Strain Fitness in Sphingobium sp. HT1-2 around GFF4101

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,119,281	+		GFF4100	0.38	-0.1
4,119,283	+		GFF4100	0.38	-0.7
4,119,289	-		GFF4100	0.38	-1.2
4,119,291	-		GFF4100	0.38	-0.0
4,119,291	-		GFF4100	0.38	+0.1
4,119,306	+		GFF4100	0.39	-0.4
4,119,307	+		GFF4100	0.39	-0.9
4,119,319	+		GFF4100	0.40	+0.0
4,119,319	+		GFF4100	0.40	-0.9
4,119,319	+		GFF4100	0.40	+0.9
4,119,327	-		GFF4100	0.41	+0.5
4,119,360	+		GFF4100	0.43	+0.4
4,119,382	+		GFF4100	0.44	+0.3
4,119,390	-		GFF4100	0.45	-0.5
4,119,392	+		GFF4100	0.45	+0.3
4,119,408	+		GFF4100	0.46	-0.4
4,119,411	-		GFF4100	0.46	-0.7
4,119,411	-		GFF4100	0.46	+0.6
4,119,428	+		GFF4100	0.47	+0.6
4,119,428	-		GFF4100	0.47	+0.6
4,119,428	-		GFF4100	0.47	+0.2
4,119,430	+		GFF4100	0.47	-0.8
4,119,430	-		GFF4100	0.47	-1.7
4,119,436	+		GFF4100	0.48	-1.2
4,119,438	-		GFF4100	0.48	+2.0
4,119,438	-		GFF4100	0.48	+0.3
4,119,438	-		GFF4100	0.48	+0.0
4,119,449	-		GFF4100	0.49	+0.1
4,119,462	+		GFF4100	0.49	+0.5
4,119,486	+		GFF4100	0.51	+1.6
4,119,486	+		GFF4100	0.51	+1.4
4,119,486	+		GFF4100	0.51	-0.4
4,119,486	+		GFF4100	0.51	+0.4
4,119,486	+		GFF4100	0.51	+0.6
4,119,486	+		GFF4100	0.51	+0.5
4,119,486	+		GFF4100	0.51	-0.0
4,119,486	+		GFF4100	0.51	+0.6
4,119,486	+		GFF4100	0.51	-0.2
4,119,486	+		GFF4100	0.51	+0.1
4,119,494	-		GFF4100	0.52	-0.2
4,119,494	-		GFF4100	0.52	+0.6
4,119,494	-		GFF4100	0.52	-0.5
4,119,494	-		GFF4100	0.52	-0.4
4,119,494	-		GFF4100	0.52	-0.5
4,119,494	-		GFF4100	0.52	+0.0
4,119,494	-		GFF4100	0.52	-0.1
4,119,494	-		GFF4100	0.52	-0.8
4,119,494	-		GFF4100	0.52	-0.1
4,119,501	-		GFF4100	0.52	+0.2
4,119,516	-		GFF4100	0.53	-0.2
4,119,516	-		GFF4100	0.53	-2.3
4,119,516	-		GFF4100	0.53	-1.0
4,119,516	-		GFF4100	0.53	+0.1
4,119,524	+		GFF4100	0.53	-0.8
4,119,532	-		GFF4100	0.54	-2.0
4,119,537	-		GFF4100	0.54	-0.1
4,119,537	-		GFF4100	0.54	+0.1
4,119,543	-		GFF4100	0.55	-0.4
4,119,560	-		GFF4100	0.56	-1.5
4,119,575	+		GFF4100	0.57	+1.2
4,119,575	+		GFF4100	0.57	-1.4
4,119,579	-		GFF4100	0.57	-0.2
4,119,583	-		GFF4100	0.57	-1.9
4,119,621	-		GFF4100	0.60	+0.4
4,119,644	+		GFF4100	0.61	-1.0
4,119,645	+		GFF4100	0.61	+0.3
4,119,645	+		GFF4100	0.61	-0.7
4,119,645	+		GFF4100	0.61	+0.5
4,119,645	+		GFF4100	0.61	-0.2
4,119,652	-		GFF4100	0.62	+0.9
4,119,653	-		GFF4100	0.62	+0.1
4,119,653	-		GFF4100	0.62	-0.5
4,119,671	+		GFF4100	0.63	-0.7
4,119,679	-		GFF4100	0.64	-0.4
4,119,679	-		GFF4100	0.64	+1.5
4,119,679	-		GFF4100	0.64	-2.0
4,119,727	+		GFF4100	0.67	+0.5
4,119,737	+		GFF4100	0.67	+0.2
4,119,759	+		GFF4100	0.69	-2.1
4,119,759	+		GFF4100	0.69	+0.7
4,119,786	+		GFF4100	0.71	-0.6
4,119,786	+		GFF4100	0.71	+0.5
4,119,786	+		GFF4100	0.71	+0.9
4,119,786	+		GFF4100	0.71	-0.2
4,119,786	-		GFF4100	0.71	+0.4
4,119,791	+		GFF4100	0.71	+1.2
4,119,791	-		GFF4100	0.71	+0.9
4,119,793	+		GFF4100	0.71	-0.7
4,119,794	-		GFF4100	0.71	-0.3
4,119,794	-		GFF4100	0.71	+0.2
4,119,794	-		GFF4100	0.71	+0.5
4,119,794	-		GFF4100	0.71	-0.2
4,119,796	+		GFF4100	0.71	+0.5
4,119,796	+		GFF4100	0.71	+0.8
4,119,796	+		GFF4100	0.71	-0.3
4,119,796	+		GFF4100	0.71	-0.4
4,119,799	-		GFF4100	0.72	-0.1
4,119,801	+		GFF4100	0.72	+0.5
4,119,801	+		GFF4100	0.72	-1.2
4,119,801	+		GFF4100	0.72	-0.2
4,119,801	+		GFF4100	0.72	-0.8
4,119,801	+		GFF4100	0.72	+0.1
4,119,804	-		GFF4100	0.72	-2.4
4,119,804	-		GFF4100	0.72	-0.8
4,119,804	-		GFF4100	0.72	+1.0
4,119,804	-		GFF4100	0.72	-1.3
4,119,809	-		GFF4100	0.72	+0.7
4,119,809	-		GFF4100	0.72	+0.4
4,119,809	-		GFF4100	0.72	+1.4
4,119,809	-		GFF4100	0.72	-1.9
4,119,809	-		GFF4100	0.72	-0.2
4,119,809	-		GFF4100	0.72	-0.2
4,119,809	-		GFF4100	0.72	+0.2
4,119,809	-		GFF4100	0.72	-0.5
4,119,809	-		GFF4100	0.72	-2.5
4,119,811	+		GFF4100	0.72	+0.6
4,119,836	+		GFF4100	0.74	+1.7
4,119,841	+		GFF4100	0.74	-1.9
4,119,841	+		GFF4100	0.74	-1.0
4,119,841	+		GFF4100	0.74	-0.6
4,119,844	-		GFF4100	0.74	-0.5
4,119,849	-		GFF4100	0.75	-0.0
4,119,849	-		GFF4100	0.75	-0.2
4,119,858	-		GFF4100	0.75	+1.2
4,119,862	-		GFF4100	0.76	+0.3
4,119,879	+		GFF4100	0.77	-0.3
4,119,889	+		GFF4100	0.77	-0.4
4,119,889	+		GFF4100	0.77	+0.0
4,119,889	+		GFF4100	0.77	-0.8
4,119,889	+		GFF4100	0.77	+1.1
4,119,889	+		GFF4100	0.77	-0.9
4,119,889	+		GFF4100	0.77	-0.1
4,119,889	+		GFF4100	0.77	+0.6
4,119,894	+		GFF4100	0.78	-0.4
4,119,894	+		GFF4100	0.78	+0.9
4,119,894	+		GFF4100	0.78	-0.5
4,119,894	+		GFF4100	0.78	+1.2
4,119,897	-		GFF4100	0.78	+1.4
4,119,897	-		GFF4100	0.78	-1.5
4,119,897	-		GFF4100	0.78	+0.0
4,119,897	-		GFF4100	0.78	-0.9
4,119,897	-		GFF4100	0.78	-0.0
4,119,899	+		GFF4100	0.78	+0.3
4,119,899	+		GFF4100	0.78	-0.3
4,119,899	+		GFF4100	0.78	-0.2
4,119,899	+		GFF4100	0.78	-1.1
4,119,899	+		GFF4100	0.78	-0.2
4,119,899	+		GFF4100	0.78	-1.2
4,119,899	+		GFF4100	0.78	+0.8
4,119,899	+		GFF4100	0.78	-0.1
4,119,899	+		GFF4100	0.78	-2.1
4,119,899	+		GFF4100	0.78	-1.5
4,119,902	-		GFF4100	0.78	-0.0
4,119,907	-		GFF4100	0.79	+0.2
4,119,907	-		GFF4100	0.79	+0.2
4,119,907	-		GFF4100	0.79	+0.6
4,119,907	-		GFF4100	0.79	+1.0
4,119,907	-		GFF4100	0.79	+1.0
4,119,907	-		GFF4100	0.79	-1.5
4,119,907	-		GFF4100	0.79	-0.1
4,119,907	-		GFF4100	0.79	-1.2
4,119,907	-		GFF4100	0.79	-0.0
4,119,907	-		GFF4100	0.79	+0.3
4,119,907	-		GFF4100	0.79	+1.0
4,119,907	-		GFF4100	0.79	+0.1
4,119,907	-		GFF4100	0.79	-0.5
4,119,917	-		GFF4100	0.79	+0.5
4,119,922	+		GFF4100	0.80	-1.0
4,119,922	+		GFF4100	0.80	-0.6
4,119,922	+		GFF4100	0.80	+0.8
4,119,927	+		GFF4100	0.80	-0.4
4,119,950	+		GFF4100	0.81	+0.6
4,119,953	-		GFF4100	0.82	-0.5
4,119,998	+		GFF4100	0.85	-2.6
4,120,014	+		GFF4100	0.86	+0.6
4,120,014	+		GFF4100	0.86	-0.8
4,120,022	-		GFF4100	0.86	-0.2
4,120,022	-		GFF4100	0.86	+1.7
4,120,022	-		GFF4100	0.86	+0.0
4,120,029	-		GFF4100	0.87	+0.9
4,120,033	+		GFF4100	0.87	-0.2
4,120,033	+		GFF4100	0.87	-0.2
4,120,033	-		GFF4100	0.87	+0.2
4,120,033	-		GFF4100	0.87	-0.3
4,120,041	-		GFF4100	0.87	-0.1
4,120,041	-		GFF4100	0.87	-1.1
4,120,041	-		GFF4100	0.87	-2.0
4,120,057	+		GFF4100	0.88	+0.8
4,120,057	+		GFF4100	0.88	+0.8
4,120,057	+		GFF4100	0.88	+0.7
4,120,057	+		GFF4100	0.88	+0.6
4,120,065	-		GFF4100	0.89	-1.4
4,120,065	-		GFF4100	0.89	-1.5
4,120,092	-				+0.7
4,120,092	-				+0.8
4,120,092	-				+0.7
4,120,094	+				-1.4
4,120,102	-				+0.9
4,120,102	-				-1.0
4,120,102	-				-1.5
4,120,110	-				-0.5
4,120,129	+				+1.2
4,120,129	+				-2.8
4,120,137	-				+0.1
4,120,168	+				+0.4
4,120,180	-				-0.3
4,120,183	+				-2.2
4,120,190	-				+0.8
4,120,195	+				+0.3
4,120,203	-				-0.4
4,120,203	-				-1.0
4,120,222	+				+0.2
4,120,238	+				-1.2
4,120,238	+				+0.3
4,120,246	-				-1.4
4,120,246	-				+0.6
4,120,256	+				-1.7
4,120,261	+				+1.2
4,120,264	-				+0.7
4,120,264	-				+0.4
4,120,266	+				+0.3
4,120,269	-				-0.9
4,120,269	-				-2.7
4,120,271	+				-2.0
4,120,271	+				-1.8
4,120,284	+				-1.4
4,120,284	+				+0.7
4,120,308	-				+0.7
4,120,313	-				-0.5
4,120,333	+				-0.9
4,120,334	+				-0.3
4,120,351	+				-0.0
4,120,352	+				-0.8
4,120,355	-				-1.6
4,120,368	+				-0.2
4,120,368	+				-0.2
4,120,368	+				-0.3
4,120,376	-				+0.5
4,120,376	-				+0.1
4,120,376	-				-1.2
4,120,376	-				-2.0
4,120,376	-				-0.4
4,120,389	+				-0.6
4,120,393	+				-0.6
4,120,407	+				+0.7
4,120,415	-		GFF4101	0.10	-1.5
4,120,416	+		GFF4101	0.10	+0.4
4,120,416	+		GFF4101	0.10	+0.1
4,120,416	+		GFF4101	0.10	+0.3
4,120,420	-		GFF4101	0.10	-1.3
4,120,422	+		GFF4101	0.11	+0.8
4,120,422	+		GFF4101	0.11	-2.3
4,120,422	+		GFF4101	0.11	+0.1
4,120,430	-		GFF4101	0.11	+0.9
4,120,435	-		GFF4101	0.12	-1.4
4,120,436	+		GFF4101	0.12	+0.7
4,120,442	+		GFF4101	0.12	+0.5
4,120,445	-		GFF4101	0.12	-0.5
4,120,448	+		GFF4101	0.12	+0.3
4,120,453	+		GFF4101	0.13	-1.4
4,120,456	-		GFF4101	0.13	-1.5
4,120,458	+		GFF4101	0.13	+0.7
4,120,475	-		GFF4101	0.14	-0.1
4,120,483	+		GFF4101	0.15	-1.3
4,120,498	-		GFF4101	0.16	+1.0
4,120,509	+		GFF4101	0.17	-0.8
4,120,514	+		GFF4101	0.17	-0.5
4,120,517	-		GFF4101	0.17	+1.1
4,120,525	+		GFF4101	0.18	+1.1
4,120,533	+		GFF4101	0.19	+0.1
4,120,535	-		GFF4101	0.19	+0.6
4,120,541	-		GFF4101	0.19	+0.4
4,120,557	+		GFF4101	0.20	+0.3
4,120,560	+		GFF4101	0.20	+0.5
4,120,560	+		GFF4101	0.20	+0.1
4,120,560	+		GFF4101	0.20	+0.6
4,120,560	+		GFF4101	0.20	+0.2
4,120,560	+		GFF4101	0.20	-0.2
4,120,560	-		GFF4101	0.20	-0.8
4,120,560	-		GFF4101	0.20	+0.1
4,120,565	-		GFF4101	0.21	+0.3
4,120,565	-		GFF4101	0.21	-1.4
4,120,568	-		GFF4101	0.21	+0.9
4,120,568	-		GFF4101	0.21	-2.4
4,120,568	-		GFF4101	0.21	-1.8
4,120,568	-		GFF4101	0.21	-0.3
4,120,570	+		GFF4101	0.21	-1.0
4,120,578	+		GFF4101	0.22	+0.2
4,120,578	-		GFF4101	0.22	+0.3
4,120,578	-		GFF4101	0.22	-0.4
4,120,594	+		GFF4101	0.23	+0.1
4,120,594	+		GFF4101	0.23	-1.2
4,120,609	+		GFF4101	0.24	-2.0
4,120,611	+		GFF4101	0.24	-0.3
4,120,617	-		GFF4101	0.25	+0.8
4,120,617	-		GFF4101	0.25	-0.9
4,120,673	+		GFF4101	0.28	-0.4
4,120,673	+		GFF4101	0.28	+1.1
4,120,673	+		GFF4101	0.28	+0.0
4,120,673	+		GFF4101	0.28	-2.5
4,120,683	+		GFF4101	0.29	-1.7
4,120,683	+		GFF4101	0.29	-0.4
4,120,691	-		GFF4101	0.30	-1.0
4,120,691	-		GFF4101	0.30	-1.6
4,120,691	-		GFF4101	0.30	+0.9
4,120,720	+		GFF4101	0.32	-0.8
4,120,726	-		GFF4101	0.32	-0.0
4,120,728	+		GFF4101	0.32	+0.8
4,120,730	+		GFF4101	0.33	+0.0
4,120,736	-		GFF4101	0.33	-0.5
4,120,755	+		GFF4101	0.34	+0.4
4,120,784	+		GFF4101	0.36	-1.1
4,120,786	-		GFF4101	0.37	+0.6
4,120,794	-		GFF4101	0.37	+0.1
4,120,807	-		GFF4101	0.38	+1.2
4,120,856	+		GFF4101	0.42	-0.4
4,120,856	+		GFF4101	0.42	+1.3
4,120,864	-		GFF4101	0.42	+0.5
4,120,864	-		GFF4101	0.42	-1.0
4,120,864	-		GFF4101	0.42	-1.3
4,120,890	+		GFF4101	0.44	-1.0
4,120,895	+		GFF4101	0.44	+1.1
4,120,900	+		GFF4101	0.45	+0.5
4,120,903	-		GFF4101	0.45	+0.5
4,120,903	-		GFF4101	0.45	+0.4
4,120,919	+		GFF4101	0.46	-0.2
4,120,927	-		GFF4101	0.47	-0.4
4,120,936	+		GFF4101	0.47	+1.1
4,120,943	-		GFF4101	0.48	-0.5
4,120,944	-		GFF4101	0.48	-0.6
4,120,993	+		GFF4101	0.51	-1.6
4,120,993	+		GFF4101	0.51	-0.8
4,120,993	+		GFF4101	0.51	+0.3
4,120,993	+		GFF4101	0.51	-0.6
4,121,001	-		GFF4101	0.52	-1.0
4,121,001	-		GFF4101	0.52	-1.8
4,121,001	-		GFF4101	0.52	+0.6
4,121,001	-		GFF4101	0.52	-0.0
4,121,014	-		GFF4101	0.53	+0.6
4,121,017	+		GFF4101	0.53	+0.4
4,121,022	+		GFF4101	0.53	-0.8
4,121,027	+		GFF4101	0.54	-1.4
4,121,027	+		GFF4101	0.54	-1.3
4,121,027	+		GFF4101	0.54	-2.6
4,121,027	+		GFF4101	0.54	+0.3
4,121,030	-		GFF4101	0.54	+0.1
4,121,030	-		GFF4101	0.54	-1.9
4,121,032	+		GFF4101	0.54	-0.7
4,121,035	-		GFF4101	0.54	-1.0
4,121,035	-		GFF4101	0.54	-0.2
4,121,035	-		GFF4101	0.54	-0.7
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4,121,060	+		GFF4101	0.56	+0.3
4,121,060	+		GFF4101	0.56	-1.8
4,121,068	-		GFF4101	0.57	-1.2
4,121,068	-		GFF4101	0.57	+0.3
4,121,070	+		GFF4101	0.57	+0.8
4,121,093	+		GFF4101	0.58	-1.0
4,121,099	-		GFF4101	0.59	-1.6
4,121,127	+		GFF4101	0.61	-0.3
4,121,134	-		GFF4101	0.61	-0.0
4,121,140	-		GFF4101	0.62	-1.5
4,121,155	-		GFF4101	0.63	+0.1
4,121,167	+		GFF4101	0.64	-1.1
4,121,167	+		GFF4101	0.64	+0.1
4,121,184	+		GFF4101	0.65	-0.3
4,121,184	+		GFF4101	0.65	-1.9
4,121,184	+		GFF4101	0.65	-1.0
4,121,184	+		GFF4101	0.65	-1.2
4,121,186	-		GFF4101	0.65	-0.6
4,121,188	-		GFF4101	0.65	-0.7
4,121,192	-		GFF4101	0.65	-0.6
4,121,208	-		GFF4101	0.67	-1.0
4,121,223	+		GFF4101	0.68	-0.4
4,121,223	+		GFF4101	0.68	-2.4
4,121,226	-		GFF4101	0.68	+0.9
4,121,231	-		GFF4101	0.68	-0.0
4,121,241	-		GFF4101	0.69	+0.8
4,121,310	+		GFF4101	0.74	+0.5
4,121,327	+		GFF4101	0.75	+0.6
4,121,333	+		GFF4101	0.75	-1.1
4,121,333	+		GFF4101	0.75	-0.7
4,121,341	-		GFF4101	0.76	-0.5
4,121,341	-		GFF4101	0.76	-0.2
4,121,342	+		GFF4101	0.76	-1.8
4,121,349	+		GFF4101	0.77	-0.4
4,121,357	-		GFF4101	0.77	+0.8
4,121,358	+		GFF4101	0.77	-1.0
4,121,363	+		GFF4101	0.78	-1.2
4,121,376	-		GFF4101	0.79	+1.2
4,121,377	-		GFF4101	0.79	+0.1
4,121,384	+		GFF4101	0.79	-0.9
4,121,384	+		GFF4101	0.79	-2.2
4,121,389	+		GFF4101	0.79	-1.2
4,121,392	-		GFF4101	0.80	+0.4
4,121,392	-		GFF4101	0.80	+0.9
4,121,432	+		GFF4101	0.83	+0.3
4,121,456	+		GFF4101	0.84	-0.1
4,121,456	+		GFF4101	0.84	-0.9
4,121,456	+		GFF4101	0.84	-0.1
4,121,464	-		GFF4101	0.85	+0.2
4,121,519	-		GFF4101	0.89	+1.0
4,121,528	+		GFF4101	0.89	-1.2
4,121,549	+				-0.4
4,121,557	-				-1.5
4,121,557	-				-1.7
4,121,557	-				-0.8
4,121,573	-				-0.2
4,121,575	+				+0.5
4,121,575	+				+0.7
4,121,575	+				+1.1
4,121,575	+				+1.2
4,121,578	-				+0.0
4,121,583	-				-0.0
4,121,583	-				-0.8
4,121,583	-				-0.7
4,121,607	-				+1.0
4,121,611	+				+0.6
4,121,614	-				-0.3
4,121,614	-				+0.3
4,121,624	-				-0.5
4,121,624	-				+0.4
4,121,624	-				-0.3
4,121,624	-				-0.2
4,121,624	-				+0.4
4,121,624	-				-0.0
4,121,624	-				+0.4
4,121,643	+				-0.5
4,121,643	-				+1.1
4,121,647	-				-1.6
4,121,651	-				-0.1
4,121,651	-				+0.7
4,121,654	+				-0.1
4,121,661	+				+0.4
4,121,669	+				-2.0
4,121,677	-				-0.5
4,121,677	-				-0.8
4,121,689	+				+0.3
4,121,704	+				+1.1
4,121,712	-				+0.3
4,121,717	-				-0.0
4,121,758	-				+0.6
4,121,763	-				+0.2
4,121,776	+				-0.4
4,121,781	+				-2.6
4,121,790	-				-0.1
4,121,814	-				-1.3
4,121,856	+				+0.8
4,121,863	+				-0.5
4,121,869	-				+0.9
4,121,946	+		GFF4102	0.20	-1.9
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4,121,953	+		GFF4102	0.20	+0.7
4,121,955	-		GFF4102	0.21	-1.6
4,121,965	+		GFF4102	0.22	+0.2
4,121,971	-		GFF4102	0.23	-1.2
4,122,013	+		GFF4102	0.28	-0.6
4,122,023	+		GFF4102	0.30	+0.5
4,122,031	-		GFF4102	0.31	-1.7
4,122,057	-		GFF4102	0.34	-0.1
4,122,057	-		GFF4102	0.34	-0.4
4,122,158	+		GFF4102	0.47	+0.4
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4,122,197	+		GFF4102	0.52	-0.5
4,122,197	+		GFF4102	0.52	-0.0
4,122,197	+		GFF4102	0.52	+1.6
4,122,197	+		GFF4102	0.52	-0.1
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4,122,220	-		GFF4102	0.55	-0.5
4,122,220	-		GFF4102	0.55	-1.1
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4,122,240	-		GFF4102	0.58	+0.2
4,122,240	-		GFF4102	0.58	-0.2
4,122,612	-				-0.4
4,122,621	+				-0.8
4,122,629	-				-1.9
4,122,636	-				+0.5
4,122,636	-				-1.9
4,122,650	+				-0.2
4,122,654	-				-1.4
4,122,654	-				+0.0
4,122,654	-				-0.5