Strain Fitness in Sphingobium sp. HT1-2 around GFF3658

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,699,643	+		GFF3657	0.56	-0.3
3,699,686	+		GFF3657	0.59	-1.1
3,699,692	+		GFF3657	0.59	+1.4
3,699,710	-		GFF3657	0.61	+0.5
3,699,715	+		GFF3657	0.61	-1.2
3,699,721	-		GFF3657	0.62	-0.2
3,699,723	-		GFF3657	0.62	-1.0
3,699,723	-		GFF3657	0.62	-1.2
3,699,735	+		GFF3657	0.62	+0.6
3,699,745	+		GFF3657	0.63	+1.3
3,699,745	+		GFF3657	0.63	-2.2
3,699,745	+		GFF3657	0.63	+0.4
3,699,745	+		GFF3657	0.63	-0.9
3,699,745	+		GFF3657	0.63	-1.3
3,699,745	+		GFF3657	0.63	-2.7
3,699,745	+		GFF3657	0.63	+0.2
3,699,748	-		GFF3657	0.63	+1.2
3,699,753	-		GFF3657	0.64	-1.7
3,699,753	-		GFF3657	0.64	+0.4
3,699,753	-		GFF3657	0.64	-0.6
3,699,753	-		GFF3657	0.64	-0.1
3,699,753	-		GFF3657	0.64	+0.1
3,699,753	-		GFF3657	0.64	-0.2
3,699,773	+		GFF3657	0.65	-0.1
3,699,773	+		GFF3657	0.65	-0.9
3,699,775	-		GFF3657	0.65	-0.4
3,699,783	-		GFF3657	0.66	+0.6
3,699,789	+		GFF3657	0.66	+1.1
3,699,794	+		GFF3657	0.67	+0.2
3,699,797	-		GFF3657	0.67	-1.0
3,699,797	-		GFF3657	0.67	-0.9
3,699,799	+		GFF3657	0.67	+1.7
3,699,817	+		GFF3657	0.68	-0.6
3,699,872	+		GFF3657	0.72	-0.2
3,699,882	+		GFF3657	0.73	+0.4
3,699,882	+		GFF3657	0.73	+0.3
3,699,882	+		GFF3657	0.73	-1.5
3,699,882	+		GFF3657	0.73	+0.2
3,699,882	+		GFF3657	0.73	+0.8
3,699,883	+		GFF3657	0.73	-0.4
3,699,890	-		GFF3657	0.73	+1.2
3,699,890	-		GFF3657	0.73	-2.1
3,699,891	-		GFF3657	0.73	-1.3
3,699,919	-		GFF3657	0.75	-1.9
3,699,949	-		GFF3657	0.77	-0.8
3,699,971	+		GFF3657	0.79	-0.5
3,699,974	+		GFF3657	0.79	+0.2
3,699,984	-		GFF3657	0.80	+1.9
3,699,997	-		GFF3657	0.81	-0.9
3,700,011	+		GFF3657	0.82	-1.0
3,700,019	-		GFF3657	0.82	-0.4
3,700,028	+		GFF3657	0.83	-0.8
3,700,036	-		GFF3657	0.83	+0.9
3,700,037	-		GFF3657	0.84	+0.4
3,700,058	+		GFF3657	0.85	-0.2
3,700,058	+		GFF3657	0.85	+0.2
3,700,058	+		GFF3657	0.85	-0.5
3,700,066	-		GFF3657	0.86	-1.3
3,700,066	-		GFF3657	0.86	-1.4
3,700,066	-		GFF3657	0.86	-0.2
3,700,070	+		GFF3657	0.86	+0.9
3,700,080	+		GFF3657	0.87	-1.5
3,700,080	+		GFF3657	0.87	-0.5
3,700,086	-		GFF3657	0.87	-1.3
3,700,088	-		GFF3657	0.87	+0.8
3,700,102	+		GFF3657	0.88	+0.4
3,700,104	+		GFF3657	0.88	-0.0
3,700,112	-		GFF3657	0.89	-0.8
3,700,138	+				+0.3
3,700,144	-				+1.4
3,700,146	+				-0.6
3,700,146	-				+0.2
3,700,159	+				+0.5
3,700,174	+				+0.6
3,700,177	-				-0.9
3,700,209	+				-0.3
3,700,222	+				+0.5
3,700,228	-				+0.5
3,700,238	-				-2.0
3,700,238	-				-1.2
3,700,238	-				+0.2
3,700,268	+				+0.7
3,700,269	+				-0.0
3,700,272	-				+0.0
3,700,276	-				-1.0
3,700,277	-				-0.5
3,700,318	+				+0.6
3,700,318	+				+0.2
3,700,326	-				-1.1
3,700,326	-				+0.6
3,700,340	+				+0.6
3,700,354	+				-0.8
3,700,395	-				-0.8
3,700,397	+				+0.8
3,700,411	+				-0.3
3,700,424	+				-0.4
3,700,462	+				-0.1
3,700,470	-				+1.2
3,700,472	+				+0.4
3,700,472	+				-1.0
3,700,474	-				+0.0
3,700,486	+				+0.2
3,700,492	-				+0.1
3,700,554	+				+0.0
3,700,559	+				-0.4
3,700,563	+				-0.2
3,700,564	+				+1.6
3,700,564	+				+0.0
3,700,564	+				+0.5
3,700,564	+				-1.1
3,700,564	+				-0.0
3,700,572	-				-0.2
3,700,572	-				+0.9
3,700,591	-				-2.4
3,700,606	+				-0.4
3,700,615	-				+0.0
3,700,615	-				-0.5
3,700,626	+				+0.6
3,700,634	-				-2.3
3,700,660	+				-1.4
3,700,660	+				-1.4
3,700,660	+				+1.9
3,700,660	+				-0.1
3,700,660	+				-0.6
3,700,667	+				+0.6
3,700,668	-				-1.0
3,700,668	-				-0.6
3,700,668	-				+0.1
3,700,675	-				+0.8
3,700,691	-				-0.5
3,700,718	+				-1.0
3,700,719	+				-2.2
3,700,726	-				-1.1
3,700,727	-				-0.4
3,700,727	-				-1.7
3,700,727	-				+1.3
3,700,731	-				-0.4
3,700,737	-				-1.8
3,700,752	+				-0.2
3,700,760	-				-0.4
3,700,784	+				-0.5
3,700,784	+				-0.3
3,700,789	+				+0.6
3,700,792	-				-0.8
3,700,792	-				-1.6
3,700,792	-				-1.0
3,700,792	-				-0.1
3,700,797	-				-1.1
3,700,800	+				+0.7
3,700,818	-				-0.8
3,700,818	-				-0.6
3,700,827	+				-0.3
3,700,832	+				-0.1
3,700,835	-		GFF3658	0.10	-1.4
3,700,858	+		GFF3658	0.11	+0.2
3,700,858	+		GFF3658	0.11	+0.2
3,700,858	+		GFF3658	0.11	+0.8
3,700,869	+		GFF3658	0.12	+0.7
3,700,877	-		GFF3658	0.12	+0.5
3,700,879	+		GFF3658	0.12	+0.3
3,700,898	-		GFF3658	0.13	-1.4
3,700,902	+		GFF3658	0.13	-1.4
3,700,902	+		GFF3658	0.13	-2.0
3,700,902	+		GFF3658	0.13	-0.2
3,700,902	+		GFF3658	0.13	+0.8
3,700,902	+		GFF3658	0.13	-1.3
3,700,902	+		GFF3658	0.13	+0.6
3,700,903	-		GFF3658	0.13	+2.5
3,700,903	-		GFF3658	0.13	-0.2
3,700,910	+		GFF3658	0.14	+0.1
3,700,910	-		GFF3658	0.14	+1.4
3,700,910	-		GFF3658	0.14	+0.5
3,700,917	+		GFF3658	0.14	-1.0
3,700,917	-		GFF3658	0.14	+0.2
3,700,943	-		GFF3658	0.15	-0.1
3,700,943	-		GFF3658	0.15	-0.5
3,700,948	+		GFF3658	0.16	-0.9
3,700,948	+		GFF3658	0.16	+1.2
3,700,948	+		GFF3658	0.16	+0.4
3,700,948	+		GFF3658	0.16	-0.2
3,700,948	+		GFF3658	0.16	-0.3
3,700,948	+		GFF3658	0.16	+0.7
3,700,948	+		GFF3658	0.16	-0.5
3,700,950	+		GFF3658	0.16	-0.2
3,700,950	+		GFF3658	0.16	+0.8
3,700,950	+		GFF3658	0.16	-0.3
3,700,950	+		GFF3658	0.16	-0.6
3,700,956	-		GFF3658	0.16	-0.6
3,700,956	-		GFF3658	0.16	-0.8
3,700,956	-		GFF3658	0.16	+1.0
3,700,956	-		GFF3658	0.16	+0.0
3,700,957	-		GFF3658	0.16	-0.6
3,700,957	-		GFF3658	0.16	-0.1
3,700,969	+		GFF3658	0.17	+0.2
3,700,969	+		GFF3658	0.17	-2.4
3,700,978	-		GFF3658	0.17	-1.7
3,701,014	+		GFF3658	0.19	-0.4
3,701,023	-		GFF3658	0.19	-0.6
3,701,031	+		GFF3658	0.20	+1.9
3,701,036	+		GFF3658	0.20	-0.2
3,701,039	-		GFF3658	0.20	-0.8
3,701,069	+		GFF3658	0.21	-1.0
3,701,081	-		GFF3658	0.22	-0.2
3,701,083	+		GFF3658	0.22	-0.6
3,701,083	+		GFF3658	0.22	+1.7
3,701,083	+		GFF3658	0.22	+0.2
3,701,091	-		GFF3658	0.23	+0.2
3,701,092	-		GFF3658	0.23	-1.0
3,701,122	+		GFF3658	0.24	-0.6
3,701,125	-		GFF3658	0.24	-1.3
3,701,137	-		GFF3658	0.25	-1.0
3,701,162	-		GFF3658	0.26	-0.3
3,701,189	+		GFF3658	0.27	+0.1
3,701,198	-		GFF3658	0.28	-1.1
3,701,204	+		GFF3658	0.28	-0.6
3,701,241	+		GFF3658	0.30	+1.2
3,701,241	+		GFF3658	0.30	-1.8
3,701,247	+		GFF3658	0.30	-0.9
3,701,247	+		GFF3658	0.30	-0.7
3,701,251	+		GFF3658	0.30	+0.5
3,701,251	+		GFF3658	0.30	+1.0
3,701,251	+		GFF3658	0.30	-1.2
3,701,255	-		GFF3658	0.31	-1.5
3,701,259	-		GFF3658	0.31	-0.0
3,701,284	-		GFF3658	0.32	+0.6
3,701,284	-		GFF3658	0.32	+1.0
3,701,304	+		GFF3658	0.33	-1.0
3,701,309	-		GFF3658	0.33	-0.4
3,701,312	-		GFF3658	0.33	-1.0
3,701,317	-		GFF3658	0.34	-0.8
3,701,332	+		GFF3658	0.34	+0.5
3,701,340	-		GFF3658	0.35	-0.6
3,701,340	-		GFF3658	0.35	+0.2
3,701,348	+		GFF3658	0.35	-1.5
3,701,356	-		GFF3658	0.35	-0.5
3,701,361	-		GFF3658	0.36	+1.2
3,701,363	+		GFF3658	0.36	-2.9
3,701,363	+		GFF3658	0.36	-1.2
3,701,371	-		GFF3658	0.36	-0.0
3,701,371	-		GFF3658	0.36	+0.1
3,701,371	-		GFF3658	0.36	+1.1
3,701,371	-		GFF3658	0.36	-0.1
3,701,392	+		GFF3658	0.37	+0.4
3,701,414	+		GFF3658	0.38	-1.0
3,701,415	+		GFF3658	0.38	-1.4
3,701,422	-		GFF3658	0.39	-0.8
3,701,422	-		GFF3658	0.39	+0.3
3,701,423	+		GFF3658	0.39	-0.2
3,701,423	-		GFF3658	0.39	+0.6
3,701,423	-		GFF3658	0.39	+0.5
3,701,433	-		GFF3658	0.39	-1.2
3,701,443	-		GFF3658	0.40	-1.7
3,701,458	+		GFF3658	0.40	+0.3
3,701,463	+		GFF3658	0.41	-0.4
3,701,465	+		GFF3658	0.41	+1.2
3,701,465	+		GFF3658	0.41	-1.2
3,701,471	-		GFF3658	0.41	+0.2
3,701,473	-		GFF3658	0.41	-0.4
3,701,483	+		GFF3658	0.42	+1.2
3,701,488	+		GFF3658	0.42	-0.2
3,701,488	+		GFF3658	0.42	+0.6
3,701,496	-		GFF3658	0.42	-1.5
3,701,497	+		GFF3658	0.42	+1.1
3,701,530	-		GFF3658	0.44	+0.9
3,701,536	-		GFF3658	0.44	-2.0
3,701,539	+		GFF3658	0.44	-2.2
3,701,557	+		GFF3658	0.45	+0.3
3,701,570	-		GFF3658	0.46	-0.1
3,701,623	+		GFF3658	0.48	-1.0
3,701,623	+		GFF3658	0.48	-1.9
3,701,631	-		GFF3658	0.49	-0.2
3,701,631	-		GFF3658	0.49	-1.0
3,701,637	+		GFF3658	0.49	-1.2
3,701,647	+		GFF3658	0.50	-0.4
3,701,647	+		GFF3658	0.50	+1.4
3,701,647	+		GFF3658	0.50	+0.8
3,701,647	+		GFF3658	0.50	-0.7
3,701,647	-		GFF3658	0.50	-0.6
3,701,690	+		GFF3658	0.52	+0.1
3,701,690	+		GFF3658	0.52	-0.0
3,701,703	+		GFF3658	0.52	+1.3
3,701,708	+		GFF3658	0.53	-0.0
3,701,709	+		GFF3658	0.53	-1.7
3,701,722	-		GFF3658	0.53	+0.6
3,701,739	+		GFF3658	0.54	+1.1
3,701,739	+		GFF3658	0.54	-1.7
3,701,747	+		GFF3658	0.55	+0.2
3,701,747	+		GFF3658	0.55	+0.8
3,701,747	-		GFF3658	0.55	-0.7
3,701,747	-		GFF3658	0.55	+0.4
3,701,747	-		GFF3658	0.55	-0.1
3,701,755	-		GFF3658	0.55	-0.3
3,701,760	-		GFF3658	0.55	-0.9
3,701,764	+		GFF3658	0.55	+0.3
3,701,764	+		GFF3658	0.55	-1.9
3,701,772	-		GFF3658	0.56	-0.7
3,701,772	-		GFF3658	0.56	-1.1
3,701,782	-		GFF3658	0.56	+0.1
3,701,782	-		GFF3658	0.56	+0.4
3,701,782	-		GFF3658	0.56	+0.3
3,701,793	+		GFF3658	0.57	-1.0
3,701,793	+		GFF3658	0.57	+0.9
3,701,793	+		GFF3658	0.57	-0.6
3,701,793	+		GFF3658	0.57	+0.7
3,701,793	+		GFF3658	0.57	-0.7
3,701,793	+		GFF3658	0.57	-1.3
3,701,793	+		GFF3658	0.57	-1.3
3,701,793	+		GFF3658	0.57	+0.7
3,701,793	+		GFF3658	0.57	-0.4
3,701,796	-		GFF3658	0.57	+0.3
3,701,799	+		GFF3658	0.57	-1.4
3,701,801	-		GFF3658	0.57	-0.6
3,701,801	-		GFF3658	0.57	-0.1
3,701,801	-		GFF3658	0.57	-0.6
3,701,801	-		GFF3658	0.57	-1.8
3,701,801	-		GFF3658	0.57	-1.4
3,701,801	-		GFF3658	0.57	-0.2
3,701,801	-		GFF3658	0.57	-1.2
3,701,801	-		GFF3658	0.57	+0.4
3,701,831	-		GFF3658	0.59	-0.2
3,701,831	-		GFF3658	0.59	+0.2
3,701,833	+		GFF3658	0.59	-1.2
3,701,833	+		GFF3658	0.59	+0.4
3,701,833	+		GFF3658	0.59	-2.7
3,701,833	+		GFF3658	0.59	-0.4
3,701,836	-		GFF3658	0.59	+0.0
3,701,839	-		GFF3658	0.59	+0.6
3,701,839	-		GFF3658	0.59	-0.3
3,701,841	-		GFF3658	0.59	-0.5
3,701,853	-		GFF3658	0.60	+1.0
3,701,873	+		GFF3658	0.61	+1.2
3,701,881	-		GFF3658	0.61	+0.2
3,701,881	-		GFF3658	0.61	-0.2
3,701,890	-		GFF3658	0.62	-0.3
3,701,897	+		GFF3658	0.62	-1.1
3,701,897	+		GFF3658	0.62	+0.1
3,701,911	+		GFF3658	0.63	+1.1
3,701,911	+		GFF3658	0.63	-0.5
3,701,911	+		GFF3658	0.63	+0.2
3,701,912	+		GFF3658	0.63	+1.3
3,701,912	+		GFF3658	0.63	-1.7
3,701,912	+		GFF3658	0.63	-2.6
3,701,912	+		GFF3658	0.63	-1.1
3,701,912	+		GFF3658	0.63	-0.4
3,701,920	-		GFF3658	0.63	-0.4
3,701,920	-		GFF3658	0.63	-1.6
3,701,920	-		GFF3658	0.63	-1.5
3,701,920	-		GFF3658	0.63	-0.2
3,701,920	-		GFF3658	0.63	+0.9
3,701,930	-		GFF3658	0.63	+0.6
3,701,948	-		GFF3658	0.64	+0.4
3,701,949	+		GFF3658	0.64	-0.9
3,701,949	+		GFF3658	0.64	-1.0
3,701,949	+		GFF3658	0.64	-0.4
3,701,949	+		GFF3658	0.64	+0.8
3,701,957	-		GFF3658	0.65	-0.6
3,701,959	+		GFF3658	0.65	+0.5
3,701,966	+		GFF3658	0.65	+0.4
3,701,974	-		GFF3658	0.66	-1.6
3,701,974	-		GFF3658	0.66	-1.2
3,701,980	-		GFF3658	0.66	-0.3
3,701,984	+		GFF3658	0.66	-0.8
3,702,012	-		GFF3658	0.67	+0.8
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3,702,513	-				-2.4
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