Strain Fitness in Sphingobium sp. HT1-2 around GFF4061

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,075,075	+		GFF4059	0.21	-0.4
4,075,075	+		GFF4059	0.21	-0.3
4,075,075	+		GFF4059	0.21	-0.0
4,075,080	+		GFF4059	0.22	-1.8
4,075,081	+		GFF4059	0.22	+0.3
4,075,081	+		GFF4059	0.22	-0.8
4,075,081	+		GFF4059	0.22	-1.3
4,075,088	-		GFF4059	0.23	-0.4
4,075,089	-		GFF4059	0.23	-2.0
4,075,089	-		GFF4059	0.23	-1.7
4,075,089	-		GFF4059	0.23	-1.1
4,075,089	-		GFF4059	0.23	+0.2
4,075,089	-		GFF4059	0.23	+0.6
4,075,089	-		GFF4059	0.23	-0.6
4,075,089	-		GFF4059	0.23	-1.0
4,075,089	-		GFF4059	0.23	-0.2
4,075,089	-		GFF4059	0.23	+1.4
4,075,134	+		GFF4059	0.32	+0.7
4,075,142	-		GFF4059	0.33	-1.4
4,075,142	-		GFF4059	0.33	-1.8
4,075,144	+		GFF4059	0.34	-0.4
4,075,147	-		GFF4059	0.34	-0.5
4,075,170	+		GFF4059	0.38	-1.0
4,075,170	+		GFF4059	0.38	-0.6
4,075,178	-		GFF4059	0.40	+0.3
4,075,178	-		GFF4059	0.40	-0.4
4,075,185	-		GFF4059	0.41	-0.4
4,075,192	-		GFF4059	0.42	+1.2
4,075,209	-		GFF4059	0.45	-0.9
4,075,271	+		GFF4059	0.57	-1.2
4,075,279	-		GFF4059	0.58	-0.3
4,075,283	+		GFF4059	0.59	-0.2
4,075,308	-		GFF4059	0.63	-1.0
4,075,315	+		GFF4059	0.65	-0.1
4,075,332	+		GFF4059	0.68	-0.4
4,075,332	+		GFF4059	0.68	-0.1
4,075,332	+		GFF4059	0.68	-0.5
4,075,340	-		GFF4059	0.69	+1.6
4,075,340	-		GFF4059	0.69	-0.7
4,075,341	+		GFF4059	0.69	-0.4
4,075,349	-		GFF4059	0.71	-0.6
4,075,397	-		GFF4059	0.80	+1.4
4,075,397	-		GFF4059	0.80	+0.5
4,075,402	-		GFF4059	0.81	-0.1
4,075,412	-		GFF4059	0.82	-0.4
4,075,425	+		GFF4059	0.85	+0.0
4,075,425	+		GFF4059	0.85	-0.6
4,075,425	+		GFF4059	0.85	+0.5
4,075,425	+		GFF4059	0.85	-0.0
4,075,425	+		GFF4059	0.85	+1.4
4,075,425	+		GFF4059	0.85	-1.0
4,075,425	+		GFF4059	0.85	-0.4
4,075,425	+		GFF4059	0.85	+0.6
4,075,425	+		GFF4059	0.85	-1.4
4,075,425	+		GFF4059	0.85	-0.1
4,075,433	-		GFF4059	0.86	+0.3
4,075,433	-		GFF4059	0.86	-0.9
4,075,433	-		GFF4059	0.86	+1.1
4,075,433	-		GFF4059	0.86	-0.3
4,075,433	-		GFF4059	0.86	-0.7
4,075,433	-		GFF4059	0.86	-0.4
4,075,433	-		GFF4059	0.86	-0.4
4,075,433	-		GFF4059	0.86	+0.3
4,075,440	+		GFF4059	0.87	-0.8
4,075,464	+				-0.7
4,075,517	+				-0.2
4,075,517	+				+1.4
4,075,517	+				+1.8
4,075,517	+				+0.3
4,075,517	+				+0.8
4,075,535	+				-0.4
4,075,540	+				-0.2
4,075,540	+				-0.2
4,075,543	-				+0.2
4,075,543	-				+0.2
4,075,548	-				-1.4
4,075,552	-				-0.4
4,075,576	+		GFF4060	0.15	+0.2
4,075,602	-		GFF4060	0.20	-0.9
4,075,606	+		GFF4060	0.21	-0.0
4,075,619	-		GFF4060	0.23	-0.7
4,075,624	+		GFF4060	0.24	+1.1
4,075,630	+		GFF4060	0.26	-0.2
4,075,668	-		GFF4060	0.34	-1.1
4,075,670	+		GFF4060	0.34	+0.1
4,075,670	+		GFF4060	0.34	-0.7
4,075,670	+		GFF4060	0.34	-0.6
4,075,675	+		GFF4060	0.35	-0.7
4,075,677	-		GFF4060	0.35	-0.0
4,075,678	-		GFF4060	0.36	-2.8
4,075,678	-		GFF4060	0.36	+0.3
4,075,683	-		GFF4060	0.37	-0.9
4,075,683	-		GFF4060	0.37	-1.8
4,075,693	+		GFF4060	0.39	-0.7
4,075,693	+		GFF4060	0.39	-0.3
4,075,693	+		GFF4060	0.39	-1.2
4,075,693	+		GFF4060	0.39	-1.4
4,075,693	+		GFF4060	0.39	+1.5
4,075,693	+		GFF4060	0.39	-1.2
4,075,693	+		GFF4060	0.39	-1.2
4,075,693	+		GFF4060	0.39	-1.2
4,075,693	+		GFF4060	0.39	-0.1
4,075,693	+		GFF4060	0.39	-0.0
4,075,693	+		GFF4060	0.39	-0.6
4,075,701	-		GFF4060	0.40	+0.9
4,075,701	-		GFF4060	0.40	-1.8
4,075,701	-		GFF4060	0.40	-1.5
4,075,701	-		GFF4060	0.40	-1.6
4,075,701	-		GFF4060	0.40	+0.5
4,075,701	-		GFF4060	0.40	-1.4
4,075,701	-		GFF4060	0.40	-0.3
4,075,701	-		GFF4060	0.40	-0.2
4,075,742	+		GFF4060	0.49	+0.1
4,075,745	-		GFF4060	0.49	-1.1
4,075,750	-		GFF4060	0.50	+1.1
4,075,750	-		GFF4060	0.50	+0.5
4,075,761	+		GFF4060	0.53	-0.6
4,075,786	+		GFF4060	0.58	-0.7
4,075,794	-		GFF4060	0.59	-0.3
4,075,822	-		GFF4060	0.65	-0.7
4,075,832	-		GFF4060	0.67	-1.7
4,075,832	-		GFF4060	0.67	-0.2
4,075,832	-		GFF4060	0.67	-2.0
4,075,867	-		GFF4060	0.74	-2.9
4,075,869	+		GFF4060	0.75	+1.8
4,075,869	+		GFF4060	0.75	-0.0
4,075,874	+		GFF4060	0.76	+0.3
4,075,877	-		GFF4060	0.77	-0.1
4,075,877	-		GFF4060	0.77	-0.7
4,075,901	-		GFF4060	0.81	+0.3
4,075,919	+		GFF4060	0.85	+0.2
4,075,948	+				+1.6
4,075,950	+				-0.4
4,075,955	+				+0.6
4,075,974	-				-0.2
4,076,013	+				-0.4
4,076,022	-				-0.2
4,076,951	-				-1.4
4,076,986	-				-0.1
4,077,082	+				+1.5
4,077,100	-				+0.3
4,077,100	-				-0.7
4,077,124	+				+1.0
4,077,170	-		GFF4062	0.14	-0.2
4,077,217	-		GFF4062	0.19	+0.9
4,077,228	-		GFF4062	0.20	-1.5
4,077,248	+		GFF4062	0.22	-0.8
4,077,263	+		GFF4062	0.23	+0.5
4,077,263	+		GFF4062	0.23	-1.8
4,077,271	-		GFF4062	0.24	-0.9
4,077,331	-		GFF4062	0.30	-2.0
4,077,343	-		GFF4062	0.32	+0.4
4,077,354	-		GFF4062	0.33	+0.2
4,077,386	-		GFF4062	0.36	-0.3
4,077,396	+		GFF4062	0.37	-0.2
4,077,396	+		GFF4062	0.37	-0.6
4,077,404	-		GFF4062	0.38	+2.1
4,077,404	-		GFF4062	0.38	+1.4
4,077,404	-		GFF4062	0.38	-1.8
4,077,404	-		GFF4062	0.38	+0.8
4,077,404	-		GFF4062	0.38	+0.8
4,077,427	+		GFF4062	0.41	+0.2
4,077,449	+		GFF4062	0.43	-1.4
4,077,465	+		GFF4062	0.45	+1.3
4,077,465	+		GFF4062	0.45	-2.0
4,077,473	-		GFF4062	0.45	+0.5
4,077,473	-		GFF4062	0.45	-0.6
4,077,473	-		GFF4062	0.45	+1.4
4,077,473	-		GFF4062	0.45	-0.4
4,077,473	-		GFF4062	0.45	+1.3
4,077,483	-		GFF4062	0.46	-0.6
4,077,489	+		GFF4062	0.47	+0.1
4,077,497	-		GFF4062	0.48	-0.4
4,077,547	+		GFF4062	0.53	-0.6
4,077,547	+		GFF4062	0.53	+0.8
4,077,560	-		GFF4062	0.55	+0.9
4,077,624	-		GFF4062	0.61	+0.6
4,077,639	+		GFF4062	0.63	+0.7
4,077,639	+		GFF4062	0.63	+0.6
4,077,639	+		GFF4062	0.63	+1.1
4,077,647	-		GFF4062	0.64	+1.4
4,077,647	-		GFF4062	0.64	-0.6
4,077,681	+		GFF4062	0.67	+0.2
4,077,696	+		GFF4062	0.69	-1.3
4,077,704	-		GFF4062	0.70	+2.2
4,077,706	-		GFF4062	0.70	-1.5
4,077,744	+		GFF4062	0.74	+0.6
4,077,772	+		GFF4062	0.77	-1.1
4,077,787	+		GFF4062	0.78	+0.8
4,077,790	-		GFF4062	0.79	-0.5
4,077,795	+		GFF4062	0.79	-0.7
4,077,795	-		GFF4062	0.79	+0.4
4,077,803	-		GFF4062	0.80	+0.7
4,077,803	-		GFF4062	0.80	-0.8
4,077,811	+		GFF4062	0.81	+0.8
4,077,876	+		GFF4062	0.88	+0.8
4,077,876	+		GFF4062	0.88	+1.2
4,077,876	+		GFF4062	0.88	-0.3
4,077,884	-		GFF4062	0.89	+0.2
4,077,884	-		GFF4062	0.89	+1.2
4,077,919	+				-0.2
4,077,932	+				+1.0
4,077,941	+				+0.8
4,077,947	+				-0.1
4,077,949	-				+0.3