Strain Fitness in Sphingobium sp. HT1-2 around GFF3742

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,782,886	+		GFF3741	0.24	-0.9
3,782,908	+		GFF3741	0.26	+0.5
3,782,940	+		GFF3741	0.29	-2.5
3,782,940	+		GFF3741	0.29	-0.2
3,782,948	-		GFF3741	0.30	+0.8
3,782,948	-		GFF3741	0.30	-0.8
3,782,948	-		GFF3741	0.30	+2.3
3,782,948	-		GFF3741	0.30	+0.9
3,782,953	-		GFF3741	0.30	+0.5
3,782,983	-		GFF3741	0.33	-0.3
3,783,042	-		GFF3741	0.38	-0.3
3,783,048	+		GFF3741	0.38	-2.0
3,783,048	+		GFF3741	0.38	+0.3
3,783,056	-		GFF3741	0.39	-0.3
3,783,056	-		GFF3741	0.39	-0.5
3,783,056	-		GFF3741	0.39	-0.4
3,783,056	-		GFF3741	0.39	+0.7
3,783,066	+		GFF3741	0.40	-2.1
3,783,073	-		GFF3741	0.41	-0.5
3,783,078	-		GFF3741	0.41	-0.7
3,783,078	-		GFF3741	0.41	-0.2
3,783,097	-		GFF3741	0.43	-0.7
3,783,107	-		GFF3741	0.44	-0.1
3,783,108	-		GFF3741	0.44	-0.8
3,783,132	+		GFF3741	0.46	+0.7
3,783,132	+		GFF3741	0.46	-0.5
3,783,132	+		GFF3741	0.46	-1.4
3,783,140	-		GFF3741	0.47	-0.4
3,783,140	-		GFF3741	0.47	-0.0
3,783,140	-		GFF3741	0.47	+0.3
3,783,140	-		GFF3741	0.47	-0.5
3,783,140	-		GFF3741	0.47	-0.2
3,783,140	-		GFF3741	0.47	+0.1
3,783,140	-		GFF3741	0.47	-0.3
3,783,140	-		GFF3741	0.47	+0.4
3,783,142	+		GFF3741	0.47	-0.4
3,783,145	-		GFF3741	0.47	+1.5
3,783,152	-		GFF3741	0.48	+0.4
3,783,186	+		GFF3741	0.51	+0.5
3,783,186	+		GFF3741	0.51	+0.9
3,783,191	+		GFF3741	0.51	-0.1
3,783,199	-		GFF3741	0.52	-1.5
3,783,288	+		GFF3741	0.60	-1.5
3,783,288	+		GFF3741	0.60	+0.7
3,783,291	-		GFF3741	0.60	+0.2
3,783,294	+		GFF3741	0.60	+0.3
3,783,296	-		GFF3741	0.60	-1.3
3,783,296	-		GFF3741	0.60	+1.0
3,783,296	-		GFF3741	0.60	-1.0
3,783,296	-		GFF3741	0.60	-1.7
3,783,311	+		GFF3741	0.62	-0.1
3,783,334	+		GFF3741	0.64	-0.6
3,783,334	+		GFF3741	0.64	+1.4
3,783,361	+		GFF3741	0.66	+1.3
3,783,361	+		GFF3741	0.66	-0.6
3,783,361	-		GFF3741	0.66	+0.6
3,783,369	-		GFF3741	0.67	-0.5
3,783,369	-		GFF3741	0.67	+0.5
3,783,369	-		GFF3741	0.67	-1.2
3,783,369	-		GFF3741	0.67	+0.5
3,783,369	-		GFF3741	0.67	+1.1
3,783,369	-		GFF3741	0.67	+0.2
3,783,386	+		GFF3741	0.68	-0.7
3,783,396	+		GFF3741	0.69	+0.7
3,783,396	+		GFF3741	0.69	+0.1
3,783,399	-		GFF3741	0.69	+1.1
3,783,404	-		GFF3741	0.70	+0.5
3,783,404	-		GFF3741	0.70	-1.8
3,783,410	+		GFF3741	0.70	-0.5
3,783,416	+		GFF3741	0.71	+0.5
3,783,425	-		GFF3741	0.72	-0.4
3,783,439	-		GFF3741	0.73	-0.4
3,783,441	+		GFF3741	0.73	-0.0
3,783,441	+		GFF3741	0.73	-0.1
3,783,443	-		GFF3741	0.73	-1.5
3,783,449	+		GFF3741	0.74	-0.1
3,783,449	-		GFF3741	0.74	-1.4
3,783,449	-		GFF3741	0.74	+1.2
3,783,471	+		GFF3741	0.76	+0.1
3,783,486	-		GFF3741	0.77	-1.3
3,783,488	+		GFF3741	0.77	-0.9
3,783,488	+		GFF3741	0.77	-0.4
3,783,488	+		GFF3741	0.77	+0.7
3,783,496	-		GFF3741	0.78	+0.1
3,783,496	-		GFF3741	0.78	-1.2
3,783,496	-		GFF3741	0.78	-0.0
3,783,496	-		GFF3741	0.78	+0.1
3,783,496	-		GFF3741	0.78	-1.4
3,783,528	+		GFF3741	0.81	-0.0
3,783,539	+		GFF3741	0.82	-0.9
3,783,549	+		GFF3741	0.82	+1.5
3,783,554	+		GFF3741	0.83	+0.1
3,783,562	-		GFF3741	0.84	-1.7
3,783,562	-		GFF3741	0.84	-0.2
3,783,562	-		GFF3741	0.84	-0.2
3,783,574	+		GFF3741	0.85	+0.8
3,783,576	+		GFF3741	0.85	+0.1
3,783,584	-		GFF3741	0.86	+0.3
3,783,586	-		GFF3741	0.86	+0.1
3,783,586	-		GFF3741	0.86	-0.7
3,783,613	+		GFF3741	0.88	-0.5
3,783,623	-		GFF3741	0.89	-0.3
3,783,623	-		GFF3741	0.89	-0.3
3,783,637	+				+0.5
3,783,637	+				-0.6
3,783,637	+				-0.8
3,783,637	+				-0.3
3,783,637	+				-0.7
3,783,637	+				+1.1
3,783,637	+				+1.0
3,783,637	+				-0.3
3,783,637	+				-0.4
3,783,640	-				-0.1
3,783,645	-				-1.5
3,783,645	-				+0.6
3,783,645	-				-1.5
3,783,645	-				+1.0
3,783,645	-				-1.9
3,783,645	-				-1.9
3,783,645	-				-1.1
3,783,651	-				+0.1
3,783,691	+				+0.3
3,783,693	+				+0.3
3,783,820	-				-0.0
3,783,828	+				+0.9
3,783,828	+				+1.3
3,783,828	+				-0.8
3,783,839	+				-0.5
3,783,840	+				+0.2
3,783,841	+				-0.6
3,783,841	+				+0.1
3,783,849	-				-0.4
3,783,905	-				-0.1
3,783,918	+		GFF3742	0.12	-0.3
3,783,944	+		GFF3742	0.18	-0.7
3,783,949	-		GFF3742	0.19	-1.7
3,783,959	+		GFF3742	0.21	-1.6
3,783,974	+		GFF3742	0.24	+0.2
3,783,974	+		GFF3742	0.24	-2.3
3,783,974	+		GFF3742	0.24	+1.4
3,783,977	-		GFF3742	0.25	-0.7
3,783,982	-		GFF3742	0.26	+0.1
3,783,982	-		GFF3742	0.26	-0.6
3,784,011	-		GFF3742	0.32	-0.5
3,784,012	+		GFF3742	0.32	+0.0
3,784,043	-		GFF3742	0.39	+1.3
3,784,075	+		GFF3742	0.45	+1.6
3,784,075	+		GFF3742	0.45	+0.6
3,784,103	-		GFF3742	0.51	-1.8
3,784,116	+		GFF3742	0.54	-1.4
3,784,116	+		GFF3742	0.54	-0.6
3,784,116	+		GFF3742	0.54	+0.7
3,784,116	+		GFF3742	0.54	+1.0
3,784,116	+		GFF3742	0.54	+0.9
3,784,117	+		GFF3742	0.54	-1.0
3,784,119	-		GFF3742	0.54	-1.4
3,784,124	-		GFF3742	0.55	-2.7
3,784,155	+		GFF3742	0.62	+0.5
3,784,155	+		GFF3742	0.62	-0.8
3,784,176	+		GFF3742	0.66	-0.8
3,784,181	+		GFF3742	0.67	+0.0
3,784,216	+		GFF3742	0.75	-0.4
3,784,233	+		GFF3742	0.78	+1.0
3,784,236	-		GFF3742	0.79	+0.6
3,784,238	+		GFF3742	0.79	-0.3
3,784,246	-		GFF3742	0.81	+2.2
3,784,259	+		GFF3742	0.84	+0.1
3,784,264	+		GFF3742	0.85	-0.7
3,784,272	-		GFF3742	0.86	-0.4
3,784,278	+		GFF3742	0.88	+1.0
3,784,278	+		GFF3742	0.88	-1.5
3,784,286	-		GFF3742	0.89	-1.4
3,784,286	-		GFF3742	0.89	-1.2
3,784,291	-				-2.0
3,784,295	+				-1.3
3,784,303	+				-1.2
3,784,309	+				+0.3
3,784,309	+				+0.0
3,784,309	+				+0.5
3,784,311	-				-0.5
3,784,336	+				-1.1
3,784,336	+				+0.7
3,784,351	-				-0.6
3,784,435	+				-2.4
3,784,435	+				-0.0
3,784,435	+				-1.9
3,784,435	+				-1.2
3,784,435	+				+1.4
3,784,435	+				+1.0
3,784,438	-				-0.1
3,784,438	-				-0.8
3,784,443	-				-1.5
3,784,443	-				+0.3
3,784,443	-				-0.6
3,784,443	-				-1.2
3,784,460	+				-1.1
3,784,476	+				+0.7
3,784,517	+				-0.6
3,784,517	+				-2.0
3,784,521	+				-1.3
3,784,525	-				+1.7
3,784,525	-				-0.7
3,784,526	+				-0.9
3,784,526	+				-0.2
3,784,526	+				+0.9
3,784,529	-				-1.3
3,784,531	+				-0.8
3,784,534	-				-1.3
3,784,534	-				-1.0
3,784,534	-				-1.8
3,784,534	-				-0.7
3,784,534	-				-1.3
3,784,539	-				+1.5
3,784,539	-				-0.4
3,784,542	+				-0.6
3,784,542	+				+0.1
3,784,544	-				-0.4
3,784,550	-				-2.1
3,784,550	-				+0.7
3,784,565	-				-1.0
3,784,569	+				+1.1
3,784,577	-				-1.7
3,784,577	-				-0.3
3,784,582	+		GFF3743	0.10	-0.3
3,784,609	+		GFF3743	0.12	-0.5
3,784,628	+		GFF3743	0.13	-0.6
3,784,628	+		GFF3743	0.13	-0.6
3,784,636	-		GFF3743	0.14	+2.0
3,784,646	+		GFF3743	0.15	-1.6
3,784,646	+		GFF3743	0.15	-1.0
3,784,646	+		GFF3743	0.15	+0.9
3,784,646	+		GFF3743	0.15	+0.1
3,784,648	+		GFF3743	0.15	-2.2
3,784,651	+		GFF3743	0.15	-0.5
3,784,651	+		GFF3743	0.15	-0.8
3,784,651	+		GFF3743	0.15	-0.6
3,784,651	+		GFF3743	0.15	+0.5
3,784,651	+		GFF3743	0.15	+0.2
3,784,654	-		GFF3743	0.15	-1.0
3,784,654	-		GFF3743	0.15	+1.1
3,784,659	-		GFF3743	0.16	-1.3
3,784,659	-		GFF3743	0.16	+1.2
3,784,663	+		GFF3743	0.16	-0.7
3,784,673	+		GFF3743	0.17	-1.1
3,784,694	-		GFF3743	0.18	-0.8
3,784,702	+		GFF3743	0.19	-0.2
3,784,702	+		GFF3743	0.19	+0.5
3,784,710	-		GFF3743	0.19	+0.2
3,784,710	-		GFF3743	0.19	-0.6
3,784,710	-		GFF3743	0.19	+0.1
3,784,805	+		GFF3743	0.26	+0.9
3,784,813	-		GFF3743	0.26	+0.8
3,784,843	-		GFF3743	0.29	-0.4
3,784,873	+		GFF3743	0.31	-0.5
3,784,917	+		GFF3743	0.34	+0.8
3,784,925	-		GFF3743	0.34	+1.4
3,784,927	+		GFF3743	0.35	-1.8
3,784,935	-		GFF3743	0.35	-1.4
3,784,958	-		GFF3743	0.37	-1.0
3,784,969	-		GFF3743	0.38	+0.4
3,784,977	+		GFF3743	0.38	-0.2
3,784,977	+		GFF3743	0.38	-0.5
3,784,977	+		GFF3743	0.38	-0.7
3,784,977	+		GFF3743	0.38	+0.1
3,784,977	+		GFF3743	0.38	+0.3
3,784,977	+		GFF3743	0.38	-0.7
3,784,977	+		GFF3743	0.38	+0.9
3,784,985	-		GFF3743	0.39	+0.9
3,784,985	-		GFF3743	0.39	-0.1
3,784,985	-		GFF3743	0.39	-1.7
3,784,985	-		GFF3743	0.39	-1.3
3,784,995	-		GFF3743	0.39	+0.5
3,785,000	+		GFF3743	0.40	+0.2
3,785,000	+		GFF3743	0.40	-0.6
3,785,002	+		GFF3743	0.40	-0.4
3,785,002	+		GFF3743	0.40	-0.9
3,785,010	-		GFF3743	0.40	-0.8
3,785,010	-		GFF3743	0.40	+1.0
3,785,038	-		GFF3743	0.42	+1.3
3,785,071	-		GFF3743	0.45	-1.3
3,785,081	+		GFF3743	0.45	-1.3
3,785,086	-		GFF3743	0.46	-1.6
3,785,089	-		GFF3743	0.46	-1.0
3,785,089	-		GFF3743	0.46	-1.9
3,785,098	+		GFF3743	0.47	-0.2
3,785,100	+		GFF3743	0.47	+0.8
3,785,108	-		GFF3743	0.47	-0.4
3,785,136	-		GFF3743	0.49	-0.7
3,785,143	-		GFF3743	0.50	-0.4
3,785,145	-		GFF3743	0.50	-1.1
3,785,153	+		GFF3743	0.51	-0.2
3,785,153	+		GFF3743	0.51	+0.5
3,785,167	+		GFF3743	0.52	-0.3
3,785,192	-		GFF3743	0.53	-0.0
3,785,197	+		GFF3743	0.54	-2.0
3,785,216	+		GFF3743	0.55	+0.2
3,785,216	+		GFF3743	0.55	+0.7
3,785,216	+		GFF3743	0.55	-0.2
3,785,216	+		GFF3743	0.55	-0.6
3,785,216	+		GFF3743	0.55	-1.8
3,785,216	+		GFF3743	0.55	-0.5
3,785,224	-		GFF3743	0.56	-0.9
3,785,224	-		GFF3743	0.56	-1.5
3,785,224	-		GFF3743	0.56	-0.6
3,785,224	-		GFF3743	0.56	-0.2
3,785,231	+		GFF3743	0.56	-0.9
3,785,231	-		GFF3743	0.56	-0.3
3,785,237	-		GFF3743	0.56	+0.7
3,785,237	-		GFF3743	0.56	+0.5
3,785,237	-		GFF3743	0.56	+0.7
3,785,237	-		GFF3743	0.56	-0.2
3,785,239	+		GFF3743	0.57	-0.9
3,785,240	+		GFF3743	0.57	-1.1
3,785,247	-		GFF3743	0.57	+0.1
3,785,247	-		GFF3743	0.57	-0.3
3,785,263	+		GFF3743	0.58	-1.8
3,785,308	+		GFF3743	0.62	+0.6
3,785,308	+		GFF3743	0.62	+0.5
3,785,308	+		GFF3743	0.62	-0.1
3,785,311	-		GFF3743	0.62	-1.9
3,785,316	-		GFF3743	0.62	-0.7
3,785,316	-		GFF3743	0.62	-1.0
3,785,316	-		GFF3743	0.62	+0.1
3,785,316	-		GFF3743	0.62	-0.4