Strain Fitness in Sphingobium sp. HT1-2 around GFF4171

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,189,888	-		GFF4169	0.54	-1.4
4,189,991	+		GFF4169	0.67	-1.9
4,190,034	+		GFF4169	0.72	-1.3
4,190,034	+		GFF4169	0.72	-2.9
4,190,034	+		GFF4169	0.72	-1.9
4,190,047	-		GFF4169	0.74	-1.4
4,190,097	+		GFF4169	0.80	-1.4
4,190,099	-		GFF4169	0.80	-1.8
4,190,148	+		GFF4169	0.86	-2.4
4,190,237	-				-2.6
4,190,241	+				+0.5
4,190,241	+				-0.9
4,190,241	+				+0.2
4,190,241	+				-1.4
4,190,241	+				+0.5
4,190,249	-				-0.3
4,190,249	-				-1.4
4,190,249	-				-2.4
4,190,249	-				+0.3
4,190,249	-				-0.7
4,190,249	-				-2.0
4,190,249	-				-1.0
4,190,269	-				+0.1
4,190,284	-				-0.3
4,190,291	+				-1.2
4,190,317	+				-1.4
4,190,325	-		GFF4170	0.11	-0.3
4,190,336	+		GFF4170	0.13	-1.0
4,190,340	+		GFF4170	0.13	-1.1
4,190,340	+		GFF4170	0.13	-0.7
4,190,346	-		GFF4170	0.14	-1.1
4,190,347	-		GFF4170	0.15	+0.0
4,190,348	-		GFF4170	0.15	-1.4
4,190,348	-		GFF4170	0.15	-1.1
4,190,348	-		GFF4170	0.15	-0.4
4,190,348	-		GFF4170	0.15	+0.3
4,190,365	+		GFF4170	0.18	-2.6
4,190,386	-		GFF4170	0.21	-2.2
4,190,398	+		GFF4170	0.23	-1.9
4,190,398	+		GFF4170	0.23	+1.0
4,190,406	-		GFF4170	0.25	-0.2
4,190,406	-		GFF4170	0.25	-0.9
4,190,417	-		GFF4170	0.26	-0.9
4,190,424	+		GFF4170	0.28	-1.5
4,190,455	+		GFF4170	0.33	-0.6
4,190,455	+		GFF4170	0.33	-1.1
4,190,463	-		GFF4170	0.34	+0.6
4,190,463	-		GFF4170	0.34	-0.4
4,190,463	-		GFF4170	0.34	-0.9
4,190,463	-		GFF4170	0.34	+0.8
4,190,468	-		GFF4170	0.35	-1.3
4,190,471	-		GFF4170	0.36	-0.2
4,190,475	-		GFF4170	0.36	+0.3
4,190,499	+		GFF4170	0.40	+0.4
4,190,520	+		GFF4170	0.44	+1.0
4,190,526	-		GFF4170	0.45	-1.9
4,190,530	+		GFF4170	0.45	-1.6
4,190,538	-		GFF4170	0.47	+0.3
4,190,540	-		GFF4170	0.47	-0.4
4,190,559	+		GFF4170	0.50	-0.1
4,190,559	+		GFF4170	0.50	-0.2
4,190,582	+		GFF4170	0.54	+0.7
4,190,584	-		GFF4170	0.55	-1.1
4,190,584	-		GFF4170	0.55	-1.7
4,190,585	-		GFF4170	0.55	-1.4
4,190,587	+		GFF4170	0.55	-0.8
4,190,587	+		GFF4170	0.55	-0.8
4,190,587	+		GFF4170	0.55	-1.0
4,190,587	+		GFF4170	0.55	-0.5
4,190,587	+		GFF4170	0.55	-0.4
4,190,587	+		GFF4170	0.55	-2.9
4,190,587	+		GFF4170	0.55	+0.3
4,190,587	+		GFF4170	0.55	-0.8
4,190,587	+		GFF4170	0.55	-0.8
4,190,587	+		GFF4170	0.55	-2.4
4,190,587	+		GFF4170	0.55	-2.0
4,190,590	-		GFF4170	0.56	+0.7
4,190,590	-		GFF4170	0.56	-1.8
4,190,590	-		GFF4170	0.56	-3.0
4,190,590	-		GFF4170	0.56	-0.4
4,190,590	-		GFF4170	0.56	-0.4
4,190,595	-		GFF4170	0.56	-0.9
4,190,595	-		GFF4170	0.56	-0.9
4,190,596	-		GFF4170	0.57	-1.9
4,190,622	-		GFF4170	0.61	-0.7
4,190,624	+		GFF4170	0.61	-1.6
4,190,624	+		GFF4170	0.61	-1.4
4,190,624	+		GFF4170	0.61	+0.7
4,190,624	+		GFF4170	0.61	+0.4
4,190,632	-		GFF4170	0.63	-0.6
4,190,632	-		GFF4170	0.63	-1.0
4,190,632	-		GFF4170	0.63	+0.1
4,190,632	-		GFF4170	0.63	-0.1
4,190,634	+		GFF4170	0.63	+0.7
4,190,637	-		GFF4170	0.63	-0.0
4,190,641	+		GFF4170	0.64	-0.8
4,190,641	+		GFF4170	0.64	+0.3
4,190,641	+		GFF4170	0.64	-1.6
4,190,646	+		GFF4170	0.65	-1.8
4,190,649	-		GFF4170	0.65	-0.5
4,190,649	-		GFF4170	0.65	-0.9
4,190,649	-		GFF4170	0.65	+0.7
4,190,649	-		GFF4170	0.65	-1.2
4,190,649	-		GFF4170	0.65	-1.6
4,190,654	-		GFF4170	0.66	-0.6
4,190,668	+		GFF4170	0.69	-1.0
4,190,675	+		GFF4170	0.70	-1.9
4,190,676	-		GFF4170	0.70	-1.4
4,190,684	+		GFF4170	0.71	-0.4
4,190,702	+		GFF4170	0.74	-1.5
4,190,710	-		GFF4170	0.76	-0.1
4,190,712	+		GFF4170	0.76	+0.6
4,190,727	+		GFF4170	0.79	-0.9
4,190,771	+		GFF4170	0.86	-0.3
4,190,771	+		GFF4170	0.86	-1.4
4,190,771	+		GFF4170	0.86	-2.6
4,190,771	+		GFF4170	0.86	-1.4
4,190,771	+		GFF4170	0.86	-0.4
4,190,779	-		GFF4170	0.87	-0.4
4,190,779	-		GFF4170	0.87	-0.3
4,190,791	-		GFF4170	0.89	+0.0
4,190,817	-				+1.2
4,190,817	-				-0.9
4,190,817	-				-0.0
4,190,823	+				-0.5
4,190,823	+				-0.1
4,190,831	-				-0.4
4,190,831	-				+0.3
4,190,833	+				-0.7
4,190,838	+				-0.7
4,190,841	-				-0.4
4,190,841	-				-1.8
4,190,846	-				-0.4
4,190,847	-				-1.7
4,190,848	-				+0.1
4,190,863	+				+0.6
4,190,871	-				-1.6
4,190,881	-				+0.1
4,190,891	+				-1.2
4,190,892	+				+0.4
4,190,924	+				+0.7
4,190,982	+		GFF4171	0.16	-1.4
4,190,983	-		GFF4171	0.16	-0.3
4,190,990	-		GFF4171	0.17	-0.2
4,191,007	-		GFF4171	0.19	+0.3
4,191,017	-		GFF4171	0.20	+0.2
4,191,019	-		GFF4171	0.20	-1.6
4,191,085	+		GFF4171	0.28	-0.8
4,191,085	-		GFF4171	0.28	+0.4
4,191,085	-		GFF4171	0.28	-1.4
4,191,085	-		GFF4171	0.28	+1.0
4,191,122	+		GFF4171	0.33	-1.6
4,191,122	-		GFF4171	0.33	-0.3
4,191,130	-		GFF4171	0.34	+0.3
4,191,130	-		GFF4171	0.34	-0.0
4,191,188	+		GFF4171	0.41	-0.3
4,191,202	-		GFF4171	0.42	+0.3
4,191,204	+		GFF4171	0.42	-1.4
4,191,230	-		GFF4171	0.46	-0.4
4,191,302	+		GFF4171	0.54	-1.1
4,191,305	-		GFF4171	0.55	-0.7
4,191,307	+		GFF4171	0.55	+1.4
4,191,307	+		GFF4171	0.55	-0.3
4,191,307	+		GFF4171	0.55	+0.9
4,191,307	+		GFF4171	0.55	+1.6
4,191,315	-		GFF4171	0.56	-1.9
4,191,315	-		GFF4171	0.56	-2.3
4,191,315	-		GFF4171	0.56	-1.7
4,191,315	-		GFF4171	0.56	-0.3
4,191,346	-		GFF4171	0.59	-1.6
4,191,346	-		GFF4171	0.59	+0.6
4,191,374	+		GFF4171	0.63	-1.6
4,191,382	+		GFF4171	0.64	-0.7
4,191,382	+		GFF4171	0.64	-0.3
4,191,382	+		GFF4171	0.64	+0.2
4,191,390	-		GFF4171	0.65	+1.6
4,191,390	-		GFF4171	0.65	-2.0
4,191,390	-		GFF4171	0.65	+0.3
4,191,390	-		GFF4171	0.65	-0.3
4,191,390	-		GFF4171	0.65	+0.3
4,191,398	+		GFF4171	0.66	-0.3
4,191,401	-		GFF4171	0.66	-0.4
4,191,408	+		GFF4171	0.67	-1.9
4,191,416	-		GFF4171	0.68	+0.7
4,191,421	+		GFF4171	0.68	-0.6
4,191,470	+		GFF4171	0.74	-1.7
4,191,478	-		GFF4171	0.75	-0.9
4,191,485	+		GFF4171	0.76	+0.1
4,191,492	-		GFF4171	0.77	-0.9
4,191,492	-		GFF4171	0.77	-1.6
4,191,492	-		GFF4171	0.77	+0.7
4,191,508	-		GFF4171	0.79	-0.2
4,191,558	-		GFF4171	0.85	-0.1
4,191,645	+				-1.3
4,191,664	-				+0.1
4,191,664	-				-0.5
4,191,679	+				-2.3
4,191,679	+				-3.5
4,191,686	-				-0.8
4,191,698	-				-0.9
4,191,703	+				+0.3
4,191,715	+				+1.2
4,191,715	+				+0.7
4,191,715	+				+1.2
4,191,715	+				-0.3
4,191,715	+				-0.7
4,191,723	-				-0.6
4,191,723	-				+0.2
4,191,723	-				+1.7
4,191,723	-				+0.3
4,191,723	-				-0.6
4,191,965	+				-0.9
4,191,965	+				+0.8