Strain Fitness in Sphingobium sp. HT1-2 around GFF3665

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,706,773	-		GFF3663	0.50	+1.6
3,706,800	+		GFF3663	0.52	+0.1
3,706,800	+		GFF3663	0.52	-1.3
3,706,802	+		GFF3663	0.52	+0.9
3,706,810	-		GFF3663	0.53	-0.2
3,706,813	-		GFF3663	0.53	-0.2
3,706,832	+		GFF3663	0.55	+0.1
3,706,832	+		GFF3663	0.55	+0.1
3,706,840	+		GFF3663	0.56	-0.1
3,706,840	-		GFF3663	0.56	-0.4
3,706,840	-		GFF3663	0.56	+1.1
3,706,848	-		GFF3663	0.56	-1.2
3,706,853	+		GFF3663	0.57	+0.7
3,706,883	-		GFF3663	0.60	-0.6
3,706,883	-		GFF3663	0.60	-0.9
3,706,916	+		GFF3663	0.63	-1.4
3,706,941	-		GFF3663	0.65	-0.6
3,706,959	-		GFF3663	0.67	+0.2
3,706,967	-		GFF3663	0.67	+0.2
3,706,978	-		GFF3663	0.68	-0.1
3,706,991	+		GFF3663	0.70	+0.1
3,706,999	+		GFF3663	0.70	+0.2
3,707,014	+		GFF3663	0.72	-0.5
3,707,014	+		GFF3663	0.72	-1.7
3,707,027	-		GFF3663	0.73	-1.7
3,707,034	+		GFF3663	0.74	-0.8
3,707,061	-		GFF3663	0.76	-0.5
3,707,115	-		GFF3663	0.81	-2.2
3,707,115	-		GFF3663	0.81	-1.7
3,707,131	+		GFF3663	0.82	-0.7
3,707,139	-		GFF3663	0.83	-0.5
3,707,154	-		GFF3663	0.85	-0.7
3,707,154	-		GFF3663	0.85	+0.4
3,707,221	-				+0.7
3,707,242	-				+0.3
3,707,285	-				-2.3
3,707,336	+				+0.1
3,707,349	+				-1.4
3,707,379	+				+0.4
3,707,401	+		GFF3664	0.13	+0.8
3,707,430	+		GFF3664	0.21	+2.4
3,707,437	+		GFF3664	0.23	-1.7
3,707,437	+		GFF3664	0.23	-0.3
3,707,445	-		GFF3664	0.25	+0.6
3,707,445	-		GFF3664	0.25	-0.4
3,707,459	+		GFF3664	0.29	-1.8
3,707,460	-		GFF3664	0.29	+0.7
3,707,484	-		GFF3664	0.36	-0.9
3,707,499	+		GFF3664	0.40	-1.3
3,707,500	+		GFF3664	0.40	-1.8
3,707,507	-		GFF3664	0.42	-0.7
3,707,527	+		GFF3664	0.48	-0.5
3,707,543	+		GFF3664	0.52	+1.2
3,707,543	+		GFF3664	0.52	-2.4
3,707,543	+		GFF3664	0.52	-0.4
3,707,543	+		GFF3664	0.52	-1.0
3,707,543	+		GFF3664	0.52	-0.7
3,707,543	+		GFF3664	0.52	-0.2
3,707,543	+		GFF3664	0.52	-1.6
3,707,543	+		GFF3664	0.52	-1.7
3,707,543	+		GFF3664	0.52	-1.5
3,707,543	+		GFF3664	0.52	-0.0
3,707,543	+		GFF3664	0.52	-0.4
3,707,543	+		GFF3664	0.52	-1.0
3,707,551	-		GFF3664	0.54	+0.3
3,707,551	-		GFF3664	0.54	-0.5
3,707,551	-		GFF3664	0.54	-1.0
3,707,551	-		GFF3664	0.54	+0.2
3,707,589	+		GFF3664	0.64	-1.5
3,707,620	+		GFF3664	0.73	-1.0
3,707,636	-		GFF3664	0.77	+0.8
3,707,639	+		GFF3664	0.78	-0.5
3,707,653	+		GFF3664	0.82	+0.6
3,707,661	-		GFF3664	0.84	-0.5
3,707,661	-		GFF3664	0.84	+1.1
3,707,682	+				-0.5
3,707,692	-				-0.5
3,707,695	-				-0.1
3,707,697	-				+0.0
3,707,713	-				+0.3
3,707,718	+				+0.2
3,707,728	-				-0.2
3,707,763	-				-0.3
3,707,763	-				+1.4
3,707,772	+				+1.5
3,707,830	+				+0.4
3,707,836	+				-0.9
3,707,836	+				-0.8
3,707,861	-				-0.7
3,707,861	-				-1.0
3,707,875	+				-0.0
3,707,881	+		GFF3665	0.10	+0.1
3,707,882	+		GFF3665	0.10	+0.2
3,707,922	+		GFF3665	0.14	-0.3
3,707,941	+		GFF3665	0.16	-2.0
3,707,941	+		GFF3665	0.16	-0.6
3,707,941	+		GFF3665	0.16	-1.6
3,707,946	+		GFF3665	0.16	-1.3
3,707,946	+		GFF3665	0.16	-0.0
3,707,954	-		GFF3665	0.17	-0.4
3,707,954	-		GFF3665	0.17	-1.5
3,707,969	+		GFF3665	0.18	-2.1
3,707,974	+		GFF3665	0.19	-0.4
3,707,974	+		GFF3665	0.19	-0.7
3,708,019	+		GFF3665	0.23	-0.7
3,708,019	+		GFF3665	0.23	-1.2
3,708,019	+		GFF3665	0.23	+0.7
3,708,019	+		GFF3665	0.23	+1.3
3,708,019	+		GFF3665	0.23	-1.4
3,708,019	+		GFF3665	0.23	+0.3
3,708,027	-		GFF3665	0.24	+0.8
3,708,027	-		GFF3665	0.24	+1.3
3,708,027	-		GFF3665	0.24	+0.3
3,708,027	-		GFF3665	0.24	-0.1
3,708,053	+		GFF3665	0.26	+0.6
3,708,061	-		GFF3665	0.27	+0.3
3,708,061	-		GFF3665	0.27	-0.7
3,708,066	-		GFF3665	0.27	+0.6
3,708,066	-		GFF3665	0.27	-3.1
3,708,091	+		GFF3665	0.30	+0.4
3,708,281	-		GFF3665	0.48	-0.1
3,708,291	-		GFF3665	0.48	-0.3
3,708,335	+		GFF3665	0.53	+1.3
3,708,336	+		GFF3665	0.53	-1.0
3,708,356	-		GFF3665	0.55	+0.8
3,708,385	-		GFF3665	0.57	+0.8
3,708,388	+		GFF3665	0.58	-0.4
3,708,396	-		GFF3665	0.58	+1.0
3,708,424	-		GFF3665	0.61	-0.9
3,708,426	-		GFF3665	0.61	+1.2
3,708,435	+		GFF3665	0.62	-0.1
3,708,440	+		GFF3665	0.62	-0.4
3,708,450	+		GFF3665	0.63	+0.5
3,708,453	-		GFF3665	0.64	+1.3
3,708,495	-		GFF3665	0.68	+2.4
3,708,497	+		GFF3665	0.68	-2.7
3,708,516	+		GFF3665	0.69	+0.1
3,708,518	-		GFF3665	0.70	-1.6
3,708,524	-		GFF3665	0.70	-1.4
3,708,524	-		GFF3665	0.70	-1.8
3,708,557	+		GFF3665	0.73	+0.3
3,708,580	-		GFF3665	0.75	-0.4
3,708,604	+		GFF3665	0.78	-0.8
3,708,609	-		GFF3665	0.78	+0.1
3,708,617	-		GFF3665	0.79	-0.0
3,708,619	-		GFF3665	0.79	+1.7
3,708,621	+		GFF3665	0.79	+0.1
3,708,631	+		GFF3665	0.80	+0.7
3,708,631	+		GFF3665	0.80	+0.9
3,708,631	+		GFF3665	0.80	-1.5
3,708,634	-		GFF3665	0.80	-0.3
3,708,634	-		GFF3665	0.80	+1.1
3,708,634	-		GFF3665	0.80	+0.8
3,708,634	-		GFF3665	0.80	-2.5
3,708,634	-		GFF3665	0.80	-1.3
3,708,636	+		GFF3665	0.81	-0.2
3,708,639	-		GFF3665	0.81	+0.8
3,708,644	+		GFF3665	0.81	-0.0
3,708,644	-		GFF3665	0.81	-2.0
3,708,649	-		GFF3665	0.82	-2.2
3,708,649	-		GFF3665	0.82	-0.5
3,708,652	-		GFF3665	0.82	-0.1
3,708,654	-		GFF3665	0.82	+0.6
3,708,658	-		GFF3665	0.83	-0.5
3,708,700	-		GFF3665	0.87	-0.6
3,708,865	+				-1.1
3,708,898	+				-1.1
3,708,906	-				+0.5
3,708,916	+		GFF3666	0.11	+0.8
3,708,937	+		GFF3666	0.13	+1.2
3,708,937	+		GFF3666	0.13	-0.8
3,708,937	+		GFF3666	0.13	-1.4
3,708,955	-		GFF3666	0.15	+0.8
3,708,959	-		GFF3666	0.16	-0.7
3,708,959	-		GFF3666	0.16	+0.3
3,708,959	-		GFF3666	0.16	+0.6
3,708,985	-		GFF3666	0.19	-0.4
3,708,995	-		GFF3666	0.20	+1.5
3,709,028	+		GFF3666	0.24	+0.3
3,709,042	+		GFF3666	0.25	-0.8
3,709,049	+		GFF3666	0.26	-0.2
3,709,053	+		GFF3666	0.27	+1.1
3,709,053	+		GFF3666	0.27	+0.6
3,709,053	+		GFF3666	0.27	+0.8
3,709,053	+		GFF3666	0.27	-0.7
3,709,061	-		GFF3666	0.28	-0.8
3,709,061	-		GFF3666	0.28	+0.8
3,709,086	+		GFF3666	0.30	+0.3
3,709,086	+		GFF3666	0.30	-0.5
3,709,086	+		GFF3666	0.30	-0.6
3,709,086	+		GFF3666	0.30	-2.0
3,709,086	+		GFF3666	0.30	-0.7
3,709,086	+		GFF3666	0.30	+0.8
3,709,094	-		GFF3666	0.31	+1.0
3,709,094	-		GFF3666	0.31	-0.5
3,709,094	-		GFF3666	0.31	-1.6
3,709,094	-		GFF3666	0.31	-0.0
3,709,094	-		GFF3666	0.31	+1.1
3,709,094	-		GFF3666	0.31	+0.6
3,709,094	-		GFF3666	0.31	-0.3
3,709,094	-		GFF3666	0.31	-0.1
3,709,094	-		GFF3666	0.31	-0.9
3,709,094	-		GFF3666	0.31	+0.5
3,709,094	-		GFF3666	0.31	-0.6
3,709,095	+		GFF3666	0.32	+1.3
3,709,195	-		GFF3666	0.43	-0.0
3,709,201	-		GFF3666	0.44	-1.3
3,709,220	+		GFF3666	0.46	+2.7
3,709,248	+		GFF3666	0.49	-0.8
3,709,248	+		GFF3666	0.49	+1.6
3,709,248	+		GFF3666	0.49	-0.2
3,709,248	+		GFF3666	0.49	-0.9
3,709,256	-		GFF3666	0.50	+0.8
3,709,258	+		GFF3666	0.50	-0.5
3,709,266	-		GFF3666	0.51	+0.6
3,709,275	-		GFF3666	0.52	+1.1
3,709,276	+		GFF3666	0.52	-0.8
3,709,284	-		GFF3666	0.53	-0.7
3,709,286	+		GFF3666	0.53	-0.2
3,709,299	-		GFF3666	0.55	+0.8
3,709,299	-		GFF3666	0.55	-0.8
3,709,302	+		GFF3666	0.55	+0.8
3,709,302	+		GFF3666	0.55	-2.1
3,709,302	+		GFF3666	0.55	+0.5
3,709,310	-		GFF3666	0.56	+1.4
3,709,310	-		GFF3666	0.56	-0.8
3,709,310	-		GFF3666	0.56	-0.2
3,709,326	+		GFF3666	0.58	-1.4
3,709,361	+		GFF3666	0.62	+0.8
3,709,369	-		GFF3666	0.63	+1.4
3,709,387	+		GFF3666	0.65	-1.3
3,709,387	+		GFF3666	0.65	+0.1
3,709,387	+		GFF3666	0.65	+0.4
3,709,395	-		GFF3666	0.66	+1.8
3,709,395	-		GFF3666	0.66	+0.0
3,709,395	-		GFF3666	0.66	-2.3
3,709,411	+		GFF3666	0.68	-1.8
3,709,429	+		GFF3666	0.70	-0.3
3,709,440	+		GFF3666	0.71	-0.3
3,709,440	+		GFF3666	0.71	+0.3
3,709,440	+		GFF3666	0.71	+0.2
3,709,441	+		GFF3666	0.71	-0.7
3,709,446	+		GFF3666	0.72	+0.6
3,709,465	-		GFF3666	0.74	+0.6
3,709,465	-		GFF3666	0.74	+0.2
3,709,480	+		GFF3666	0.76	+1.1
3,709,497	+		GFF3666	0.78	+0.7
3,709,497	+		GFF3666	0.78	-0.3
3,709,505	-		GFF3666	0.78	-1.4
3,709,505	-		GFF3666	0.78	+0.7
3,709,505	-		GFF3666	0.78	-2.9
3,709,571	-		GFF3666	0.86	+0.2
3,709,602	+		GFF3666	0.90	-1.1
3,709,610	-				+0.4
3,709,656	+				-0.2
3,709,663	+				+0.8
3,709,681	+				-0.9
3,709,700	-				+0.1
3,709,729	+				+0.4
3,709,774	+				+0.3
3,709,774	+				+0.8
3,709,774	+				+0.5
3,709,774	+				-0.6
3,709,774	+				-0.0
3,709,775	-				+0.3
3,709,782	-				-0.5
3,709,797	+				+0.6
3,709,797	+				-0.9
3,709,807	+		GFF3667	0.10	-1.1