5
4,248,117	+		GFF4230	0.87	-1.1
4,248,117	+		GFF4230	0.87	-2.3
4,248,117	+		GFF4230	0.87	-0.4
4,248,200	-				-1.7
4,248,237	-				-0.7
4,248,237	-				-1.3
4,248,247	-				+1.0
4,248,249	+				+0.7
4,248,259	-				-1.4
4,248,260	-				+0.2
4,248,289	+				-0.7
4,248,312	-				-2.9
4,248,314	+				+0.2
4,248,317	+				-0.0
4,248,317	+				+0.2
4,248,325	-				-1.6
4,248,335	+				-1.0
4,248,336	+				-0.6
4,248,336	+				-1.6
4,248,373	+				-1.4
4,248,395	+				-0.2
4,248,417	+				-0.0
4,248,424	-				-1.6
4,248,461	-				-1.4
4,248,502	-		GFF4231	0.13	-0.7
4,248,518	-		GFF4231	0.14	+0.4
4,248,526	-		GFF4231	0.15	-1.1
4,248,531	-		GFF4231	0.16	+0.1
4,248,538	-		GFF4231	0.17	-0.1
4,248,626	-		GFF4231	0.26	+0.2
4,248,632	-		GFF4231	0.27	+0.2
4,248,634	+		GFF4231	0.27	-1.7
4,248,638	+		GFF4231	0.27	+1.2
4,248,639	-		GFF4231	0.27	-0.4
4,248,643	+		GFF4231	0.28	-0.5
4,248,648	+		GFF4231	0.28	-0.5
4,248,655	+		GFF4231	0.29	-0.6
4,248,656	-		GFF4231	0.29	+0.2
4,248,663	-		GFF4231	0.30	-1.5
4,248,663	-		GFF4231	0.30	+0.2
4,248,673	+		GFF4231	0.31	-0.1
4,248,698	-		GFF4231	0.34	-1.8
4,248,700	-		GFF4231	0.34	+1.1
4,248,727	-		GFF4231	0.37	-1.6
4,248,727	-		GFF4231	0.37	-0.4
4,248,743	-		GFF4231	0.38	-1.5
4,248,756	-		GFF4231	0.40	-1.5
4,248,758	-		GFF4231	0.40	+0.2
4,248,758	-		GFF4231	0.40	-1.3
4,248,758	-		GFF4231	0.40	-1.9
4,248,788	+		GFF4231	0.43	-0.8
4,248,788	+		GFF4231	0.43	-1.4
4,248,796	-		GFF4231	0.44	-1.7
4,248,796	-		GFF4231	0.44	+0.1
4,248,809	+		GFF4231	0.46	-1.0
4,248,815	+		GFF4231	0.46	-1.5
4,248,821	+		GFF4231	0.47	-0.7
4,248,829	-		GFF4231	0.48	-0.2
4,248,844	-		GFF4231	0.49	-0.2
4,248,852	+		GFF4231	0.50	-1.4
4,248,870	+		GFF4231	0.52	-1.5
4,248,889	-		GFF4231	0.54	+0.3
4,248,928	+		GFF4231	0.58	-0.8
4,248,928	+		GFF4231	0.58	+0.8
4,248,936	-		GFF4231	0.59	-0.2
4,248,957	+		GFF4231	0.61	-1.0
4,248,957	+		GFF4231	0.61	-2.0
4,248,965	-		GFF4231	0.62	+0.2
4,248,965	-		GFF4231	0.62	-0.8
4,248,965	-		GFF4231	0.62	-0.7
4,248,965	-		GFF4231	0.62	-1.6
4,248,965	-		GFF4231	0.62	-1.2
4,249,003	-		GFF4231	0.66	-1.5
4,249,011	-		GFF4231	0.67	-2.3
4,249,039	+		GFF4231	0.70	-1.0
4,249,148	-		GFF4231	0.82	+0.0
4,249,148	-		GFF4231	0.82	-1.4
4,249,160	+		GFF4231	0.83	+1.8
4,249,168	-		GFF4231	0.84	+1.1
4,249,168	-		GFF4231	0.84	+0.3
4,249,168	-		GFF4231	0.84	-0.0
4,249,168	-		GFF4231	0.84	+0.2
4,249,210	+		GFF4231	0.89	-1.7
4,249,238	-				-1.5
4,249,276	-				+0.4