Strain Fitness in Sphingobium sp. HT1-2 around GFF4161

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,183,593	+		GFF4159	0.61	+0.6
4,183,595	-		GFF4159	0.62	-0.4
4,183,600	-		GFF4159	0.62	+0.7
4,183,608	+		GFF4159	0.64	-1.4
4,183,609	-		GFF4159	0.64	+0.3
4,183,640	+		GFF4159	0.69	-1.8
4,183,640	+		GFF4159	0.69	-0.2
4,183,640	+		GFF4159	0.69	+0.3
4,183,645	+		GFF4159	0.69	+0.0
4,183,648	-		GFF4159	0.70	+0.0
4,183,676	+		GFF4159	0.74	+0.2
4,183,676	+		GFF4159	0.74	-0.4
4,183,676	+		GFF4159	0.74	-0.5
4,183,684	-		GFF4159	0.76	-1.4
4,183,684	-		GFF4159	0.76	+0.6
4,183,684	-		GFF4159	0.76	+1.0
4,183,698	+		GFF4159	0.78	+0.3
4,183,698	+		GFF4159	0.78	+0.8
4,183,699	+		GFF4159	0.78	-0.7
4,183,699	+		GFF4159	0.78	-0.3
4,183,699	+		GFF4159	0.78	-1.3
4,183,699	+		GFF4159	0.78	+0.6
4,183,707	-		GFF4159	0.79	-2.5
4,183,707	-		GFF4159	0.79	+0.3
4,183,707	-		GFF4159	0.79	+0.9
4,183,707	-		GFF4159	0.79	+1.5
4,183,707	-		GFF4159	0.79	-1.2
4,183,730	+		GFF4159	0.83	+0.3
4,183,730	+		GFF4159	0.83	-0.7
4,183,730	+		GFF4159	0.83	-0.2
4,183,730	+		GFF4159	0.83	-0.7
4,183,743	+		GFF4159	0.85	-1.3
4,183,775	-		GFF4159	0.90	-0.5
4,183,781	-				-0.7
4,183,787	+				+0.2
4,183,806	-				+0.5
4,183,806	-				+1.0
4,183,853	-				-1.5
4,183,855	+				+0.7
4,183,855	+				+1.1
4,183,855	+				-0.8
4,183,863	-				-0.3
4,183,863	-				-1.4
4,183,912	-				+0.3
4,183,916	+				+0.2
4,183,923	+				+0.7
4,183,953	+				-1.0
4,183,961	-				+1.2
4,183,961	-				+0.9
4,183,963	+		GFF4160	0.10	+0.6
4,183,963	+		GFF4160	0.10	-1.8
4,183,963	+		GFF4160	0.10	-0.0
4,183,971	-		GFF4160	0.11	+0.6
4,183,971	-		GFF4160	0.11	-0.5
4,183,971	-		GFF4160	0.11	-2.9
4,183,971	-		GFF4160	0.11	-0.8
4,183,971	-		GFF4160	0.11	-0.2
4,183,978	-		GFF4160	0.12	-0.3
4,183,988	+		GFF4160	0.14	-0.7
4,183,993	+		GFF4160	0.15	-1.8
4,184,021	+		GFF4160	0.19	-0.3
4,184,043	+		GFF4160	0.23	+0.2
4,184,088	-		GFF4160	0.30	+0.2
4,184,096	-		GFF4160	0.31	-0.2
4,184,098	+		GFF4160	0.31	-0.4
4,184,098	+		GFF4160	0.31	-0.1
4,184,105	+		GFF4160	0.32	+1.3
4,184,106	-		GFF4160	0.32	-0.1
4,184,113	-		GFF4160	0.33	-0.6
4,184,129	+		GFF4160	0.36	-0.6
4,184,132	-		GFF4160	0.36	-0.1
4,184,137	-		GFF4160	0.37	+0.2
4,184,159	-		GFF4160	0.41	-0.3
4,184,162	+		GFF4160	0.41	+0.0
4,184,162	+		GFF4160	0.41	-0.7
4,184,165	-		GFF4160	0.42	-1.7
4,184,167	+		GFF4160	0.42	-1.7
4,184,167	+		GFF4160	0.42	+0.5
4,184,170	-		GFF4160	0.42	-1.5
4,184,175	-		GFF4160	0.43	-2.0
4,184,177	+		GFF4160	0.44	+0.7
4,184,177	+		GFF4160	0.44	-0.6
4,184,177	+		GFF4160	0.44	-0.3
4,184,185	-		GFF4160	0.45	-0.2
4,184,191	+		GFF4160	0.46	-0.1
4,184,199	-		GFF4160	0.47	-1.3
4,184,228	+		GFF4160	0.51	-1.1
4,184,234	-		GFF4160	0.52	+1.1
4,184,238	+		GFF4160	0.53	-0.7
4,184,238	+		GFF4160	0.53	-1.6
4,184,238	+		GFF4160	0.53	+1.4
4,184,238	+		GFF4160	0.53	+0.8
4,184,246	-		GFF4160	0.54	+1.5
4,184,246	-		GFF4160	0.54	+1.8
4,184,284	+		GFF4160	0.60	+0.3
4,184,284	+		GFF4160	0.60	-0.7
4,184,289	-		GFF4160	0.61	-0.5
4,184,300	-		GFF4160	0.63	-0.1
4,184,301	+		GFF4160	0.63	-0.4
4,184,322	+		GFF4160	0.66	-1.7
4,184,322	+		GFF4160	0.66	+0.7
4,184,322	+		GFF4160	0.66	+0.3
4,184,322	+		GFF4160	0.66	-0.3
4,184,322	+		GFF4160	0.66	-0.0
4,184,322	+		GFF4160	0.66	+0.3
4,184,322	+		GFF4160	0.66	-0.4
4,184,322	+		GFF4160	0.66	-2.8
4,184,322	+		GFF4160	0.66	+0.7
4,184,322	+		GFF4160	0.66	-1.3
4,184,322	+		GFF4160	0.66	-1.0
4,184,330	-		GFF4160	0.67	-0.4
4,184,330	-		GFF4160	0.67	-0.3
4,184,330	-		GFF4160	0.67	-0.5
4,184,330	-		GFF4160	0.67	+0.8
4,184,330	-		GFF4160	0.67	+1.0
4,184,330	-		GFF4160	0.67	-2.4
4,184,330	-		GFF4160	0.67	-0.0
4,184,335	+		GFF4160	0.68	-0.8
4,184,337	+		GFF4160	0.69	+0.3
4,184,337	+		GFF4160	0.69	-0.5
4,184,337	+		GFF4160	0.69	+0.1
4,184,337	+		GFF4160	0.69	-0.3
4,184,337	+		GFF4160	0.69	-1.0
4,184,343	-		GFF4160	0.69	-1.4
4,184,345	-		GFF4160	0.70	-0.7
4,184,345	-		GFF4160	0.70	-0.7
4,184,355	+		GFF4160	0.71	+0.2
4,184,355	+		GFF4160	0.71	-0.3
4,184,358	-		GFF4160	0.72	-2.0
4,184,381	+		GFF4160	0.75	-0.9
4,184,383	+		GFF4160	0.76	-0.5
4,184,399	+		GFF4160	0.78	+0.5
4,184,407	-		GFF4160	0.79	+0.8
4,184,407	-		GFF4160	0.79	-2.7
4,184,410	-		GFF4160	0.80	+1.3
4,184,429	+		GFF4160	0.83	-0.8
4,184,442	-		GFF4160	0.85	+0.2
4,184,455	+		GFF4160	0.87	-0.2
4,184,457	-		GFF4160	0.87	+0.8
4,184,460	+		GFF4160	0.88	-0.7
4,184,460	+		GFF4160	0.88	-0.7
4,184,465	+		GFF4160	0.89	+1.2
4,184,468	-		GFF4160	0.89	+0.9
4,184,497	-				-2.2
4,184,497	-				-2.8
4,184,520	-				+0.5
4,184,524	-				+0.8
4,184,573	+				-1.9
4,184,573	+				-0.6
4,184,576	-				+0.8
4,184,576	-				+1.4
4,184,581	-				-0.4
4,184,581	-				-1.4
4,184,581	-				-0.7
4,184,581	-				-0.3
4,184,581	-				-0.8
4,184,583	+				-2.0
4,184,596	+				-0.9
4,184,610	+				+0.8
4,184,656	+		GFF4161	0.16	+1.3
4,184,662	+		GFF4161	0.17	-2.8
4,184,662	+		GFF4161	0.17	-2.6
4,184,662	+		GFF4161	0.17	-0.3
4,184,662	+		GFF4161	0.17	-0.1
4,184,664	-		GFF4161	0.17	-0.9
4,184,670	-		GFF4161	0.18	+1.3
4,184,701	+		GFF4161	0.24	-0.9
4,184,708	+		GFF4161	0.26	-0.9
4,184,709	-		GFF4161	0.26	+1.5
4,184,709	-		GFF4161	0.26	-1.3
4,184,714	-		GFF4161	0.27	-1.3
4,184,716	+		GFF4161	0.27	-0.8
4,184,736	+		GFF4161	0.31	+0.2
4,184,739	-		GFF4161	0.32	+0.4
4,184,741	+		GFF4161	0.32	-0.2
4,184,741	+		GFF4161	0.32	+0.6
4,184,754	-		GFF4161	0.35	+0.6
4,184,787	+		GFF4161	0.41	-0.8
4,184,795	-		GFF4161	0.43	+0.0
4,184,854	-		GFF4161	0.55	-0.3
4,184,888	+		GFF4161	0.61	-2.0
4,184,895	+		GFF4161	0.63	-1.5
4,184,903	-		GFF4161	0.64	-1.8
4,184,903	-		GFF4161	0.64	+0.7
4,184,908	+		GFF4161	0.65	-1.1
4,184,913	+		GFF4161	0.66	+0.9
4,184,925	+		GFF4161	0.69	-0.9
4,184,949	-		GFF4161	0.73	+0.3
4,184,970	+		GFF4161	0.78	+0.3
4,185,038	+				+0.5
4,185,041	-				-1.8
4,185,046	-				-0.3
4,185,051	-				-0.7
4,185,070	-				+1.6
4,185,137	+				-0.5
4,185,137	+				-1.1
4,185,138	-				-0.2
4,185,145	-				-2.8
4,185,158	-				-0.4
4,185,158	-				-0.6
4,185,159	+				-2.7
4,185,176	-				+0.2
4,185,220	-				-0.5
4,185,221	+				+1.5
4,185,227	+				-0.3
4,185,235	-				-0.0
4,185,235	-				-1.1
4,185,260	+		GFF4162	0.11	+0.2
4,185,260	+		GFF4162	0.11	-0.6
4,185,268	-		GFF4162	0.12	-0.1
4,185,270	-		GFF4162	0.12	-1.4
4,185,275	+		GFF4162	0.13	-0.5
4,185,275	+		GFF4162	0.13	+0.7
4,185,275	+		GFF4162	0.13	+0.5
4,185,275	+		GFF4162	0.13	-0.2
4,185,283	-		GFF4162	0.14	-0.2
4,185,283	-		GFF4162	0.14	+1.7
4,185,283	-		GFF4162	0.14	-0.3
4,185,283	-		GFF4162	0.14	-1.8
4,185,285	+		GFF4162	0.15	+2.1
4,185,293	-		GFF4162	0.16	-1.3
4,185,295	+		GFF4162	0.16	+0.3
4,185,308	-		GFF4162	0.18	+0.2
4,185,335	+		GFF4162	0.22	-1.1
4,185,378	-		GFF4162	0.28	+1.3
4,185,378	-		GFF4162	0.28	+0.5
4,185,385	-		GFF4162	0.29	+1.0
4,185,386	+		GFF4162	0.30	-0.5
4,185,386	+		GFF4162	0.30	+0.4
4,185,386	+		GFF4162	0.30	+0.1
4,185,391	+		GFF4162	0.30	+0.9
4,185,394	-		GFF4162	0.31	-0.6
4,185,394	-		GFF4162	0.31	-0.7
4,185,394	-		GFF4162	0.31	-0.3
4,185,394	-		GFF4162	0.31	+0.7
4,185,394	-		GFF4162	0.31	-1.3
4,185,394	-		GFF4162	0.31	+1.6
4,185,394	-		GFF4162	0.31	+0.2
4,185,394	-		GFF4162	0.31	+0.5
4,185,394	-		GFF4162	0.31	-0.8
4,185,401	+		GFF4162	0.32	+0.3
4,185,405	+		GFF4162	0.32	-0.1
4,185,413	+		GFF4162	0.34	-1.4
4,185,421	-		GFF4162	0.35	+0.4
4,185,447	-		GFF4162	0.39	+0.7
4,185,462	-		GFF4162	0.41	+0.0
4,185,477	-		GFF4162	0.43	+0.4
4,185,486	-		GFF4162	0.44	+0.5
4,185,487	-		GFF4162	0.45	+0.6
4,185,494	+		GFF4162	0.46	-1.1
4,185,494	+		GFF4162	0.46	+0.7
4,185,494	-		GFF4162	0.46	-0.3
4,185,500	-		GFF4162	0.47	+1.2
4,185,544	+		GFF4162	0.53	-2.3
4,185,563	-		GFF4162	0.56	-1.8
4,185,563	-		GFF4162	0.56	+0.9
4,185,564	-		GFF4162	0.56	+0.3
4,185,577	+		GFF4162	0.58	+1.0
4,185,577	+		GFF4162	0.58	+0.3
4,185,578	+		GFF4162	0.58	-1.2
4,185,585	-		GFF4162	0.59	-0.8
4,185,590	-		GFF4162	0.60	+0.4
4,185,592	+		GFF4162	0.60	+0.0
4,185,592	+		GFF4162	0.60	-1.5
4,185,593	+		GFF4162	0.60	+0.1
4,185,593	+		GFF4162	0.60	+0.4
4,185,593	+		GFF4162	0.60	+0.6
4,185,600	-		GFF4162	0.61	-0.2
4,185,600	-		GFF4162	0.61	+0.7
4,185,607	-		GFF4162	0.62	-1.0
4,185,614	-		GFF4162	0.64	-1.8
4,185,673	-		GFF4162	0.72	+0.2
4,185,704	-		GFF4162	0.77	-0.9
4,185,710	-		GFF4162	0.78	-0.4
4,185,716	+		GFF4162	0.79	+0.0
4,185,720	-		GFF4162	0.79	-0.1
4,185,720	-		GFF4162	0.79	+0.8
4,185,724	-		GFF4162	0.80	-1.0
4,185,724	-		GFF4162	0.80	-1.1
4,185,749	+		GFF4162	0.84	+1.2
4,185,757	-		GFF4162	0.85	+0.0
4,185,757	-		GFF4162	0.85	-0.3
4,185,757	-		GFF4162	0.85	+1.3
4,185,759	+		GFF4162	0.85	+0.8
4,185,764	-		GFF4162	0.86	+0.6
4,185,814	-				+0.3
4,185,841	+				-0.9
4,185,849	-				+0.1
4,185,861	-				-0.4
4,185,913	-				+0.1
4,185,918	+				-0.6
4,185,929	+				-1.2
4,185,929	+				-0.2
4,185,929	+				-0.0
4,185,935	+				-0.4
4,185,937	-				+0.8
4,185,937	-				+0.3
4,185,980	+				-0.1
4,186,009	-				-1.0
4,186,018	+				+0.5
4,186,024	-				+0.1
4,186,026	-				-0.3
4,186,060	+				+0.9