Strain Fitness in Sphingobium sp. HT1-2 around GFF4136

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,159,494	-		GFF4133	0.56	-0.4
4,159,525	+		GFF4133	0.58	-1.5
4,159,562	-		GFF4133	0.61	-0.0
4,159,686	+		GFF4133	0.70	+0.1
4,159,710	-		GFF4133	0.72	-2.5
4,159,712	+		GFF4133	0.72	-0.5
4,159,725	-		GFF4133	0.74	-1.5
4,159,765	-		GFF4133	0.77	-0.2
4,159,765	-		GFF4133	0.77	-2.3
4,159,814	+		GFF4133	0.80	+0.6
4,159,841	-		GFF4133	0.83	-2.5
4,159,846	-		GFF4133	0.83	+0.7
4,159,846	-		GFF4133	0.83	-0.7
4,159,861	+		GFF4133	0.84	+0.6
4,159,871	+		GFF4133	0.85	+0.3
4,159,874	+		GFF4133	0.85	+0.7
4,159,885	-		GFF4133	0.86	-0.2
4,159,890	-		GFF4133	0.86	-0.2
4,159,924	+		GFF4133	0.89	+0.6
4,159,939	+				+0.8
4,159,947	-				+0.2
4,159,970	+				+0.1
4,159,970	+				+1.1
4,159,970	-				-0.3
4,159,978	-				-0.4
4,160,019	-				-0.8
4,160,042	-				-0.2
4,160,042	-				+0.9
4,160,042	-				-0.9
4,160,071	-				-0.5
4,160,071	-				+1.3
4,160,071	-				-0.3
4,160,085	+				-1.0
4,160,097	+		GFF4134	0.12	-1.3
4,160,097	+		GFF4134	0.12	-0.5
4,160,107	+		GFF4134	0.16	+0.3
4,160,107	+		GFF4134	0.16	+1.2
4,160,125	+		GFF4134	0.23	+0.0
4,160,166	+		GFF4134	0.39	-1.3
4,160,166	+		GFF4134	0.39	-0.1
4,160,166	+		GFF4134	0.39	+1.1
4,160,166	+		GFF4134	0.39	+0.9
4,160,166	+		GFF4134	0.39	+0.3
4,160,174	-		GFF4134	0.42	-1.6
4,160,174	-		GFF4134	0.42	+0.2
4,160,174	-		GFF4134	0.42	+0.6
4,160,174	-		GFF4134	0.42	-0.6
4,160,174	-		GFF4134	0.42	-0.5
4,160,178	+		GFF4134	0.43	-1.3
4,160,196	-		GFF4134	0.50	-0.4
4,160,211	+		GFF4134	0.56	+0.9
4,160,214	-		GFF4134	0.57	-0.1
4,160,214	-		GFF4134	0.57	+0.1
4,160,214	-		GFF4134	0.57	-0.5
4,160,216	+		GFF4134	0.58	+1.2
4,160,224	-		GFF4134	0.61	-1.6
4,160,226	+		GFF4134	0.62	-1.5
4,160,228	-		GFF4134	0.63	-1.2
4,160,236	-		GFF4134	0.66	+1.3
4,160,250	+		GFF4134	0.71	-0.1
4,160,250	+		GFF4134	0.71	+0.1
4,160,258	-		GFF4134	0.74	+0.1
4,160,258	-		GFF4134	0.74	-1.3
4,160,258	-		GFF4134	0.74	-1.8
4,160,267	+		GFF4134	0.78	+0.0
4,160,303	-				-0.6
4,160,324	+				-1.9
4,160,329	+				+0.1
4,160,332	-				+0.7
4,160,339	+				-1.4
4,160,347	-				-0.1
4,160,372	-				-1.9
4,160,381	+		GFF4135	0.11	+0.7
4,160,389	-		GFF4135	0.18	-0.6
4,160,416	+		GFF4135	0.40	-0.3
4,160,418	+		GFF4135	0.41	-0.7
4,160,421	-		GFF4135	0.44	+1.0
4,160,424	+		GFF4135	0.46	-1.7
4,160,424	-		GFF4135	0.46	-1.6
4,160,424	-		GFF4135	0.46	+0.4
4,160,445	-		GFF4135	0.63	-1.8
4,160,474	-		GFF4135	0.87	+0.4
4,160,474	-		GFF4135	0.87	+1.2
4,160,474	-		GFF4135	0.87	-0.8
4,160,480	-				-1.4
4,160,508	-				-0.8
4,160,515	+				+0.1
4,160,522	+				-0.0
4,160,522	-				-0.5
4,160,561	+		GFF4136	0.10	+0.2
4,160,561	+		GFF4136	0.10	+0.2
4,160,573	-		GFF4136	0.12	+0.3
4,160,635	+		GFF4136	0.21	+0.1
4,160,643	-		GFF4136	0.22	-0.8
4,160,666	+		GFF4136	0.25	+0.5
4,160,666	+		GFF4136	0.25	-0.3
4,160,666	+		GFF4136	0.25	-0.3
4,160,666	+		GFF4136	0.25	+0.4
4,160,666	+		GFF4136	0.25	-0.6
4,160,666	+		GFF4136	0.25	-1.3
4,160,674	-		GFF4136	0.26	-1.2
4,160,674	-		GFF4136	0.26	-0.3
4,160,674	-		GFF4136	0.26	-0.9
4,160,676	+		GFF4136	0.27	+0.5
4,160,717	+		GFF4136	0.33	+0.2
4,160,725	-		GFF4136	0.34	-0.0
4,160,744	+		GFF4136	0.36	+0.3
4,160,748	-		GFF4136	0.37	+0.5
4,160,764	-		GFF4136	0.39	+1.4
4,160,766	+		GFF4136	0.40	-1.7
4,160,766	+		GFF4136	0.40	-0.5
4,160,766	+		GFF4136	0.40	+0.3
4,160,766	+		GFF4136	0.40	+0.6
4,160,766	+		GFF4136	0.40	+0.8
4,160,766	+		GFF4136	0.40	-2.0
4,160,766	+		GFF4136	0.40	+0.3
4,160,766	+		GFF4136	0.40	-0.0
4,160,774	-		GFF4136	0.41	+1.1
4,160,784	-		GFF4136	0.42	-0.8
4,160,806	+		GFF4136	0.45	-1.9
4,160,823	-		GFF4136	0.48	-0.3
4,160,835	+		GFF4136	0.49	+0.5
4,160,835	+		GFF4136	0.49	-0.8
4,160,843	-		GFF4136	0.51	-0.1
4,160,872	+		GFF4136	0.55	-1.8
4,160,880	-		GFF4136	0.56	+1.2
4,160,880	-		GFF4136	0.56	-0.7
4,160,918	+		GFF4136	0.61	-1.7
4,160,926	-		GFF4136	0.62	+0.7
4,160,946	-		GFF4136	0.65	+0.1
4,160,987	+		GFF4136	0.71	+0.4
4,160,995	+		GFF4136	0.72	-0.5
4,161,001	+		GFF4136	0.73	-2.7
4,161,027	-		GFF4136	0.77	+0.7
4,161,029	+		GFF4136	0.77	-0.5
4,161,062	-		GFF4136	0.82	+0.4
4,161,067	-		GFF4136	0.82	-0.4
4,161,067	-		GFF4136	0.82	+0.7
4,161,067	-		GFF4136	0.82	+0.6
4,161,073	-		GFF4136	0.83	-2.1
4,161,073	-		GFF4136	0.83	+1.0
4,161,082	+		GFF4136	0.85	+0.5
4,161,082	+		GFF4136	0.85	-1.4
4,161,096	-		GFF4136	0.87	-0.5
4,161,096	-		GFF4136	0.87	-0.1
4,161,096	-		GFF4136	0.87	-0.2
4,161,150	+				-1.4
4,161,199	+				-1.1
4,161,199	+				-0.2
4,161,221	+				-0.9
4,161,231	+				-0.6
4,161,232	+				-1.8
4,161,232	+				-0.1
4,161,274	-				+0.3
4,161,275	+				-0.6
4,161,288	+		GFF4137	0.10	-0.2
4,161,302	+		GFF4137	0.12	-0.8
4,161,302	+		GFF4137	0.12	-1.3
4,161,303	+		GFF4137	0.12	+0.7
4,161,310	-		GFF4137	0.12	-1.4
4,161,310	-		GFF4137	0.12	+0.7
4,161,321	-		GFF4137	0.14	-1.0
4,161,331	+		GFF4137	0.15	+0.5
4,161,339	-		GFF4137	0.15	-1.5
4,161,345	+		GFF4137	0.16	+0.5
4,161,347	+		GFF4137	0.16	-1.1
4,161,347	+		GFF4137	0.16	-0.1
4,161,352	+		GFF4137	0.17	-0.7
4,161,353	-		GFF4137	0.17	+0.7
4,161,358	-		GFF4137	0.17	-0.3
4,161,358	-		GFF4137	0.17	+1.5
4,161,360	+		GFF4137	0.18	+0.7
4,161,360	+		GFF4137	0.18	-0.1
4,161,360	+		GFF4137	0.18	-0.3
4,161,360	+		GFF4137	0.18	-0.9
4,161,360	+		GFF4137	0.18	-0.0
4,161,360	+		GFF4137	0.18	+0.6
4,161,360	-		GFF4137	0.18	-0.8
4,161,368	-		GFF4137	0.18	+0.7
4,161,368	-		GFF4137	0.18	-0.6
4,161,371	+		GFF4137	0.19	-0.7
4,161,377	+		GFF4137	0.19	-0.3
4,161,387	-		GFF4137	0.20	-0.6
4,161,388	+		GFF4137	0.20	+0.1
4,161,396	-		GFF4137	0.21	-0.7
4,161,401	-		GFF4137	0.22	+0.4
4,161,401	-		GFF4137	0.22	+0.2
4,161,412	+		GFF4137	0.23	+0.9
4,161,412	+		GFF4137	0.23	-1.7
4,161,412	+		GFF4137	0.23	-0.4
4,161,418	-		GFF4137	0.24	-0.4
4,161,418	-		GFF4137	0.24	-0.8
4,161,427	+		GFF4137	0.24	-1.2
4,161,427	+		GFF4137	0.24	-0.5
4,161,427	+		GFF4137	0.24	+0.3
4,161,432	+		GFF4137	0.25	+0.0
4,161,440	+		GFF4137	0.26	-1.6
4,161,454	-		GFF4137	0.27	-0.5
4,161,457	-		GFF4137	0.28	+0.1
4,161,475	+		GFF4137	0.29	-0.6
4,161,480	+		GFF4137	0.30	-0.6
4,161,483	-		GFF4137	0.30	-1.2
4,161,483	-		GFF4137	0.30	-0.3
4,161,483	-		GFF4137	0.30	+1.1
4,161,485	-		GFF4137	0.30	+0.7
4,161,487	+		GFF4137	0.31	+0.8
4,161,488	-		GFF4137	0.31	+0.1
4,161,518	-		GFF4137	0.34	+0.1
4,161,525	-		GFF4137	0.35	-1.8
4,161,535	-		GFF4137	0.36	-0.3
4,161,557	+		GFF4137	0.38	+0.4
4,161,557	+		GFF4137	0.38	-0.1
4,161,557	+		GFF4137	0.38	+0.9
4,161,565	-		GFF4137	0.39	-1.0
4,161,598	-		GFF4137	0.42	+0.7
4,161,603	-		GFF4137	0.43	+0.9
4,161,621	+		GFF4137	0.44	-0.0
4,161,626	+		GFF4137	0.45	+0.0
4,161,626	+		GFF4137	0.45	-0.2
4,161,629	-		GFF4137	0.45	-0.2
4,161,629	-		GFF4137	0.45	+0.4
4,161,634	-		GFF4137	0.46	+0.5
4,161,634	-		GFF4137	0.46	+0.3
4,161,635	-		GFF4137	0.46	-1.2
4,161,646	+		GFF4137	0.47	-1.2
4,161,657	+		GFF4137	0.48	-1.2
4,161,667	-		GFF4137	0.49	+1.2
4,161,691	-		GFF4137	0.52	-0.6
4,161,697	-		GFF4137	0.52	-0.1
4,161,707	-		GFF4137	0.53	-0.3
4,161,739	-		GFF4137	0.57	-0.4
4,161,744	-		GFF4137	0.57	-0.3
4,161,750	-		GFF4137	0.58	-1.1
4,161,752	+		GFF4137	0.58	-1.2
4,161,792	-		GFF4137	0.62	+0.8
4,161,797	-		GFF4137	0.63	-1.8
4,161,806	+		GFF4137	0.63	-1.0
4,161,816	-		GFF4137	0.65	+0.2
4,161,834	+		GFF4137	0.66	+0.9
4,161,847	-		GFF4137	0.68	-0.5
4,161,850	-		GFF4137	0.68	-0.1
4,161,882	+		GFF4137	0.71	-0.0
4,161,882	+		GFF4137	0.71	-0.1
4,161,885	-		GFF4137	0.72	+0.2
4,161,890	-		GFF4137	0.72	+0.2
4,161,926	-		GFF4137	0.76	-3.1
4,161,950	-		GFF4137	0.78	-0.5
4,161,957	+		GFF4137	0.79	-0.0
4,161,957	+		GFF4137	0.79	+0.1
4,161,969	-		GFF4137	0.80	+0.2
4,161,978	+		GFF4137	0.81	-0.5
4,161,978	-		GFF4137	0.81	+0.5
4,161,978	-		GFF4137	0.81	+1.5
4,161,989	+		GFF4137	0.82	-1.3
4,162,010	+		GFF4137	0.84	+1.2
4,162,010	+		GFF4137	0.84	-0.6
4,162,021	+		GFF4137	0.86	-1.5
4,162,065	-				-1.6
4,162,067	+				-0.7
4,162,071	+				-0.3
4,162,071	+				-0.5
4,162,071	+				+0.6
4,162,071	+				-1.5
4,162,071	+				+0.1
4,162,071	+				-2.1
4,162,076	+				+0.2
4,162,079	-				-2.9
4,162,079	-				+0.2
4,162,086	-				-0.0
4,162,088	+				+0.1
4,162,096	-				+0.8
4,162,111	-				-1.4
4,162,134	+				-0.9
4,162,134	+				+0.4
4,162,146	+				+1.2
4,162,146	+				-0.6
4,162,154	-				-0.8
4,162,155	+				-1.3
4,162,155	+				-0.0
4,162,163	-				+0.7
4,162,163	-				-0.2
4,162,176	+				-0.5
4,162,179	-				+0.2
4,162,184	-				+0.2
4,162,184	-				-2.1